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Book
  1. [CLAR-11b] P. Clarysse, "Imagerie dynamique cardiaque et thoracique", Traité Information et Science du Vivant: Hermes-Lavoisier, pp. 288 pages, 2011.
Book Chapter
  1. [GIRA-12] P. R. Girard, R. Pujol, P. Clarysse, A. Marion, R. Goutte, and P. Delachartre, "Analytic Video (2D+T) Signals by Clifford Fourier Transforms in Multiquaternion Grassmann-Hamilton-Clifford Algebras", Quaternion and Clifford Fourier transforms and Wavelets, TIM/Birkhauser: Springer, pp. in press, 2012.
  2. [GERM-09] C. Germain-Renaud, V. Breton, P. Clarysse, B. Delhay, Y. Gaudeau, T. Glatard, E. Jeannot, Y. Legré, J. Montagnat, J. M. Moureaux, et al., "Grid Analysis of Radiological Data", Handbook of Research on Computational Grid Technologies for Life Sciences, Biomedicine and Healthcare: IGI, 2009.
Journal Article
  1. [VAND-12] J. Vandemeulebroucke, O. Bernard, S. Rit, J. Kybic, P. Clarysse, and D. Sarrut, "Automated Segmentation of a Motion Mask to Preserve Sliding Motion in Deformable Registration of Thoracic CT", Med Phys, vol. 39, no. 2, pp. 1006-1015, 2012 .
  2. [BASA-12] A. Basarab, P. Clarysse, T. Arts, C. Cachard, P. Croisille, and P. Delachartre, "Estimation de mouvement par décalage de phase et maillage déformable appliquée à des séquences cardiaques d'IRM marquées", Traitement du Signal, 2012.
  3. [BERK-11] M. Berkane, P. Clarysse, J. Y. Njiwa, Y. M. Zhu, and I. E. Magnin, "A neural network based summarizing method of periodic image sequences", Neural Network World, vol. 20, pp. 687-703, 2011.
  4. [CLAR-11b] P. Clarysse, M. Picq, and J. Pousin, "Optimal extended optical flow and statistical constraints: A result of convergence", J Comput Appl Math, vol. 235, no. 7, pp. 1840-1848, 2011.
  5. [CLAR-11] P. Clarysse, J. Tafazzoli, P. Delachartre, and P. Croisille, "Simulation based evaluation of cardiac motion estimation methods in tagged-MR Image sequences", Journal of Cardiovascular Magnetic Resonance, vol. 13, no. Suppl 1, pp. P360, 2011 .
  6. [VAND-11] J. Vandemeulebroucke, S. Rit, J. Kybic, P. Clarysse, and D. Sarrut, "Spatio-Temporal Motion Estimation for Respiratory-Correlated Imaging of the Lungs", Med Phys, vol. 38, no. 1, pp. 166-178, 2011 .
  7. [SCHA-10] J. Schaerer, C. Casta, J. Pousin, and P. Clarysse, "A dynamic elastic model for segmentation and tracking of the heart in MR image sequences", Med Image Anal, vol. 14, no. 6, pp. 738-749, 2010.
  8. [ARTS-10] T. Arts, F. W. Prinzen, T. Delhaas, J. R. Milles, A. C. Rossi, and P. Clarysse, "Mapping Displacement and Deformation of the Heart With Local Sine-Wave Modeling", IEEE T Med Imaging, vol. 29, no. 5, pp. 1114-1123, 2010.
  9. [CLAR-10a] P. Clarysse, B. Delhay, M. Picq, and J. Pousin, "Optimal extended optical flow subject to a statistical constraint", J Comput Appl Math, vol. 234, pp. 1291-1302, 2010.
  10. [BERK-10] M. Berkane, P. Clarysse, J. Yankam Njiwa, Y. M. Zhu, and I. E. Magnin, "Spatio-temporal summarizing method of periodic image sequences with Kohonen Maps", Neural Network World, vol. 20, no. 6, pp. 687-703, 2010.
  11. [SARR-07] D. Sarrut, B. Delhay, P. F. Villard, V. Boldea, M. Beuve, and P. Clarysse, "A comparison framework for breathing motion estimation methods from 4D imaging", IEEE Trans Med Imaging, vol. 26, no. 12, pp. 1636-1648, 2007 .
  12. [ROUC-07] Y. Rouchdy, J. Pousin, J. Schaerer, and P. Clarysse, "A nonlinear elastic deformable template for soft structure segmentation: application to the heart segmentation in MRI", Inverse Problems, vol. 23, pp. 1017–1035, 2007.
  13. [LUO-05] J. Luo, Y. M. Zhu, P. Clarysse, and I. E. Magnin, "Correction of Bias Field in MR Images Using Singularity Function Analysis", IEEE Trans Med Imaging, vol. 24, no. 8, pp. 1067-1085, 2005.
  14. [GERM-05] C. Germain, V. Breton, P. Clarysse, Y. Gaudeau, T. Glatard, E. Jeannot, Y. Legre, C. Loomis, I. E. Magnin, J. Montagnat, et al., "Grid-enabling medical image analysis", J Clin Monit Comput, vol. 19, no. 4-5, pp. 339-349, 2005.
  15. [HADD-05c] R. Haddad, P. Clarysse, M. Orkisz, D. Revel, and I. E. Magnin, "A realistic anthropomorphic numerical model of the beating heart", Innov Tech Biol Med - RBM, vol. 26, no. 4, pp. 270-272, 2005 .
