[Rtk-users] Request for Assistance: Addressing Runtime Error in Reconstruction Toolkit

Thu Jan 11 08:12:23 CET 2024

Stay on the mailing list please.
I have recently experienced problems with a recent nvidia drivers (here
compatible with cuda 12) and an old Cuda (10.6 in your case) although the
error was in cufft code. The problem is that RTK is not compatible with
Cuda 12 yet. You may want to downgrade your driver and compile with a
corresponding cuda compiler. You could also check if it works without Cuda
since your error message does not seem to involve Cuda.
Simon

On Thu, Jan 11, 2024 at 8:06 AM Pritam Patro C H <
PritamPatro.CH at panaceamedical.com> wrote:

> Dear Sir,
>
>         While running the FirstCudaReconstruction itself, the application
> is crashing, we are getting this error. No output is generated.   The
> nvidia
> config is 24gb Quadro RTX 6000 and cuda version 10.2 , The nvidia-smi and
> nvcc data
>
> attached in the mail please check.
>
> fdkITK ERROR: Object factory failed to instantiate class
> itk::RealToHalfHermitianForwardFFTImageFilter<class
> itk::Image<float,3>,class itk::Image<class std::complex<float>,3> >.
>
>
>
>         Thank you for your assistance.
>
> Regards,
>
> Ch Pritam Patro.
>
>
>
>
>
>
> Panacea Medical Technologies Pvt Ltd.
>
> “Defeating Cancer Since 1999…”
>
> Plot #35, Phase-IV | Malur Industrial Area |Kolar District |Karnataka –
> 563130 | INDIA.
>
> Location :  <https://goo.gl/maps/ZcdcfaELaLzW2GKU9>
> https://goo.gl/maps/ZcdcfaELaLzW2GKU9
>
> +91 80 4242 8700
>
>  <http://www.panaceamedical.com> www.panaceamedical.com
>
>  <https://www.facebook.com/PanaceaMedicalTechnologies/>
> <https://twitter.com/panacea_medical>
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>
> Please consider the Environment before printing. RRR (R-Reduce R-Reuse
> R-Recycle)
>
> PANACEA EMAIL DISCLAIMER: Please read our online
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> Disclaimer Privacy Statement.
>
>
>
> From: Simon Rit <simon.rit at creatis.insa-lyon.fr>
> Sent: Wednesday, January 10, 2024 4:07 PM
> To: PritamPatro.CH at panaceamedical.com
> Cc: Anshika.G at panaceamedical.com; rtk-users at openrtk.org
> Subject: Re: [Rtk-users] Request for Assistance: Addressing Runtime Error
> in Reconstruction Toolkit
>
>
>
> I cannot reproduce the bug so it is likely a problem with your
> configuration. Which Cuda and driver version are you using? e.g., what is
> the output of nvidia-smi?
>
> Can you please show the output of FirstCudaReconstruction because the
> output you first showed was for header_file_parser.exe.
>
> Simon
>
>
>
> On Wed, Jan 10, 2024 at 6:28 AM Pritam Patro C H
> <PritamPatro.CH at panaceamedical.com
> <mailto:PritamPatro.CH at panaceamedical.com> > wrote:
>
> Dear sir,
>
>     During build process, I am not using ITK_USE_FFTW, ITK_USE_FFTWD and
> ITK_USE_CUFFTW. I have opted for default settings only.
>
>
>
> Yes, this error is occurring in FirstCudaReconstruction example code. And
> "error FOV" is occurring during FDK reconstruction.
>
> Regards,
>
> Ch Pritam Patro.
>
>
>
>
>
>
> Panacea Medical Technologies Pvt Ltd.
>
> “Defeating Cancer Since 1999…”
>
> Plot #35, Phase-IV | Malur Industrial Area |Kolar District |Karnataka –
> 563130 | INDIA.
>
> Location :  <https://goo.gl/maps/ZcdcfaELaLzW2GKU9>
> https://goo.gl/maps/ZcdcfaELaLzW2GKU9
>
> +91 80 4242 8700
>
>  <http://www.panaceamedical.com> www.panaceamedical.com
>
>  <https://www.facebook.com/PanaceaMedicalTechnologies/>
> <https://twitter.com/panacea_medical>
> <https://www.linkedin.com/company/panacea-medical-technology/>
>
> Please consider the Environment before printing. RRR (R-Reduce R-Reuse
> R-Recycle)
>
> PANACEA EMAIL DISCLAIMER: Please read our online
> <http://www.panaceamedical.in/panacea-disclaimer-privacy-statement/>
> Disclaimer Privacy Statement.
>
>
>
> From: Simon Rit < <mailto:simon.rit at creatis.insa-lyon.fr>
> simon.rit at creatis.insa-lyon.fr>
> Sent: Tuesday, January 9, 2024 8:31 PM
> To:  <mailto:PritamPatro.CH at panaceamedical.com>
> PritamPatro.CH at panaceamedical.com
> Cc:  <mailto:Anshika.G at panaceamedical.com> Anshika.G at panaceamedical.com
> Subject: Re: [Rtk-users] Request for Assistance: Addressing Runtime Error
> in Reconstruction Toolkit
>
>
>
> I have never encountered this issue and I'm not sure I can help. Are you
> using FFTW or CUFFT (see ITK compile options ITK_USE_FFTWF, ITK_USE_FFTWD
> and ITK_USE_CUFFTW)?
>
> I also don't see where this "error FOV" comes from, I don't find it in the
> ITK or RTK code. Does it occur with FirstCudaReconstruction?
>
>
>
> On Mon, Jan 8, 2024 at 10:52 AM Pritam Patro C H
