[Rtk-users] Reg: CBCT 1k reconstruction error
Zahid Hasan Ansari
zahidhasan.a at panaceamedical.com
Tue Oct 25 13:13:09 CEST 2016
Dear Sir,
Please find the Header file in the attachment.
Thanks & Regards
Zahid Hasan Ansari
----- Original Message -----
From: Cyril Mory [mailto:cyril.mory at creatis.insa-lyon.fr]
To: Zahid Hasan Ansari [mailto:zahidhasan.a at panaceamedical.com], Simon Rit [mailto:simon.rit at creatis.insa-lyon.fr]
Cc: rtk-users at public.kitware.com, saimahesh.m at panaceamedical.com
Subject: Re: [Rtk-users] Reg: CBCT 1k reconstruction error
> Dear Zahid,
>
> We do not need the projections file, at least not for a first stage of
> error tracking. We only need the header.
> Try the following command line:
>
> rtkprojections -p . -r yourProjectionsFileName -o proj.mhd
>
> It should write a "proj.mhd" and a "proj.raw". The "proj.mhd" file is
> what we need, and it is a very light text file. The "proj.raw" contains
> the pixel values, but at the moment we do not need them. We will create
> our own proj.raw file, filled with zeros, which should be enough to
> track down the error you encounter.
>
> Looking forward to receiving your file,
> Cyril
>
> On 10/25/2016 09:22 AM, Zahid Hasan Ansari wrote:
> > Dear Sir,
> >
> > The single raw file of the projections is 1.4 GB and we are not
> able to send this big file to you. Can you please suggest other alternatives
> for this?
> >
> > Or can you provide us the PC configuration to solve the issue?
> >
> > Let me know if any other clarification is required.
> >
> >
> > Thanks & Regards
> >
> > Zahid Hasan Ansari
> >
> >
> >
> > ----- Original Message -----
> > From: Cyril Mory [mailto:cyril.mory at creatis.insa-lyon.fr]
> > To: Zahid Hasan Ansari [mailto:zahidhasan.a at panaceamedical.com], Simon Rit
> [mailto:simon.rit at creatis.insa-lyon.fr]
> > Cc: rtk-users at public.kitware.com, saimahesh.m at panaceamedical.com
> > Subject: Re: [Rtk-users] Reg: CBCT 1k reconstruction error
> >
> >
> >> Hello Zahid,
> >>
> >> We will need the header of your projections file, too (It is best if you
> >> have all your projections as a single .mhd and a single .raw file, so it
> >> should be 3-D image, and you send only the .mhd file).
> >>
> >> Regards,
> >> Cyril
> >>
> >> On 10/19/2016 03:18 PM, Zahid Hasan Ansari wrote:
> >>> Dear Cyril Mory,
> >>>
> >>>
> >>> I have only used RTK version 1.3.0. but in the error
> >> message it is showing RTK version 1.2.0.
> >>> Please find the attachment of the geometry file of our
> >> projections.
> >>>
> >>> Thanks & Regards
> >>>
> >>> Zahid Hasan Ansari
> >>>
> >>>
> >>>
> >>> ----- Original Message -----
> >>> From: Cyril Mory [mailto:cyril.mory at creatis.insa-lyon.fr]
> >>> To: Zahid Hasan Ansari [mailto:zahidhasan.a at panaceamedical.com], Simon
> Rit
> >> [mailto:simon.rit at creatis.insa-lyon.fr]
> >>> Cc: rtk-users at public.kitware.com, saimahesh.m at panaceamedical.com
> >>> Subject: Re: [Rtk-users] Reg: CBCT 1k reconstruction error
> >>>
> >>>
> >>>> Dear Zahid,
> >>>>
> >>>> Without some more information, it's unlikely that we find the source of
> >>>> the problem. Here are a few things you can do to help us (and therefore
> >>>> yourself):
> >>>> - try version 1.3.0 of RTK: there have been considerable changes in the
> >>>> Cuda forward and back projection filters since v1.2.0, so your problem
> >>>> might disappear just by upgrading to the new version
> >>>> - create a small example that reproduces your problem. You can, for
> >>>> example, simulate a geometry, simulate projections of a shepp logan
> >>>> phantom, and reconstruct from these projections (take a look at
> >>>> http://wiki.openrtk.org/index.php/RTK/Scripts/FDK if you need an
> >>>> example). And send us the script
> >>>> - OR send us your geometry file and the header of your projections file
> >>>> (no need to send the projection data itself, we'll create a zero-filled
> >>>> stack of projections), and the command line that crashes
> >>>>
> >>>> Best regards,
> >>>> Cyril
> >>>>
> >>>> On 10/17/2016 02:27 PM, Zahid Hasan Ansari wrote:
> >>>>> Dear Simon Rit,
> >>>>>
> >>>>> Please find the screen shot in the attachment.