  16. [CLAR-04] P. Clarysse, F. Frouin, M. Garreau, A. Lalande, H. Rousseau, D. Sarrut, and C. Vasseur, "Intégration de connaissances et modélisation en imagerie médicale", Innov Tech Biol Med - RBM, vol. 25, no. 3, pp. 139-149, 2004 .
  17. [MAKE-03a] T. Makela, Q. C. Pham, P. Clarysse, J. Lotjonen, O. Sipila, H. Hanninen, K. Lauerma, J. Knuuti, T. Katila, and I. E. Magnin, "A 3D model-based registration approach for the PET, MR and MCG cardiac data fusion", Med Image Anal, vol. 7, no. 3, pp. 377-389, 2003.
  18. [CLAR-02] P. Clarysse, M. Han, P. Croisille, and I. E. Magnin, "Exploratory analysis of the spatio-temporal deformation of the myocardium during systole from tagged MRI", IEEE Trans Biomed Engin, vol. 149, no. 1, pp. 1328–1339, 2002.
  19. [MAKE-02] T. Makela, P. Clarysse, O. Sipila, N. Pauna, Q. C. Pham, T. Katila, and I. E. Magnin, "A review of cardiac registration methods", IEEE Trans Med Imaging, vol. 21, no. 9, pp. 1011–1021, 2002.
  20. [CLAR-00a] P. Clarysse, C. Basset, L. Khouas, P. Croisille, D. Friboulet, C. Odet, and I. E. Magnin, "2D spatial and temporal displacement field fitting from cardiac MR tagging", Med Image Anal, pp. 253-268, 2000.
  21. [VERN-99] H. Vernhet, D. Revel, C. Arteaga, P. Clarysse, F. Sottilini, J. P. Roux, and E. Canet-Soulas, "Predictive value of regional left ventricular circumferential shortening in jeopardized myocardium : a 2D SPAMM Cine-MR imaging study in a canine model (in process citation)", Invest Radiol, vol. 34, no. 10, pp. 621–628, 1999.
  22. [HAN-98b] M. Han, P. Clarysse, P. Croisille, I. E. Magnin, and D. Revel, "Aide à l'analyse de l'évolution spatio-temporelle de la déformation du myocarde", Innov Tech Biol Med, vol. {19 Spé, no. 5, pp. 379-388, 1998.
  23. [KHOU-98a] L. Khouas, P. Clarysse, D. Friboulet, and C. Odet, "Fast 2D vector field visualization using a 2D texture synthesis based on an autoregressive filter. Application to cardiac imaging", Mach Graph Vision, vol. 7, no. 4, pp. 751-764, 1998.
  24. [REIS-97a] P. J. Reissman, P. Clarysse, and I. E. Magnin, "Modélisation et mise en correspondance avec la pyramide neuractive", Traitement du Signal, vol. 14, no. 4, pp. 395–403, 1997.
  25. [CLAR-97a] P. Clarysse, D. Friboulet, and I. E. Magnin, "Tracking geometrical descriptors on 3D deformable surfaces. Application to the left-ventricular surface of the heart", IEEE Trans Med Imaging, vol. 16, no. 4, pp. 392–404, 1997.
  26. [ORKI-96c] M. Orkisz, and P. Clarysse, "Estimation du flot optique en présence de discontinuités : une revue", Traitement du Signal, vol. 13, no. 5, pp. 489-513, 1996.
  27. [ROUS-92b] J. Rousseau, P. Clarysse, D. Gibon, S. Blond, N. Bradaï, and X. Marchandise, "A frameless method for 3D MRI- and CT- guided stereotaxic localization", Neuroradiology, vol. 2, pp. 35-41, 1992.
  28. [ROUS-92a] J. Rousseau, D. Gibon, P. Clarysse, J. P. Pruvo, S. Blond, and X. Marchandise, "Une méthode de repérage stéréotaxique par IRM", J Med Nucl Biophy, vol. 16, no. 4, pp. 374–379, 1992.
  29. [CLAR-91] P. Clarysse, D. Gibond, J. Rousseau, S. Blond, C. Vasseur, and X. Marchandise, "A computer assisted system for 3D frameless localization in stereotaxic MRI", IEEE Trans Med Imaging, vol. 10, no. 4, pp. 523–529, 1991.
  30. [GIBO-91] D. Gibon, P. Clarysse, J. Rousseau, S. Blond, R. Decool, and X. Marchandise, "Station d'imagerie stéréotaxique en neurochirurgie et radiothérapie multifaisceaux", Bull Cancer / Radiother., vol. 78, pp. 321–325, 1991.
  31. [ROUS-91] J. Rousseau, P. Clarysse, S. Blond, D. Gibon, C. Vasseur, and X. Marchandise, "Validation of a new method for stereotactic localization using MR Imaging", Journal of Computer Assisted Tomography, vol. 15, no. 2, pp. 291–296, 1991.
Conference Paper
  1. [WANG-12] V. Y. Wang, C. Casta, P. Croisille, P. Clarysse, Y. - M. Zhu, B. R. Cowan, A. A. Young, and M. P. Nash, "Estimation of in vivo human myocardial fibre strain by integrating diffusion tensor and tagged MRI using FE modeling", IEEE International Symposium on Biomedical Imaging (ISBI), Barcelona, Spain, pp. accepted, 2012.
  2. [GLAT-12] T. Glatard, A. Marion, H. Benoit-Cattin, S. Camarasu-Pop, P. Clarysse, R. Ferreira da Silva, G. Forestier, B. Gibaud, C. Lartizien, H. Liebgott, et al., "Multi-modality image simulation with the virtual imaging platform: Illustration on cardiac MRI and echography", IEEE International Symposium on Biomedical Imaging (ISBI), Barcelona, Spain, pp. accepted, 2012.
