See http://www.creatis.insa-lyon.fr/site/en/publications for an up-to-date list.

Selected publications below.

1. Articles in international journals

• J. Vandemeulebroucke, O. Bernard, S. Rit, J. Kybic, P. Clarysse, and D. Sarrut. Automated segmentation of a motion mask to preserve sliding motion in deformable registration of thoracic CT. Med Phys, 2012, 39(2), 1006-1015. pdf

• J. Vandemeulebroucke, S. Rit, J. Kybic, P. Clarysse, and D. Sarrut. Spatiotemporal motion estimation for respiratory-correlated imaging of the lungs. Med Phys, 2011, 38(1), 166-178. pdf

• L. Grevillot, T. Frisson, N. Zahra, D. Bertrand, F. Stichelbaut, N. Freud, and D. Sarrut. Optimization of GEANT4 settings for Proton Pencil Beam Scanning simulations using GATE. Nucl Instr Meth Phys Res B, to appear, 2010.

• Sarrut D. and Vandemeulebroucke, J. B-LUT: Fast and low memory B-spline image interpolation. Computer Methods and Programs in Biomedicine. 99(2):172-178, 2010. pdf doi

• S. Camarasu-Pop, T. Glatard, JT. Mościcki, H. Benoit-Cattin and D. Sarrut. Dynamic Partitioning of GATE Monte-Carlo Simulations on EGEE. Journal of Grid Computing, 8(2):241-259, 2010. pdf doi

• KK. Brock, and the Deformable Registration Accuracy Consortium. Results of a Multi-Institution Deformable Registration Accuracy Study (MIDRAS). International Journal of Radiation Oncology, Biology, Physics. 1;76(2):583-96, Feb 2010. pdf doi

• N. Zahra, T. Frisson, L. Grevillot, P. Lautesse, D. Sarrut. Influence of Geant4 parameters on dose distribution and computation time for carbon ion therapy simulation. Physica Medica: European Journal of Medical Physics, 26(4):202-206, 2010. pdf doi

• T. Frisson, N. Zahra, P. Lautesse, and D. Sarrut. Monte-Carlo based prediction of radiochromic film response for hadrontherapy dosimetry. Nucl Instr Meth Phys Res A, 606(3):749-754, July 2009. pdf doi

• S. Rit, D. Sarrut, and L. Desbat. Comparison of Analytic and Algebraic Methods for Motion-Compensated Cone-Beam CT Reconstruction of the Thorax. IEEE Transactions on Medical Imaging, 28(10):1513-1525. 2009 pdf doi

• Sarrut D. and Guigues L. Region-oriented CT image representation for reducing computing time of Monte Carlo simulations. Med Phys. 35(4):1452-1463. 2008 . pdf

• Boldea V., Sharp G., Jiang S and Sarrut D. 4D-CT lung motion estimation with deformable registration: quantification of motion nonlinearity and hysteresis. Medical Physics, 35(3):1008-1018. 2008 . pdf

• Wu Z., Rietzel E., Boldea V., Sarrut D. and Sharp G. Evaluation of deformable registration of patient lung 4DCT with sub-anatomical region segmentations. Medical Physics, 35(2):775-781. 2008 . pdf

• Sarrut, D., Delhay, B., Villard, PF., Boldea, V., Beuve, M., Clarysse, P. A comparison framework for breathing motion estimation methods from 4D imaging. IEEE Transactions on Medical Imaging, 26(12):1636–1648. 2007 . pdf

• Sarrut, D. Deformable Registration for Image-Guided Radiation Therapy. Zeitschrift für Medizinische Physik, 16(4):285-297. 2006 . pdf (see also here, or a long version pdf)

• Atoui, H., Miguet, S. and Sarrut, D. A Fast Morphing-Based Interpolation For Medical Images: Application To Conformal Radiotherapy. Image Analysis and Stereology, 25(2):95-103. 2006 . pdf (see also here)

• Sarrut, D., Boldea, V., Miguet, S. and Ginestet, C. Simulation of 4D CT images from deformable registration between inhale and exhale breath-hold CT scans. Medical Physics, 33(3):605-617. 2006 . pdf

• Sarrut, D., Boldea, V., Ayadi, M., Badel, J., Ginestet, C. and Clippe, S. Non-rigid registration method to assess reproducibility of breath-holding with ABC in lung cancer. International Journal of Radiation Oncology Biology Physics, 61(2):594-607. 2005 . pdf