> <PritamPatro.CH at panaceamedical.com
> <mailto:PritamPatro.CH at panaceamedical.com> > wrote:
>
> Dear Sir,
>
>                 I am using RTK 1.3 for 1 year.  Everything is functioning
> with no issues, However, now I am attempting to upgrade to RTK 2.5 or RTK
> 2.4.1 with ITK 5.3.
>
>            When I am attempting to run the first code after building RTK
> and ITK, I am getting this error-
>
> Error Description: [error FDKITK ERROR: Object factory failed to
> instantiate class itk::RealToHalfHermitianForwardFFTImageFilter<class
> itk::Image<double,3>,class itk::Image<class std::complex<double>,3> error
> FOVRequested region is (at least partially) outside the largest possible
> region..]
>
>                 I have attached the code where in the error popped up in
> FDK part. Thank you for your assistance, and we look forward to your
> guidance in resolving this issue.
>
>
>
> Regards,
>
> Ch Pritam Patro.
>
>
>
>
>
>
>
>
> Panacea Medical Technologies Pvt Ltd.
>
> “Defeating Cancer Since 1999…”
>
> Plot #35, Phase-IV | Malur Industrial Area |Kolar District |Karnataka –
> 563130 | INDIA.
>
> Location :  <https://goo.gl/maps/ZcdcfaELaLzW2GKU9>
> https://goo.gl/maps/ZcdcfaELaLzW2GKU9
>
> +91 80 4242 8700
>
>  <http://www.panaceamedical.com> www.panaceamedical.com
>
>  <https://www.facebook.com/PanaceaMedicalTechnologies/>
> <https://twitter.com/panacea_medical>
> <https://www.linkedin.com/company/panacea-medical-technology/>
>
> Please consider the Environment before printing. RRR (R-Reduce R-Reuse
> R-Recycle)
>
> PANACEA EMAIL DISCLAIMER: Please read our online
> <http://www.panaceamedical.in/panacea-disclaimer-privacy-statement/>
> Disclaimer Privacy Statement.
>
>
>
> From: Simon Rit < <mailto:simon.rit at creatis.insa-lyon.fr>
> simon.rit at creatis.insa-lyon.fr>
> Sent: Monday, January 8, 2024 12:11 PM
> To:  <mailto:PritamPatro.CH at panaceamedical.com>
> PritamPatro.CH at panaceamedical.com
> Cc:  <mailto:rtk-users at openrtk.org> rtk-users at openrtk.org;
> <mailto:Anshika.G at panaceamedical.com> Anshika.G at panaceamedical.com
> Subject: Re: [Rtk-users] Request for Assistance: Addressing Runtime Error
> in Reconstruction Toolkit
>
>
>
> Dear Ch Pritam Patro,
>
> I have not encountered such an error before. Can you reproduce the error
> with command line rtkfdk or can you share a minimal example and the
> corresponding data?
>
> Best regards,
>
> Simon Rit
>
>
>
> On Fri, Dec 29, 2023 at 12:06 PM Pritam Patro C H
> <PritamPatro.CH at panaceamedical.com
> <mailto:PritamPatro.CH at panaceamedical.com> > wrote:
>
> Dear Sir,
>
> I hope this message finds you well. My name is Ch Pritam Patro , and I am a
> user of the Reconstruction Toolkit. I am writing to bring to your attention
> to  a runtime error that I have encountered during the use of the toolkit,
> and I would greatly appreciate your guidance in resolving this issue.
>
> I was trying the first reconstruction.cxx code , and I have used itk-5.3 ,
> and rtk-2.4.1 , exactly in the Feldkamp part the below error is popping.
> The
> error image is there in the attachment.
>
> Error Description: [error FDKITK ERROR: Object factory failed to
> instantiate class itk::RealToHalfHermitianForwardFFTImageFilter<class
> itk::Image<double,3>,class itk::Image<class std::complex<double>,3> error
> FOVRequested region is (at least partially) outside the largest possible
> region..]
>
> I understand that you may be very busy, and I appreciate any time you can
> dedicate to assisting with this matter. Your expertise and support are
> invaluable to the user community, and we are grateful for your continued
> commitment to the toolkit's development.
>
> Thank you for your attention to this matter. I look forward to hearing from
> you soon.
>
> Best regards,
>
> Ch Pritam Patro
>
>
>
>
>
>
>
>
> Panacea Medical Technologies Pvt Ltd.
>
> “Defeating Cancer Since 1999…”
>
> Plot #35, Phase-IV | Malur Industrial Area |Kolar District |Karnataka –
> 563130 | INDIA.
>
> Location :  <https://goo.gl/maps/ZcdcfaELaLzW2GKU9>
> https://goo.gl/maps/ZcdcfaELaLzW2GKU9
>
> +91 80 4242 8700
>
>  <http://www.panaceamedical.com> www.panaceamedical.com
>
>  <https://www.facebook.com/PanaceaMedicalTechnologies/>
> <https://twitter.com/panacea_medical>
> <https://www.linkedin.com/company/panacea-medical-technology/>
>
> Please consider the Environment before printing. RRR (R-Reduce R-Reuse
> R-Recycle)
>
> PANACEA EMAIL DISCLAIMER: Please read our online
> <http://www.panaceamedical.in/panacea-disclaimer-privacy-statement/>
> Disclaimer Privacy Statement.
>
>
>
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