  3. [GIRA-11a] P. R. Girard, R. Pujol, P. Clarysse, A. Marion, R. Goutte, and P. Delachartre, "Analytic Video (2D+T) Signals by Clifford Fourier Transforms in Multiquaternion Grassmann-Hamilton-Clifford Algebras", 9th International Conference on Clifford Algebras and Their Applications in Mathematical Physics, Editor, K. Gürlebeck. , Weimar, Germany, 07/2011.
  4. [LEBE-11] J. Lebenberg, I. Buvat, M. Garreau, C. Casta, C. Constantinidès, J. Cousty, A. Cochet, S. Jehan-Besson, C. Tilmant, M. Lefort, et al., "Comparison of Different Segmentation Approaches without Using Gold Standard. Application to the Estimation of the Left Ventricle Ejection Fraction from Cardiac Cine MRI Sequences", 33th Annual International Conference of the IEEE EMBS, Boston, USA, pp. 2663-2666, 09/2011.
  5. [CAST-11b] C. Casta, P. Clarysse, P. Pousin, J. Schaerer, P. Croisille, and Y. - M. Zhu, "Driving Dynamic Cardiac Model Adaptation with MR-Tagging Displacement Information", FIMH, New-York, USA, Springer, pp. 137-144, 05/2011.
  6. [CASTA-11] C. Casta, P. Clarysse, J. Pousin, J. Schaerer, P. Croisille, and Y. M. Zhu, "Driving Dynamic Cardiac Model Adaptation with MR-Tagging Displacement Information", FIMH 2011: LNCS 6666, pp. 137-144, 2011.
  7. [JEHA-11] S. Jehan-Besson, C. Tilmant, A. De Cesare, F. Frouin, L. Najman, A. Lalande, L. Sarry, C. Casta, P. Clarysse, C. Constantidinès, et al., "Estimation d'une forme mutuelle pour l'évaluation de la segmentation en imagerie cardiaque", GRETSI, Bordeaux, France, 09/2011.
  8. [FRED-11] S. B. Fredj, T. Glatard, C. Casta, and P. Clarysse, "An exploration framework for segmentation parameter spaces", IEEE International Conference on Image Processing , Brussels, Belgium, 2011.  Download: icip11.pdf (346.24 KB)
  9. [FROU-11] F. Frouin, M. Garreau, I. Buvat, C. Casta, C. Constantinidès, J. Cousty, A. Cochet, S. Jehan-Besson, C. Tilmant, M. Lefort, et al., "Méthodologie pour comparer différentes méthodes d’extraction de biomarqueurs sans méthode de référence. Application à la segmentation du ventricule gauche en IRM cardiaque pour estimer la fraction d’éjection", RITS, Rennes, France, 04/2011.
  10. [DELA-11] P. Delachartre, P. Clarysse, R. Goutte, and P. R. Girard, "Mise en œuvre du signal analytique dans les algèbres de Clifford", GRETSI, Bordeaux, France, 09/2011.
  11. [CAST-11a] C. Casta, P. Clarysse, J. Pousin, J. Schaerer, P. Croisille, and Y. - M. Zhu, "Motion constrained cardiac model retrieval from MR Imaging", RITS, Rennes, France, 04/2011.
  12. [MARI-11b] A. Marion, G. Forestier, H. Benoit-Cattin, S. Camarasu-Pop, P. Clarysse, R. Ferreira da Silva, B. Gibaud, T. Glatard, P. Hugonnard, C. Lartizien, et al., "Multi-modality medical image simulation of biological models with the Virtual Imaging Platform (VIP)", The 24th International Symposium on Computer-Based Medical Systems (CBMS 2011), Bristol, UK, pp. 1-6, 2011 .  Download: cbms2011-multimod.pdf (726.29 KB)
  13. [FORE-11] G. Forestier, A. Marion, H. Benoit-Cattin, P. Clarysse, D. Friboulet, T. Glatard, P. Hugonnard, C. Lartizien, H. Liebgott, J. Tabary, et al., "Sharing object models for multi-modality medical image simulation: a semantic approach", The 24th International Symposium on Computer-Based Medical Systems (CBMS 2011), Bristol, UK, pp. 1-6, 2011 .  Download: cbms2011.pdf (226.44 KB)
  14. [LOMB-11] H. Lombaert, J. - M. Peyrat, P. Croisille, S. Rapacchi, L. Fanton, P. Clarysse, H. Delingette, and N. Ayache, "Statistical Analysis of the Human Cardiac Fiber Architecture from DT-MRI", FIMH, New-York, USA, Springer, pp. 171-179, 05/2011.
  15. [GREZ-10] L. Grèzes-Besset, J. Schaerer, P. Clarysse, and D. Sarrut, "Apparent motion clustering on Cone-Beam fluoroscopic images for thorax tracking", International Conference on the Use of Computers in Radiation Therapy (ICCR), Amsterdam, The Netherlands, 06/2010.  Download: lgrezesb_paper.pdf (424.91 KB)
  16. [VAND-10b] J. Vandemeulebroucke, O. Bernard, J. Kybic, P. Clarysse, and D. Sarrut, "Automatic motion mask extraction for deformable registration of the lungs", XVIth International Conference on the Use of Computers in Radiation Therapy, Amsterdam, 2010.  Download: vandemeulebroucke2010a.pdf (862.78 KB)
  17. [GREZ-10] L. Grèzes-Besset, J. Schaerer, P. Clarysse, and D. Sarrut, "Fluoroscopic Block-Matching-based mean position tracking of respiratory motion for lung cancer radiotherapy", ESTRO, vol. 96, issue S5-656-S654-Sup1, pp. S5-656-S654-Sup1, 2010 .