• Clippe, S., Sarrut, D., Malet, C., Miguet, S., Ginestet, C. and Carrie, C. Patient setup error measurement using 3D intensity-based image registration techniques. International Journal of Radiation Oncology Biology Physics, 56(1):259-263. 2003 . pdf

2. Articles in national french journals

• Sarrut, D., Perol, D., Pommier, P. and Carrie, C. Radiothérapie avec blocage respiratoire pour les grands insuffisants respiratoires atteints d'un carcinome pulmonaire non à petites cellules (Protocole RESPI 2000) : application à la modélisation des déformations d'organes par recalage déformable. Cancer/radiothérapie Elsevier. 10(6-7) :377–380. 2006. pdf doi

• Rit, S., Sarrut, D., Boldea, V. and Ginestet, C. Extraction du signal respiratoire à partir de projections cone-beam pour l imagerie TDM 4D. Revue Traitement du Signal. 23(3-4) :307–319. 2006 . pdf

• Clarysse, P., Frouin, F., Garreau, M., Lalande, A., Rousseau, J., Sarrut, D. and Vasseur., C. Intégration de Connaissances et Modélisation en Imagerie Médicale. ITBM-RBM Innovation et technologie en biologie et médecine, 25(3):139-149. 2004 . pdf

3. Articles in international conferences with review committee (and invited papers)

• T. Frisson, N. Zahra, L. Grevillot, L. Guigues, D. Sarrut. Extending GATE for dosimetry : radiotherapy and hadrontherapy applications. Proceedings of IEEE Nuclear Science Symposium and Medical Imaging Conference, Dresden, October 2008. pptx pdf

• N. Zahra, T. Frisson, P. Lautesse, D. Sarrut, Towards a new model of prediction of the optical density for radiochromic films using Monte-Carlo simulations for Carbon ion irradiation. 47th PTCOG meeting (Particle Therapy Co-Operative Group), May 19-24, Jacksonville, US, 2008

• Vandemeulebroucke, J., Clarysse, P., Kybic, J., Sarrut, D. Estimating Respiratory Motion from Cone-Beam Projections, In Medical Image Computing and Computer-Assisted Intervention MICCAI'2008, The First International Workshop on Pulmonary Image Analysis, New York, 2008 pdf

• Seroul, P. and Sarrrut, D. "VV: a viewer for the evaluation of 4D image registration", In Medical Image Computing and Computer-Assisted Intervention MICCAI'2008, Workshop - Systems and Architectures for Computer Assisted Interventions. New York, 2008. web publication

• N. Zahra, P. Lautesse, L. Guigues, T. Frisson, D. Sarrut, Geant4-based simulation of Carbon beam irradiation inside CT image : validation with radiochromic films. 11th HCBPM (Heavy Charged Particles in Biology & Medicine) IBIBAM (Ion Beams In Biology and Medicine), Sept 26-29, Heidelberg, Al., 2007

• Rit, S. and Sarrut, D. Cone-beam projection of a deformable volume for motion compensated algebraic reconstruction. In IEEE Engineering in Medicine and Biology Conference (EMBC), Lyon, France. 2007. pdf

• Desbat, L., Rit, S., Clackdoyle, R., Mennessier, C., Promayon, E. and Ntalampeki, S. Algebraic and analytic reconstruction methods for dynamic tomography. In IEEE Engineering in Medicine and Biology Conference (EMBC), Lyon, France. 2007. pdf

• Sarrut, D. Deformable registration and 4D cone-beam CT reconstruction. In Elekta 3rd European User’s Conference. Stiges, Spain. Invited paper. 2007 . pdf

• Vandemeulebroucke, J., Sarrut, D. and Clarysse, P.The POPI-model, a point-validated pixel-based breathing thorax model. In XVth International Conference on the Use of Computers in Radiation Therapy (ICCR), Toronto, Canada. 2007. pdf

• Boldea, V., Sharp, G.C. , Jiang, S.B. and Sarrut, D. Lung motion modeling with deformable registration: non-linearity and hysteresis estimation and analysis. In XVth International Conference on the Use of Computers in Radiation Therapy (ICCR), Toronto, Canada. 2007. pdf