> >>>>>
> >>>>>
> >>>>> Thanks & Regards
> >>>>>
> >>>>> Zahid Hasan Ansari
> >>>>> Senior Design Engineer
> >>>>> Mobile No. +91-9738379729
> >>>>>
> >>>>> Panacea Medical Technologies Pvt. Ltd.
> >>>>> Head Office: Plot #119, GF, Envision Technology Center, EPIP Area
> Phase
> >> 1,
> >>>> Whitefield, Bangalore - 560 066, Karnataka, INDIA
> >>>>> Manufacturing Unit: Plot #87 A, Phase -II, Malur KIADB Industrial
> Area,
> >>>> Malur - 563130. Kolar District. INDIA.
> >>>>> Tel : +91 80 4242 8700 / 2845 4785 | Fax : + 91 42428710 | Url :
> >>>> http://www.panaceamedical.com
> >>>>> Bangalore - India.
> >>>>>
> >>>>>
> >>>>>
> >>>>>
> >>>>> ----- Original Message -----
> >>>>> From: Simon Rit [mailto:simon.rit at creatis.insa-lyon.fr]
> >>>>> To: Zahid Hasan Ansari [mailto:zahidhasan.a at panaceamedical.com]
> >>>>> Cc: rtk-users at public.kitware.com
> [mailto:rtk-users at public.kitware.com],
> >>>> saimahesh.m at panaceamedical.com
> >>>>> Subject: Re: [Rtk-users] Reg: CBCT 1k reconstruction error
> >>>>>
> >>>>>
> >>>>>> Dear Zahid,
> >>>>>> There is no screenshot so I'm guessing that the problem is a CUDA
> >> memory
> >>>>>> error. If you use the command line tool rtkfdk, you should first make
> >>>> sure
> >>>>>> that you use the --lowmem option to stream the projection images. If
> it
> >>>> is
> >>>>>> no sufficient, you can split your volume using the --divisions. The
> >>>>>> corresponding C++ code can be found in rtkfdk.cxx.
> >>>>>> Is Panacea Medical using RTK? We are happy to advertise the use of
> RTK
> >> on
> >>>>>> our case studies webpage
> >>>> <http://openrtk.org/RTK/project/casestudies.html>.
> >>>>>> Simon
> >>>>>>
> >>>>>> On Sat, Oct 15, 2016 at 11:12 AM, Zahid Hasan Ansari <
> >>>>>> zahidhasan.a at panaceamedical.com> wrote:
> >>>>>>
> >>>>>>>> Dear Sir\Madam,
> >>>>>>>>
> >>>>>>>> I am unable to do 1024x1024x1024 reconstruction
> >> using
> >>>> RTK
> >>>>>>>> CudaFDKConeBeamReconstructionFilter. Please check the screen shoot
> of
> >>>>>>> the
> >>>>>>>> same.
> >>>>>>>>
> >>>>>>>> I am using the following items given below.
> >>>>>>>>
> >>>>>>>> 1. RTK - RTK version 1.3
> >>>>>>>> 2. ITK - ITK version 4.7
> >>>>>>>> 3. Visual Studio 2013 win 64-bit console
> application
> >>>>>>>> 4. GeForce GTX TITAN X GPU.
