[clitk-commits-list] Clitk branch master updated. v1.2.0-605-gfd4a7d9

root root at tux.creatis.insa-lyon.fr
Thu Dec 15 18:44:03 CET 2011


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       via  fd4a7d9e81f324f028ba735bdc88f51f4ede5df3 (commit)
      from  9548105324e0d1e8d440a1e1d83faf37ebcf1c08 (commit)

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- Log -----------------------------------------------------------------
http://git.creatis.insa-lyon.fr/pubgit/?p=clitk.git;a=commitdiff;h=fd4a7d9e81f324f028ba735bdc88f51f4ede5df3

commit fd4a7d9e81f324f028ba735bdc88f51f4ede5df3
Author: Romulo Pinho <romulo.pinho at lyon.unicancer.fr>
Date:   Thu Dec 15 18:43:42 2011 +0100

    motion masks with and without bands

diff --git a/scripts/create_midP_masks-2.0.sh b/scripts/create_midP_masks-2.0.sh
index eb5983a..5bd0c9f 100755
--- a/scripts/create_midP_masks-2.0.sh
+++ b/scripts/create_midP_masks-2.0.sh
@@ -119,10 +119,12 @@ create_registration_masks()
   # 
   echo "$phase_file -> Creating registration masks..."
   # inside
-  create_banded_mask $mask_dir_tmp/inside_$phase_nb.mhd $mask_dir_tmp/mm_$phase_nb.mhd $mask_dir_tmp/banded_inside_$phase_nb.mhd $mask_dir_tmp/mask_inside_$phase_nb.mhd 4
+  clitkMorphoMath -i $mask_dir_tmp/mm_$phase_nb.mhd -o $mask_dir_tmp/mask_inside_$phase_nb.mhd --type 1 --radius 8
+  create_banded_mask $mask_dir_tmp/inside_$phase_nb.mhd $mask_dir_tmp/mm_$phase_nb.mhd $mask_dir_tmp/banded_inside_$phase_nb.mhd $mask_dir_tmp/banded_mask_inside_$phase_nb.mhd 4
   # outside 
   clitkExtractPatient -i $mask_dir_tmp/outside_$phase_nb.mhd -o $mask_dir_tmp/mm_outside_$phase_nb.mhd --noAutoCrop
-  create_banded_mask $mask_dir_tmp/outside_$phase_nb.mhd $mask_dir_tmp/mm_outside_$phase_nb.mhd $mask_dir_tmp/banded_outside_$phase_nb.mhd $mask_dir_tmp/mask_outside_$phase_nb.mhd 4
+  clitkMorphoMath -i $mask_dir_tmp/mm_outside_$phase_nb.mhd -o $mask_dir_tmp/mask_outside_$phase_nb.mhd --type 1 --radius 8
+  create_banded_mask $mask_dir_tmp/outside_$phase_nb.mhd $mask_dir_tmp/mm_outside_$phase_nb.mhd $mask_dir_tmp/banded_outside_$phase_nb.mhd $mask_dir_tmp/banded_mask_outside_$phase_nb.mhd 4
 }
 
 mm_preprocessing()

-----------------------------------------------------------------------

Summary of changes:
 scripts/create_midP_masks-2.0.sh |    6 ++++--
 1 files changed, 4 insertions(+), 2 deletions(-)


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