• Rit, S., Sarrut, D. and Miguet, S. Gated cone-beam CT imaging of the thorax: a reconstruction study. In SPIE Medical Imaging: Physics of Medical Imaging. 2007. pdf

• Rit, S., Sarrut, D. and Ginestet, C. Comparison of gated and dynamic cone-beam CT reconstruction methods. In XVth International Conference on the Use of Computers in Radiation Therapy (ICCR), Toronto, Canada. 2007 . pdf

• L. Guigues, D. Sarrut, N. Dufour, M.‑C. Ricol, E. Testa, M. Boutemeur, N. Freud, J.‑M. Letang. A Platform for Monte-Carlo simulation of cancer therapy with photon and light ions beams based on the Geant 4 toolkit In proc. of IEEE Nuclear Sciences Symposium (NSS’06), San Diego, USA, October 2006.
• L. Guigues, D. Sarrut, N. Dufour, M.‑C. Ricol, E. Testa, M. Boutemeur, N. Freud, J.‑M. Letang. ThIS : A Geant4‑based Therapeutic Irradiation Simulator. In Proc. of 1st European Workshop on Monte-Carlo Treatment Planning (MCTP ‘06), Gent, Belgium, October 2006.
• N. Dufour, L. Guigues, M. Boutemeur, D. Sarrut. Monte-Carlo simulation platform for the externaltechniques of treatment of cancer. In Proc. of 1st European Conf. on Molecular Imaging Technology (EUROMEDIM’06), Marseille, May 2006.

• Sarrut, D. Three imaging techniques for treatment of moving organs. In Heavy Charged Particles in Biology and Medicine. Oropa, Italy. Invited paper. 2005. pdf

• Rit, S., Sarrut, D. and Ginestet, C. Respiratory signal extraction for 4D CT imaging of the thorax from cone-beam CT projections. In J. Duncan and G. Gerig, editors, Medical Image Computing and Computer-Assisted Intervention MICCAI'2005, volume 3749, pages 556-63. Springer Verlag, Lecture Notes in Computer Science. 2005. pdf

• Boldea, V., Sarrut, D. and Carrie, C. Comparison of 3D Dense Deformable Registration Methods for Breath-hold Reproducibility Study in Radiotherapy. In SPIE Medical Imaging: Visualization, Image-Guided Procedures, and Display, volume 5747, pages 222-230. 2005. pdf

• Atoui, H., Sarrut, D. and Miguet, S. Usefulness of image morphing techniques in cancer treatment by conformal radiotherapy. In SPIE Medical Imaging: Visualization, Image-Guided Procedures, and Display, volume 5367, pages 332-340. 2004. pdf

• Boldea, V., Sarrut, D. and Clippe, S. Lung Deformation Estimation with Non-Rigid Registration for Radiotherapy Treatment. In Medical Image Computing and Computer-Assisted Intervention MICCAI'2003, volume 2878, pages 770-7. Springer Verlag, Lecture Notes in Computer Science. 2003. pdf

• Sarrut, D. and Clippe, S. Geometrical transformation approximation for 2D/3D intensity-based registration of portal images and CT scan. In W. Niessen and M. A. Viergever, editors, Medical Image Computing and Computer-Assisted Intervention MICCAI'2001, volume 2208, pages 532-540. Springer Verlag, Lecture Notes in Computer Science, Utrecht (Netherlands). 2001. pdf

• Teytaud, O. and Sarrut, D. Kernel Based Image Classification. In International Conference on Artificial Neural Networks (ICANN), pages 369-375. 2001. .ps.gz

• Teytaud, O. and Sarrut, D. Convergence speed of deformable models. In INNS-IEEE International Joint Conference on Neural Networks (IJCNN). 2001.

• Sarrut, D. and Clippe, S. Patient positioning in radiotherapy by registration of 2D portal to 3D CT images by a contend-based research with similarity measures. In Computer Assisted Radiology and Surgery (CARS), pages 707-712. Elsevier Science, San Francisco, USA. 2000 . .ps.gz

• Sarrut, D. and Miguet, S. ARAMIS: A Remote Access Medical Imaging System. In 3rd International Symposium on Computing in Object-Oriented Parallel Environments, Lecture Notes in Computer Science, pages p 55-60. Springer-Verlag, San Francisco, USA. 1999 . ps.gz