> >>>>>>>> 5. CUDA 7.
> >>>>>>>> 6. CMake version 3.4.3.
> >>>>>>>> 7. Windows 7 64-bit OS.
> >>>>>>>>
> >>>>>>>> Please provide the solution of this and let me
> know
> >> if
> >>>>>> any
> >>>>>>>> other clarification is required.
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>>>> Thanks & Regards
> >>>>>>>>
> >>>>>>>> Zahid Hasan Ansari
> >>>>>>>> Senior Design Engineer
> >>>>>>>> Mobile No. +91-9738379729
> >>>>>>>>
> >>>>>>>> Panacea Medical Technologies Pvt. Ltd.
> >>>>>>>> Head Office: Plot #119, GF, Envision Technology Center, EPIP Area
> >> Phase
> >>>>>>> 1,
> >>>>>>>> Whitefield, Bangalore - 560 066, Karnataka, INDIA
> >>>>>>>> Manufacturing Unit: Plot #87 A, Phase -II, Malur KIADB Industrial
> >> Area,
> >>>>>>>> Malur - 563130. Kolar District. INDIA.
> >>>>>>>> Tel : +91 80 4242 8700 / 2845 4785 | Fax : + 91 42428710 | Url :
> >>>>>>>> http://www.panaceamedical.com
> >>>>>>>> Bangalore - India.
> >>>>>>> ________________________________________
> >>>>>>> PANACEA MEDICAL TECHNOLOGIES PVT. LTD.
> >>>>>>> Head Office: Plot #119, GF, Envision Technology Center, EPIP Area
> >> Phase
> >>>>>>> 1, Whitefield, Bangalore - 560 066, Karnataka, INDIA
> >>>>>>> Manufacturing Unit: Plot #87 A, Phase -II, Malur KIADB Industrial
> >> Area,
> >>>>>>> Malur - 563130. Kolar District. INDIA.
> >>>>>>>
> >>>>>>> Tel : +91 80 4242 8700 / 2845 4785
> >>>>>>> Fax : + 91 80 42428710
> >>>>>>> Url : http://www.panaceamedical.com
> >>>>>>> ____________________________________________________________
> >>>>>>> ________________
> >>>>>>> PMT EMAIL DISCLAIMER:
> >>>>>>>
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> >>>>>>> caused by any virus transmitted by this email.
> >>>>>>>
> >>>>>>>
> >>>>>>> _______________________________________________
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> >>>>>>>
> >>>>> ________________________________________
> >>>>> PANACEA MEDICAL TECHNOLOGIES PVT. LTD.
> >>>>> Head Office: Plot #119, GF, Envision Technology Center, EPIP Area
> Phase
> >> 1,
> >>>> Whitefield, Bangalore - 560 066, Karnataka, INDIA
> >>>>> Manufacturing Unit: Plot #87 A, Phase -II, Malur KIADB Industrial
> Area,
> >>>> Malur - 563130. Kolar District. INDIA.
> >>>>> Tel : +91 80 4242 8700 / 2845 4785
> >>>>> Fax : + 91 80 42428710
> >>>>> Url : http://www.panaceamedical.com
> >>>>>
> >>
> ____________________________________________________________________________
> >>>>> PMT EMAIL DISCLAIMER:
> >>>>>
> >>>>> This email and any files transmitted with it are confidential and
> >> intended
> >>>>> solely for the use of the individual or entity to whom they are
> >> addressed.
> >>>>> If you have received this email in error please notify the system
> >> manager.
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> >> solely
> >>>>> those of the author and do not necessarily represent those of the
> >> company.
> >>>>> Finally, the recipient should check this email and any attachments for
> >> the
> >>>>> presence of viruses. The company accepts no liability for any damage
> >>>>> caused by any virus transmitted by this email.