  18. [CAST-10] C. Casta, P. Clarysse, J. Pousin, J. Schaerer, P. Croisille, and Y. M. Zhu, "Incorporating low-level constraints for the retrieval of personalised heart models from dynamic MRI", Statistical Atlases and Computational Models of the Heart: Mapping Structure and Function (STACOM), MICCAI 2010 Workshop, vol. LNCS 6364: Springer-Verlag Berlin Heidelberg, pp. 174-183, 2010.
  19. [YANG-10] F. Yang, Y. M. Zhu, X. Song, J. H. Luo, and P. Clarysse, "Interpolation of Human Cardiac DT-MRI Data Using Polar Coordinates", IEEE ICSP'10, Beijing,China, 10/2010.
  20. [VAND-09b] J. Vandemeulebroucke, J. Kybic, P. Clarysse, and D. Sarrut, "Estimating breathing motion from cone-beam projections using a prior patient model", 10th Biennial ESTRO Meeting on Physics and Radiation Technology For Clinical Radiotherapy: Elsevier, pp. S185, 2009.
  21. [CAST-09] C. Casta, P. Clarysse, J. Schaerer, and J. Pousin, "Evaluation of the Dynamic Deformable Elastic Template model for the segmentation of the heart in MRI sequences", Midas Journal: MICCAI Workshop - 3D Segmentation in the Clinic: A Grand Challenge III, London, UK, September, 2009.
  22. [KISS-09] A. Kissi, C. Tilmant, A. De Cesare, A. Comte, L. Najman, A. Lalande, P. Clarysse, M. Garreau, L. Sarry, and F. Frouin, "Initiative multicentrique pour une plateforme d'évaluation en imagerie cardiaque", RITS, Lille, France, March, 2009.
  23. [NJIWA-09] J. Yankam Njiwa, M. Berkane, J. H. Luo, P. Clarysse, I. E. Magnin, and Y. M. Zhu, "Reconstruction of cardiac Cine MR Images using analytic image and neural networks", ISPA'09, Salzburg, Austria, pp. in-press, 2009.
  24. [GREZ-09] L. Grèzes-Besset, J. Vandemeulebroucke, P. Clarysse, and D. Sarrut, "Respiratory motion tracking from different viewing angles during lung cancer treatment in radiotherapy", IEEE Medical Imaging Conference, Orlando, USA, 25-30 ., 10/2009.
  25. [VAND-09] J. Vandemeulebroucke, J. Kybic, P. Clarysse, and D. Sarrut, "Respiratory motion estimation from cone-beam projections using a prior model", Medical Image Computing and Computer-Assisted Intervention (MICCAI'09), London, UK, Springer, pp. in-press, 2009.
  26. [MAHE-09] K. Maheshwari, T. Glatard, J. Schaerer, B. Delhay, S. Camarasu-Pop, P. Clarysse, and J. Montagnat, "Towards Production-level Cardiac Image Analysis with Grids", HealthGrid'09, Berlin, 2009.
  27. [VAND-08] J. Vandemeulebroucke, P. Clarysse, J. Kybic, and D. Sarrut, "Estimating Respiratory Motion from Cone-Beam Projections", In Medical Image Computing and Computer-Assisted Intervention MICCAI'2008, The First International Workshop on Pulmonary Image Analysis, New York, sep, 2008 .
  28. [FRIN-08] C. Frindel, P. Gueth, P. Clarysse, Y. M. Zhu, and M. Robini, "A global approach to cardiac tractography", Biomedical Imaging: From Nano to Macro, 2008. ISBI 2008. 5th IEEE International Symposium on, pp. 883–886, May, 2008 .
  29. [BERK-08b] M. Berkane, P. Clarysse, and I. E. Magnin, "A Neural Network-Based Approach to Motion Estimation with Discontinuities", Hybrid Intelligent Systems, 2008 (HIS '08). Eighth International Conference on, Barcelona, Spain, pp. 356-361, September, 2008 .
  30. [SCHA-08] J. Schaerer, J. Pousin, and P. Clarysse, "A new singular perturbation approach for image segmentation tracking", Biomedical Imaging: From Nano to Macro, 2008. ISBI 2008. 5th IEEE International Symposium on, pp. 1445–1448, May, 2008 .
  31. [BERK-08a] M. Berkane, P. Clarysse, and I. E. Magnin, "Spatio-temporal summarizing method of periodic sequences with Kohonen maps", Artificial Neural Networks - ICANN 2008, vol. LNCS 5163, Pragues, Czech Republic, Springer Berlin / Heidelberg, pp. 818–826, September, 2008 .
  32. [CAMA-08b] S. Camarasu-Pop, H. Benoit-Cattin, L. Guigues, P. Clarysse, O. Bernard, and D. Friboulet, "Towards a Virtual Radiological Platform Based on a Grid Infrastructure", Medical imaging on grids: achievements and perspectives (MICCAI Grid Workshop), New York, USA, pp. 85-95, Sept, 2008.
  33. [BERK-08c] M. Berkane, P. Clarysse, and I. E. Magnin, "Une approche neuronale pour l'extraction de résumé de séquences d'images pour des phénomènes quasi-périodiques", Journées d'Etudes Algéro-Françaises en Imagerie Médicale, JETIM'08, Tipaza, Algérie, pp. 83-87, November, 2008.