• Sarrut, D. and Miguet, S. Fast 3D Images Transformations for Registration Procedures. In 10th International Conference on Image Analysis and Processing, pages 446-452. IEEE Computer Society, Venice, Italy. 1999. ps.gz

• Sarrut, D. and Miguet, S. Similarity Measures for Image Registration. In European Workshop on Content-Based Multimedia Indexing, pages 263-270. IHMPT-IRIT, Toulouse, France. 1999. ps.gz

• Sarrut, D. and Feschet, F. he Partial Intensity Difference Interpolation. In H. R. Arabnia, editor, International Conference on Imaging Science, Systems and Technology, pages 46-51. CSREA Press, Las Vegas, USA. 1999 . .ps.gz

• Sarrut, D. ARAMIS: an on line Parallel Platform for Medical Imaging. In H. R. Arabnia, editor, International Conference on Parallel and Distributed Processing Technique and Applications, pages 509-516. CSREA Press, Las Vegas, USA. 1998 . .ps.gz

• Miguet, S., Nicod, J. and Sarrut, D. A Linear Algorithm for constructing the Polygon Adjacency Relation in a Iso-Surface of 3D Images. In E. Ahronovitz and C. Fiorio, editors, International Conference on Discrete Geometry for Computer Imagery (DGCI) 1997, volume 1347 of Lecture Notes in Computer Science, pages 125-136. Springer-Verlag, Montpellier, France. 1997. .ps.gz

4. Abstracts in international conferences with review committee

• Boldea, V., Sharp, G., Jiang, and Sarrut, D. Construction of 4D-CT motion model using deformable registration: comparison of Eulerian and Lagrangian approaches. In 49th American Association of Physicists in Medicine (AAPM) Annual Meeting. Minneapolis, MN, USA. 2007. pdf

• Badel, J., Ginestet, C., Dufour, N. and Sarrut, D. Monte Carlo simulations of the transit dose from amorphous silicon electronic portal images. In The 9th International Workshop on Electronic Portal Imaging. Melbourne, Australia. 2006. pdf

• Ayadi, M., Sarrut, D. and Ginestet, C. Cumulating static dose distributions to simulate dynamic dose distributions: an experimental study. In 48th American Association of Physicists in Medicine (AAPM) Annual Meeting . Orlando, FL, USA. 2006. pdf

• Boldea, V., Sharp, G., Jiang, S., Choi, N., Ginestet, C., Carrie, C. and Sarrut, D. Implementation and Evaluation of Automatic Contour Propagation in 4DCT of Lung. In 48th American Association of Physicists in Medicine (AAPM) Annual Meeting . Orlando, FL, USA. 2006. pdf

• Boldea, V., Sarrut, D., Sharp, G., Jiang, S. and Choi, N. Study of Motion in a 4D-CT Using Deformable Registrations. In American Society for Therapeutic Radiology And Oncology (ASTRO). Denver, CO., USA. 2005. pdf

• Rit, S., Sarrut, D. and Ginestet, C. Respiratory signal extraction for 4D CT imaging of the thorax from cone-beam CT projections. In American Society for Therapeutic Radiology And Oncology (ASTRO). Denver, CO., USA. 2005. pdf

• Badel, J., Ginestet, C., N., D. and Sarrut, D. Monte Carlo simulation of the transit dose from amorphous silicon electronic portal images for treatment control in radiotherapy. In American Society for Therapeutic Radiology And Oncology (ASTRO) . Denver, CO., USA. 2005 . pdf

• Sarrut, D., Boldea, V., Miguet, S. and Ginestet, C. Simulation of 4D CT images from deformable registration between inhale and exhale breath-hold CT scans. In American Society for Therapeutic Radiology And Oncology (ASTRO). Denver, CO., USA. 2005. pdf

