Accueil

Publications

Exporter 134 résultats :
Book Chapter
  1. [DOUE-05x] P. Douek, M. Hernández Hoyos, and M. Orkisz, "Image Processing in Contrast-Enhanced MR Angiography", Magnetic Resonance Angiography, Milan, Italy, Springer, pp. 55-64, 2005 .
  2. [ORKI-04] M. Orkisz, and M. Hernández Hoyos, "Podstawy technik segmentacji stosowanych w przetwarzaniu obrazow 3D naczyn krwionosnych", Polska Akademia Nauk Biocybernetyka i Inzynieria Biomedyczna 2000, Obrazowanie biomedyczne, vol. 8, Warszawa, Poland, Akademicka Oficyna Wydawnicza EXIT, Publ., pp. 351–372, 2004.
  3. [ORKI-02d] M. Orkisz, and M. Hernández Hoyos, "Développement récent dans le traitement d'images : principes des techniques de segmentation", Angiographie par Résonance Magnétique: Masson, Publ., pp. 62–73, 2002.
Journal Article
  1. [HERN-12b] M. Hernández Hoyos, E. E. Dávila Serrano, E. M. Correa Agudelo, J. S. Torres González, R. A. Corredor Jérez, F. A. Gutiérrez Ossa, L. Flórez-Valencia, C. Mouton, and M. Orkisz, "CreaTools: una plataforma para desarrollo de software de procesamiento de imágenes médicas. Aplicación a la segmentación de arterias coronarias y a la detección automática de lesiones en imágenes de angioTAC", Revista Colombiana de Radiología, In Press.
  2. [ZAHN-13] G. Zahnd, M. Orkisz, A. Sérusclat, P. Moulin, and D. Vray, "Evaluation of a Kalman-based block matching method to assess the bi-dimensional motion of the carotid artery wall in B-mode ultrasound sequences", Medical Image Analysis, vol. 17, no. 5, pp. 573–585, 2013 .
  3. [ZULU-11a] M. A. Zuluaga, I. E. Magnin, M. Hernández Hoyos, E. J. F. Delgado Leyton, F. Lozano, and M. Orkisz, "Automatic detection of abnormal vascular cross-sections based on Density Level Detection and Support Vector Machines", Int J Computer Assist Radiol Surg, vol. 6, no. 2, pp. 163-174, 2011 .
  4. [HAME-11] K. Hameeteman, M. A. Zuluaga, M. Freiman, L. Joskowicz, O. Cuisinaire, L. Flórez Valencia, M. A. Gülsün, K. Krissian, J. Mille, W. C. K. Wong, et al., "Evaluation Framework for Carotid Bifurcation Lumen Segmentation and Stenosis Grading", Med Image Anal, vol. 15, no. 4, pp. 477-488, August 2011 .
  5. [ZULU-10d] M. A. Zuluaga, M. Orkisz, E. J. F. Delgado Leyton, V. Doré, A. Morales Pinzón, and M. Hernández Hoyos, "Adaptación del algoritmo MARACAS para la segmentación de la bifurcación de la arteria carótida y cuantificación de estenosis en imágenes TAC", Actas Biol Colombianas, vol. 15, no. 3, pp. 195 - 210, 2010 .  Téléchargement: 
  6. [FLOR-10a] L. Flórez Valencia, J. Azencot, and M. Orkisz, "Carotid arteries segmentation in CT images with use of a right generalized cylinder model", Revista Colombiana de Computación, vol. 11, no. 2, pp. 79-93, 2010 .
  7. [ORLO-09] P. Orlowski, and M. Orkisz, "Efficient computation of Hessian-based enhancement filters for tubular structures in 3D images", Innov Tech Biol Med - RBM, vol. 30, pp. 128–132, 2009 .
  8. [ZULU-09e] M. A. Zuluaga, M. Orkisz, and M. Hernández Hoyos, "Mejoramiento de la segmentación arterial coronaria a traves del modelamiento del volumen parcial en imágenes TAC", Revista Colombiana de Radiología, vol. 20, no. 3, pp. 2702-2707, 2009 .