  34. [ROUC-07a] Y. Rouchdy, J. Pousin, J. Schaerer, and P. Clarysse, "A hyperelastic deformable template for cardiac segmentation in MRI", Functional Imaging and Modeling of the Heart, vol. LNCS 4466, Salt Lake City, UT, USA, pp. 443-452, jun, 2007.
  35. [DELH-07] B. Delhay, P. Clarysse, and I. E. Magnin, "Locally adapted spatio-temporal deformation model for dense motion estimation in periodic cardiac image sequences", Functional Imaging and Modeling of the Heart, vol. LNCS 4466, Salt Lake City, UT, USA, pp. 393-402, June, 2007.
  36. [SCHA-07b] J. Schaerer, P. Clarysse, and J. Pousin, "A New Dynamic Elastic Model for Cardiac Image Analysis", Proceedings of the 29th Annual International Conference of the IEEE EMBS, Lyon, France, pp. 4488-4491, aug, 2007.
  37. [HADD-07] R. Haddad, I. E. Magnin, and P. Clarysse, "A new fully-digital anthropomorphic and dynamic thorax/heart model", Proceedings of the 29th Annual International Conference of the IEEE EMBS, Lyon, France, pp. 5999-6002, aug, 2007.
  38. [VAND-07] J. Vandemeulebroucke, D. Sarrut, and P. Clarysse, "Point-validated Pixel-based Breathing Thorax Model", International Conference on the Use of Computers in Radiation Therapy (ICCR), Toronto, Canada, pp. 195-199, jun, 2007 .
  39. [GELA-07a] A. Gelas, J. Schaerer, O. Bernard, D. Friboulet, P. Clarysse, I. E. Magnin, and R. Prost, "Radial Basis Functions Collocation Methods For Model-Based Level-set Segmentation", IEEE International Conference on Image Processing (ICIP), vol. 2, San Antonio, TX, USA, pp. 237-240, sep, 2007.
  40. [SCHA-07a] J. Schaerer, A. Gelas, R. Prost, P. Clarysse, and I. E. Magnin, "Volumetric Mesh Construction From Scattered Prior Data: Application To Cardiac MR Image Analysis", European Signal Processing Conference, Poznań, Poland, pp. 438-442, sep, 2007.
  41. [SCHA-06] J. Schaerer, Z. Qian, P. Clarysse, D. Metaxas, L. Axel, and I. E. Magnin, "Fast and automated creation of patient-specific 3D heart model from tagged MRI", From Statistical Atlases to Personalized Models: Understanding Complex Diseases in Populations and Individuals, Satellite Workshop MICCAI 2006, Copenhagen, Denmark, pp. 91-94, October, 2006.
  42. [DELH-06] B. Delhay, P. Clarysse, C. Pera, and I. E. Magnin, "A spatio-temporal deformation model for dense motion estimation in periodic cardiac image sequences", From Statistical Atlases to Personalized Models: Understanding Complex Diseases in Populations and Individuals, Satellite Workshop MICCAI 2006, Copenhagen, Denmark, pp. (in-press), October, 2006.
  43. [POUS-05] J. Pousin, Y. Rouchdy, M. Picq, J. Schaerer, and P. Clarysse, "Constrained 3D elastic model for the segmentation in cardiac MRI", Computers In Cardiology, Lyon, France, pp. 785-788, 2005.
  44. [DELH-05] B. Delhay, J. Lotjonen, P. Clarysse, T. Katila, and I. E. Magnin, "A Dynamic 3-D Cardiac Surface Model from MR Images", Computers In Cardiology, Lyon, France, pp. 423-426, 2005.
  45. [DELH-05b] B. Delhay, P. Clarysse, J. Lotjonen, T. Katila, and I. E. Magnin, "Evaluation of two free form deformation based motion estimators in cardiac and chest imaging", Functional Imaging and Modeling of the Heart (FIMH), Barcelona, Spain, pp. 467-476, 2005.
  46. [GERM-05a] C. Germain, V. Breton, P. Clarysse, Y. Gaudeau, T. Glatard, E. Jeannot, Y. Legré, C. Loomis, J. Montagnat, J. M. Moureaux, et al., "Grid-enabling medical image analysis", Biogrid'05, proceedings of the IEEE/ACM International Symposium on Cluster Computing and the Grid, Cardiff, UK, 2005 .
  47. [BRUS-05] E. Brusseau, G. Said, and P. Clarysse, "Modèle numérique d'estimation 2D de la déformation des tissus mous biologiques à partir d'images échographiques radiofréquence: Résultats sur simulations numériques et données expérimentales", GRETSI'05, Louvain-La-Neuve, Belgium, pp. 287-290, 2005.
  48. [HADD-05d] R. Haddad, P. Clarysse, M. Orkisz, D. Revel, and I. E. Magnin, "A Realistic Anthropomorphic Dynamic Heart Phantom", Computers in Cardiology, Lyon, France, pp. 801-804, 2005.
  49. [HADD-05b] R. Haddad, P. Clarysse, M. Orkisz, D. Revel, and I. E. Magnin, "A realistic anthropomorphic numerical model of the beating heart", Functional Imaging and Modeling of the Heart, Barcelona, Spain, pp. 384-393, 2005 .
  50. [SCHA-05] J. Schaerer, Y. Rouchdy, P. Clarysse, B. Hiba, P. Croisille, J. Pousin, and I. E. Magnin, "Simultaneous Segmentation of the Left and Right Heart Ventricles in 3D Cine MR Images of Small Animals", Computers In Cardiology, Lyon, France, pp. 231-234, 2005.