• Ayadi, M., Boldea, V., Badel, J., Ginestet, C., Sarrut, D. and Carrie, C. Dosimetric consequences of GTV s residual displacements for patients treated with the ABC device. In The 4th S.Takahashi Memorial International Workshop on 3 Dimensional Conformal Radiotherapy. Nagoya, Japan. December 2004.
• Pommier, P., Perol, D., Sarrut, D., Clippe, S., Claude, L., Gomez, F., Martel-Lafay, I., Vincent, M., Perol, M., Falcheroa, L., Etienne-Mastroianni, B., Ginestet, C. and Carrie, C. Active breathing control combined with high dose 3D conformal radiotherapy for non small cell lung cancer patients with severe respiratory insufficiency. Experience of the centre the Centre Léon Bérard. In The 4th S.Takahashi Memorial International Workshop on 3 Dimensional Conformal Radiotherapy . Nagoya, Japan. December 2004.
• Sarrut, D., Boldea, V., Clippe, S., Ginestet, C. and Carrie, C. Non-rigid registration method to assess the reproducibility of breath-holding with ABC in lung cancer. In American Society for Therapeutic Radiology And Oncology (ASTRO) . Atlanta, USA. 2004.
• Clippe, S. and Sarrut, D. Patient positioning in radiotherapy. In 92nd Annual Meeting - American Association for Cancer Research . 2001 .

5. Articles in national french conference with review committee

• Ayadi, M., Sarrut, D., Boldea, V., Badel, J., Ginestet, C., Clippe, S. and Carrie, C. Reproductibilite du blocage respiratoire : évaluation 3D à l aide d'algorithme de recalage non rigide d'images. In 43èmes Journées Scientifiques de la Société Française de Physique. Montpellier. 2004.
• Badel, J., Sebban, M., Ginestet, C. and Sarrut, D. Contrôle du traitement en radiothérapie par l utilisation de l'imagerie portale numérique : contrôle dosimétrique et du positionnement. In 43èmes Journées Scientifiques de la Société Française de Physique. Montpellier. 2004 .
• Clippe, S., Sarrut, D., Miguet, S. and Carrie, C. Aide au positionnement du patient en radiothérapie conformationnelle par l usage de techniques de recalage d'images 2D/3D basées sur l'intensité des pixels. In 13ème Congrès de la SFRO. Paris. Best Poster Price. 2002.

• Sarrut, D., Miguet, S., Vincent, F., Clarysse, P., Exbrayat, M., Brunie, L., Fleute, M., Desbat, L. and Magnin, I. Requêtes complexes et hybrides dans des bases d images médicales distantes. Une illustration en imagerie cardiaque. In Premières rencontres des Sciences et Technologies de l'Information. 2001. pdf

• Sarrut, D. and Clippe, C. Positionnement de patient en radiothérapie par recalage 2D/3D sans segmentation. In Radiothérapie Assistée par l Image (RAI 2001) . Centre Antoine-Lacassagne, Nice. 2001.

• Miguet, S., Sarrut, D. and Clippe, C. Positionnement de patient en radiothérapie conformationnelle. In Avancées et perspectives en matière de GMCAO (Gestes Médico-Chirurgicaux Assistés par Ordinateur) . Grenoble, France. 2000. .ps.gz

• Coeurjolly, D., Sarrut, D. and Tougne, L. Décimation en Imagerie Médicale 3D. In Courbes Surfaces et Algorithmes. Journées du Groupe de Travail "Modélisation Géométrique" Grenoble, France. 1999. .ps.gz,

6. Thesis

• Vandemeulebroucke, J. Lung Motion Modelling and Estimation for Image Guided Radiation Therapy, Ph.D. Thesis, INSA Lyon. 2010. pdf

• Badel, JN. Simulation par méthodes Monte Carlo de la dosimétrie par imagerie portale numérique dans le cadre du contrôle du traitement en radiothérapie, Ph.D. Thesis, INSA Lyon. 2009. pdf

• Sarrut, D. Imagerie dynamique et simulations Monte-Carlo pour la radiothérapie guidée par l'image. Habilitation à Diriger des Recherches. Université Claude Bernard Lyon 1. 2008. pdf

• Ayadi, M. Mesures et intégration des marges de conformation et de mouvement dans le plan de traitement des cancers bronchiques non à petites cellules, Ph.D. Thesis, Université Claude Bernard Lyon 1. 2007. pdf

• Rit, S. Prise en compte du mouvement respiratoire pour la reconstruction d’images tomodensitométriques, Ph.D. Thesis, Université Lumière Lyon 2. 2007. pdf

• Boldea, V. Intégration de la respiration en radiothérapie : apport du recalage déformable d images, Ph.D. Thesis, Université Lumière Lyon 2. 2006. pdf

• Sarrut, D. Recalage multimodal et plate-forme d'imagerie médicale à accès distant. Ph.D. Thesis, Université Lumière Lyon 2. 2000. pdf