> >>>>>
> >>>>>
> >>>>>
> >>>>> _______________________________________________
> >>>>> Rtk-users mailing list
> >>>>> Rtk-users at public.kitware.com
> >>>>> http://public.kitware.com/mailman/listinfo/rtk-users
> >>> ________________________________________
> >>> PANACEA MEDICAL TECHNOLOGIES PVT. LTD.
> >>> Head Office: Plot #119, GF, Envision Technology Center, EPIP Area Phase
> 1,
> >> Whitefield, Bangalore - 560 066, Karnataka, INDIA
> >>> Manufacturing Unit: Plot #87 A, Phase -II, Malur KIADB Industrial Area,
> >> Malur - 563130. Kolar District. INDIA.
> >>> Tel : +91 80 4242 8700 / 2845 4785
> >>> Fax : + 91 80 42428710
> >>> Url : http://www.panaceamedical.com
> >>>
> >>
> ____________________________________________________________________________
> >>> PMT EMAIL DISCLAIMER:
> >>>
> >>> This email and any files transmitted with it are confidential and
> intended
> >>> solely for the use of the individual or entity to whom they are
> addressed.
> >>> If you have received this email in error please notify the system
> manager.
> >>> Please note that any views or opinions presented in this email are
> solely
> >>> those of the author and do not necessarily represent those of the
> company.
> >>> Finally, the recipient should check this email and any attachments for
> the
> >>> presence of viruses. The company accepts no liability for any damage
> >>> caused by any virus transmitted by this email.
> >>>
> >>
> >>
> > ________________________________________
> > PANACEA MEDICAL TECHNOLOGIES PVT. LTD.
> > Head Office: Plot #119, GF, Envision Technology Center, EPIP Area Phase 1,
> Whitefield, Bangalore - 560 066, Karnataka, INDIA
> > Manufacturing Unit: Plot #87 A, Phase -II, Malur KIADB Industrial Area,
> Malur - 563130. Kolar District. INDIA.
> >
> > Tel : +91 80 4242 8700 / 2845 4785
> > Fax : + 91 80 42428710
> > Url : http://www.panaceamedical.com
> >
> ____________________________________________________________________________
> > PMT EMAIL DISCLAIMER:
> >
> > This email and any files transmitted with it are confidential and intended
> > solely for the use of the individual or entity to whom they are addressed.
> > If you have received this email in error please notify the system manager.
> > Please note that any views or opinions presented in this email are solely
> > those of the author and do not necessarily represent those of the company.
> > Finally, the recipient should check this email and any attachments for the
> > presence of viruses. The company accepts no liability for any damage
> > caused by any virus transmitted by this email.
> >
> >
> >
>
>
>
________________________________________
PANACEA MEDICAL TECHNOLOGIES PVT. LTD.
Head Office: Plot #119, GF, Envision Technology Center, EPIP Area Phase 1, Whitefield, Bangalore - 560 066, Karnataka, INDIA
Manufacturing Unit: Plot #87 A, Phase -II, Malur KIADB Industrial Area, Malur - 563130. Kolar District. INDIA.
Tel : +91 80 4242 8700 / 2845 4785
Fax : + 91 80 42428710
Url : http://www.panaceamedical.com
____________________________________________________________________________
PMT EMAIL DISCLAIMER:
This email and any files transmitted with it are confidential and intended
solely for the use of the individual or entity to whom they are addressed.
If you have received this email in error please notify the system manager.
Please note that any views or opinions presented in this email are solely
those of the author and do not necessarily represent those of the company.
Finally, the recipient should check this email and any attachments for the
presence of viruses. The company accepts no liability for any damage
caused by any virus transmitted by this email.
-------------- next part --------------
ObjectType = Image
NDims = 3
BinaryData = True
BinaryDataByteOrderMSB = False
CompressedData = False
TransformMatrix = 1 0 0 0 1 0 0 0 1
Offset = -212.972 -212.972 -158.5
CenterOfRotation = 0 0 0
AnatomicalOrientation = RAI
ElementSpacing = 0.296 0.296 0.296
DimSize = 1440 1440 349
ElementType = MET_USHORT
ElementDataFile = Output.raw
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