  51. [HADD-05a] R. Haddad, P. Clarysse, M. Orkisz, D. Revel, and I. E. Magnin, "Un modèle numérique anthropomorphique du coeur battant", Forum de Recherche en Génie Biologique et Médical (JSTIM-FRGBM'05), vol. 26, no. 4, Nancy, France, pp. 77-78, 2005.
  52. [MILL-04a] J. Milles, P. Clarysse, A. Van Susterens, P. Croisille, I. E. Magnin, and T. Arts, "Automatic 2D segmentation of the left ventricle in tagged cardia MRI using motion", IEEE International Symposium on Biomedical Imaging : From Nano to Macro, Arlington, VA, USA, 2004.
  53. [DELH-04] B. Delhay, P. Clarysse, P. Bonnet, P. Grangeat, and I. E. Magnin, "Combined 3D object motion estimation in medical sequences", International Conference on Image Processing, Singapore, Singapore, pp. 1461-1464, 2004.
  54. [QIU-04] B. Qiu, P. Clarysse, J. Montagnat, M. Janier, and D. Vray, "Comparison of 3D Deformable Models For in vivo Measurements of Mouse Embryo from 3D Ultrasound Images", IEEE International Ultrasonics Symposium, Montréal, Canada, pp. 748-751, 2004.
  55. [POLL-04] M. Pollari, T. Lotjonen, T. Makela, N. Pauna, A. Reilhac, and P. Clarysse, "Evaluation of cardiac PET-MRI registration methods using a numerical breathing phantom", IEEE International Symposium on Biomedical Imaging (ISBI), Arlington, Vancouver, USA, pp. 1447-1450, 2004.
  56. [ZHU-03] Y. M. Zhu, J. H. Luo, P. Clarysse, and I. E. Magnin, "Correction des inhomogénéités d'intensité en IRM", Conférences F. Lhermitte - 13e Rendez-Vous de l'ARSEP, Paris, France, pp. 35, 2003.
  57. [MAKE-03b] T. Makela, M. Pollari, J. Lotjonen, N. Pauna, A. Reilhac, P. Clarysse, I. E. Magnin, and T. Katila, "Evaluation and comparison of surface and intensity based rigid registration methods for thorax and cardiac MR and PET images", Second International Workshop on Functional Imaging and Modeling of the Heart, vol. 2674, Lyon, France, Springer Verlag, Publ., pp. 224-233, 2003.
  58. [PAUN-03] N. Pauna, P. Croisille, N. Costes, A. Reilhac, T. Makela, O. Cozar, M. Janier, and P. Clarysse, "A Strategy to quantitatively evaluate MRI/PET cardiac rigid registration methods using a Monte Carlo simulator", Proceedings of FIMH'03 (Second International Workshop on functional Imaging and Modeling of the Heart), vol. 2674, Lyon, France, Springer Verlag, Publ., pp. 194-204, 2003.
  59. [VRAY-02] D. Vray, A. Discher, J. Le Floc'h, W. Mai, P. Clarysse, Q. C. Pham, J. Montagnat, and M. Janier, "3D quantification of ultrasound images : application to mouse embryo imaging in vivo", IEEE International Ultrasonics Symposium (UFFC), Munich, Germany, 2002.
  60. [DYDE-02] I. Dydenko, S. Chehbi, D. Friboulet, P. Clarysse, I. E. Magnin, J. D'hooge, and B. Bijnens, "Using an elastic deformable template for the segmentation of ultrasound cardiac radio frequency images based on the velocity information", IEEE International Ultrasonics Symposium, Munich, Germany, pp. 1706-1709, 2002.
  61. [MAKE-01b] T. Makela, Q. C. Pham, P. Clarysse, J. Lotjonen, K. Laeuerma, H. Hanninen, J. Knuuti, T. Katila, and I. E. Magnin, "A 3D model-based approach for the PET-functional and MR-anatomical cardiac imaging data fusion", FIMH'01, vol. 2230, Some City, Some Country, Springer Verlag, Publ., pp. 83-90, November 15-16, 2001.
  62. [PHAM-01b] Q. C. Pham, F. Vincent, P. Clarysse, P. Croisille, and I. E. Magnin, "A FEM-based deformable model for the 3D segmentation and tracking of the heart in cardiac MRI", Some Congress, Pula, Croatia, pp. 250-254, 2001.
  63. [PHAM-01a] Q. C. Pham, F. Vincent, P. Clarysse, P. Croisille, and I. E. Magnin, "Heart segmentation in MRI using a 3D prior biventricular deformable model", Forum des Jeunes Chercheurs en GBM, Compiègne, France, pp. 70-71, 5-6 Juin, 2001.
  64. [CLAR-01b] P. Clarysse, P. Croisille, L. Bracoud, and I. E. Magnin, "Integrated quantitative analysis of tagged magnetic resonance images", FIMH'01, vol. 2230, Helsinki, Finland, Springer Verlag, Publ., pp. 69-75, November 15-16, 2001.
  65. [MAKE-01a] T. Makela, P. Clarysse, J. Lotjonen, O. Sipila, K. Lauerma, H. Hanninen, J. Nenonen, J. Knuuti, T. Katila, and I. E. Magnin, "A new method for the registration of cardiac PET and MR images using deformable model based segmentation of the main thorax structure", Medical Image Computing and Computer Assisted Intervention (MICCAI'01), Utrecht, The Netherlands, pp. 557–564, 2001.
  66. [SARR-01b] D. Sarrut, S. Miguet, F. Vincent, P. Clarysse, M. Exbrayat, L. Brunie, M. Fleute, L. Desbat, and I. E. Magnin, "Requêtes complexes et hybrides dans des bases d'images médicales distantes. Une illustration en imagerie cardiaque", ASTI'2001, Paris, France, 24-27 mai, 2001.
  67. [CLAR-01a] P. Clarysse, C. Lavorel, A. Glière, P. Grangeat, and I. E. Magnin, "Un modèle de thorax respirant pour l'évaluation d'algorithmes de reconstruction d'organes en mouvement par tomographie virtuelle", GRETSI'01, Toulouse, France, 10-13 septembre, 2001.
  68. [VINC-00a] F. Vincent, P. Clarysse, P. Croisille, and I. E. Magnin, "An elasticity-based model and its application to the estimation of the heart deformation in tagged MRI congres", IEEE International Conference on Image Processing ICIP'00, vol. 1, Vancouver, Canada, pp. 629–632, 2000.
  69. [CLAR-00b] P. Clarysse, D. Hans, P. Croisille, and I. E. Magnin, "Exploratory analysis of the spatio-temporal deformation of the myocardium during systole from tagged MRI", Biomedical Engineering Society Annual Meeting, Seattle, Washington, USA, 2000.
  70. [VINC-00b] F. Vincent, P. Clarysse, P. Croisille, and I. E. Magnin, "Segmentation of the heart from MR image sequences using a 3D active model", Biomedical Engineering Society Annual Meeting, Seattle, Washington, USA, 2000.
  71. [VINC-99] F. Vincent, P. Clarysse, P. Croisille, and I. E. Magnin, "Segmentation et suivi de mouvement d'objets déformables par région active", GRETSI 99, Vannes, France, pp. 163-166, 1999.
  72. [HAN-98a] M. Han, P. Clarysse, P. Croisille, I. E. Magnin, and D. Revel, "Aide à l'analyse de l'évolution spatio-temporelle de la déformation du myocarde", 9ème Forum Jeunes Chercheurs GBM, Brest, France, May 14-15, 1998.
  73. [HAN-98c] M. Han, P. Clarysse, P. Croisille, I. E. Magnin, and D. Revel, "Computer aided diagnosis of the myocardial ischemia based on a spatio-temporal deformation features analysis", Computers In Cardiology, Cleveland, Ohio, USA, 1998.
  74. [BENO-98] H. Benoit-Cattin, A. Planat, P. Joachimsmann, A. Baskurt, P. Clarysse, and I. E. Magnin, "On the coding of active quadtree mesh", IEEE International Conference on Image Processing ICIP'98, vol. 2, Chicago, Illinois, USA, pp. 895-898, 1998.
  75. [BOUD-97] A. Boudraa, and P. Clarysse, "Fast fuzzy gray level image segmentation method", World Congress on Medical Physics and Biomedical Engineering, Nice, France, pp. 686, 1997.
  76. [CLAR-97e] P. Clarysse, P. J. Reissman, S. Lefebvre, O. Baudin, and D. Revel, "Region-based segmentation of multislice and multiphase cardiac Magnetic Resonance Images", World Congress on Medical Physics and Biomedical Engineering, Nice, France, pp. 684, 1997.
  77. [CLAR-97d] P. Clarysse, D. Revel, and I. E. Magnin, "Segmentation d'images par résonance magnétique multi-phases et multi-coupes du coeur par une approche de régions déformables", Rencontres Annuelles du Futuroscope 'les Techniques d'Imagerie Cardiovasculaire du Futur', Poitiers, France, 1997.
  78. [CLAR-97b] P. Clarysse, D. Friboulet, I. E. Magnin, and D. Revel, "Suivi temporel de surfaces déformables - Application à la surface endocardique du VG", VIème Colloque 'de la recherche à la découverte' section 22 du CNRS, Reims, France, 1997.
  79. [CLAR-97c] P. Clarysse, "Traitement d'image et infographie en imagerie du coeur", Séminaire du LIGIM, Lyon, France, 1997.
  80. [CLAR-96] P. Clarysse, "Recent and Future Trends in Cardiac Image Processing", IEEE EMBS International Summer School on Biomedical Imaging, Ile de Berder, France, 1996.
  81. [CLAR-95a] P. Clarysse, F. Poupon, B. Barbier, and I. E. Magnin, "3D boundary extraction of the left ventricle by a deformable model with a priori information", IEEE Int. Conf. Image Processing, Washington, USA, pp. 492–495, October, 1995.
  82. [CLAR-95b] P. Clarysse, O. Jaouen, I. E. Magnin, and J. M. Morvan, "Interpolation 3D des parois cardiaques à partir de données discrètes", Jour. Thématiques GDR TdSI - GRAISHYM : Mouvement 3D d'objets non rigides, Lille, France, pp. 4 pages, Mai, 1995.
  83. [SOTT-95] F. Sottilini, P. Clarysse, J. P. Roux, D. Revel, and I. E. Magnin, "LV myocardial wall motion estimation with tagged cine MRI (SPAMM)", Computers in Cardiology, Vienna, Austria, pp. 529–532, 1995.
  84. [CLAR-94b] P. Clarysse, O. Jaouen, I. E. Magnin, and J. M. Morvan, "3D representation and deformation analysis of the heart walls from X-ray and MR images", Computers in Cardiology, Bethesda, USA, pp. 657–660, 1994.
  85. [CLAR-94c] P. Clarysse, "Evolution temporelle de la courbure 3D des surfaces des parois cardiaques", V Colloque'Thérapeutique et médicaments, de la recherche à la découverte', section 22 du CNRS, Montpellier, France, 1994.
  86. [GORC-94b] J. M. Gorce, D. Friboulet, P. Clarysse, and I. E. Magnin, "Three dimensional velocity field estimation of moving cardiac walls", Computers in Cardiology, Bethesda, USA, pp. 489–492, 1994.
  87. [CLAR-94a] P. Clarysse, D. Friboulet, and I. E. Magnin, "Time evolution analysis of differential features on 3D surfaces of the heart walls", IEEE Medical Imaging Conf., Norfolk, USA, pp. 1807–1811, 1994.
  88. [CLAR-93a] P. Clarysse, D. Friboulet, and I. E. Magnin, "Calcul de la courbure 3D des parois cardiaques en imagerie dynamique", IVème Colloque 'Thérapeutique et Médicaments, de la recherche à la découverte', Section 22 du Comité National de la Recherche Scientifique, Strasbourg, France, 1993.
  89. [CLAR-93b] P. Clarysse, D. Friboulet, and I. E. Magnin, "Curvature assessment of the heart walls in 3D. Acquisition, segmentation, quantification", Proc Computers in Cardiology, London, UK, pp. 607–610, September 5-8, 1993.
Conference Proceedings
  1. [CLAR-08] , Special Issue of Mathematical Modelling of Natural Phenomena on 'Medical Imaging', , vol. 3, no. 6: EDP Sciences, Publ, 2008.
  2. [MAGN-03] , Proceedings of the Second International Workshop on Functional Imaging and Modeling of the Heart (FIMH'03), LNCS 2674, 300 pages, , Some City, Some Country, Springer Verlag, Publ, 2003.
  3. [KATI-01] , "Proceedings of the First International Workshop on Functional Imaging and Modeling of the Heart (FIMH'01), LNCS 2432, 158 pages", Lecture Notes in Computer Sciences, LNCS 2432, Some City, Some Country, Springer Verlag, Publ., 2001.
Magazine Article
  1. [CLAR-11a] P. Clarysse, "Et l'image devient animée", CNRS Le journal, no. 260-261, pp. 22, 09-10/2011.
Thesis
  1. [VAND-10] J. Vandemeulebroucke, Lung Motion Modelling and Estimation for Image Guided Radiation Therapy, : INSA de Lyon, 2010 .
Miscellaneous
  1. [GLAT-09c] T. Glatard, S. Camarasu-Pop, H. Benoit-Cattin, P. Clarysse, J. Montagnat, J. Moscicki, S. Olabarriaga, and D. Sarrut, Integrating pilot-jobs, workflows and virtual resource browser to foster medical image analysis on EGEE, , Catania, Italie, Mar, 2009.
  2. [SARR-01] M. Sarreau, S. Miguet, F. Vincent, P. Clarysse, M. Exbrayat, L. Brunie, M. Fleute, L. Desbat, and I. E. Magnin, Requêtes complexes et hybrides dans des bases d'images médicales distantes. Une illustration en imagerie cardiaque, , 2001.
  3. [CLAR-00c] P. Clarysse, D. Hans, P. Croisille, and I. E. Magnin, Exploratory analysis of the spatio-temporal deformation of the myocardium during systole from tagged MRI, , 2000.
  4. [VINC-00c] F. Vincent, P. Clarysse, P. Croisille, and I. E. Magnin, Segmentation of the heart from MR image sequences using a 3D active model, , 2000.
  5. [CLAR-97f] P. Clarysse, D. Friboulet, I. E. Magnin, and D. Revel, Suivi temporel de surfaces déformables - Application à la surface endocardique du VG, , 1997.
  6. [CLAR-97g] P. Clarysse, Traitement d'image et infographie en imagerie du coeur, , 1997.
  7. [CLAR-96b] P. Clarysse, Recent and Future Trends in Cardiac Image Processing, , 1996.
  8. [CLAR-94d] P. Clarysse, Evolution temporelle de la courbure 3D des surfaces des parois cardiaques, , 1994.
HDR
  1. [CLAR-05] P. Clarysse, Analyse d'images cardiaques assistée par les modèles, : INSA Lyon / Université Claude-Bernard Lyon I, 2005.

    Axel L. (rap.), Ayache N. (rap.), Herment A. (rap.), Pousin J., Bittoun J., Revel D. et Magnin I.E.

Invited Conference
  1. [CLAR-09] P. Clarysse, "Analyse d'images cardiaques : de l'acquisition à la quantification", Séminaire Modélisation, simulation et imagerie du myocarde, Laboratoire MAP5 (Université Paris Descartes) et action CardioSense3D (INRIA), Paris, 2009.
  2. [CLAR-09a] P. Clarysse, "Analyse d'images médicales et modélisation: de l'acquisition à la quantification", Séminaire du GDR STIC-Santé, Thème F, Modélisation et simulation d'organes, Paris, 2009.
  3. [CLAR-08b] P. Clarysse, "Patient specific modeling and analysis of cardiac images", Seminars of the Computer Vision Center, Universitat Autònoma de Barcelona, Barcelona, 2008.
  4. [CLAR-03] P. Clarysse, "Applications en imagerie cardio-vasculaire de la fusion d'images", Journées de Recherche en Imagerie Médicale, Nantes, France, 2003.
  5. [CLAR-97h] P. Clarysse, D. Revel, and I. E. Magnin, "Segmentation d'images par résonance magnétique multi-phases et multi-coupes du coeur par une approche de régions déformable", Rencontres Annuelles du Futuroscope 'les Techniques d'Imagerie Cardiovasculaire du Futur', Poitiers, France, 1997.