  9. [SCHA-09] M. Schaap, C. T. Metz, T. van Walsum, A. G. van der Giessen, A. C. Weustink, N. R. Mollet, C. Bauer, H. Bogunović, C. Castro, X. Deng, et al., "Standardized evaluation methodology and reference database for evaluating coronary artery centerline extraction algorithms", Med Image Anal, vol. 13, no. 5, pp. 701–714, 2009 .
  10. [ORKI-08] M. Orkisz, L. Flórez Valencia, and M. Hernández Hoyos, "Models, algorithms and applications in vascular image segmentation", Mach Graph Vision, vol. 17, no. 1/2, pp. 5-33, 2008 .
  11. [FLOR-07b] L. Flórez Valencia, J. Montagnat, and M. Orkisz, "3D models for vascular lumen segmentation in MRA images and for artery-stenting simulation", Innov Tech Biol Med - RBM, vol. 28, no. 2, pp. 65-71, 2007 .
  12. [CANT-07c] D. Cantor Rivera, M. Orkisz, J. A. Arias, L. F. Uriza, and M. Hernández Hoyos, "Modelamiento en 3D de patologías vasculares a partir de imágenes de resonancia magnética sustraídas", Revista Colombiana de Radiología, vol. 18, no. 4, pp. 2225-2232, 2007 .  Téléchargement: 
  13. [CARR-07] J. F. Carrillo, M. Hernández Hoyos, E. E. Dávila Serrano, and M. Orkisz, "Recursive tracking of vascular tree axes in 3D medical images", Int J Comput Assisted Radiol Surg, vol. 1, no. 6, pp. 331-339, 2007 .
  14. [HERN-06b] M. Hernández Hoyos, J. M. Serfaty, A. Maghiar, C. Mansard, M. Orkisz, I. E. Magnin, and P. Douek, "Evaluation of semi-automatic arterial stenosis quantification", Int J Comput Assisted Radiol Surg, vol. 1, no. 3, pp. 167-175, 2006 .
  15. [CARR-06d] J. F. Carrillo, M. Hernández Hoyos, E. E. Dávila Serrano, and M. Orkisz, "Segmentación y visualización arterial en ARM y TC", Revista Colombiana de Radiología, vol. 17, no. 4, pp. 2028-2036, 2006 .  Téléchargement: 
  16. [HERN-06a] M. Hernández Hoyos, P. Orlowski, E. Piatkowska-Janko, P. Bogorodzki, and M. Orkisz, "Vascular centreline extraction in 3D MR angiograms applied to select acquisition plane for blood flow measurement by phase contrast MRI", Int J Comput Assisted Radiol Surg, vol. 1, no. 1, pp. 51-61, 2006 .
  17. [HERN-05] M. Hernández Hoyos, M. Orkisz, P. Douek, and I. E. Magnin, "Assessment of carotid artery stenoses in 3D contrast-enhanced magnetic resonance angiography, based on improved generation of the centerline", Mach Graph Vision, vol. 14, no. 4, pp. 349-378, 2005 .
  18. [HADD-05c] R. Haddad, P. Clarysse, M. Orkisz, D. Revel, and I. E. Magnin, "A realistic anthropomorphic numerical model of the beating heart", Innov Tech Biol Med - RBM, vol. 26, no. 4, pp. 270-272, 2005 .
  19. [FLOR-04b] L. Flórez Valencia, J. Montagnat, and M. Orkisz, "3D graphical models for vascular-stent pose simulation", Mach Graph Vision, vol. 13, no. 3, pp. 235-248, 2004 .
  20. [MANS-04] C. Mansard, E. Canet-Soulas, A. Anwander, L. Chaabane, B. Neyran, J. M. Serfaty, I. E. Magnin, P. Douek, and M. Orkisz, "Quantification of multi-contrast vascular MR Images with the NLSnake, an active contour model : in vitro validation and in vivo evaluation", Magn Reson Med, vol. 51, no. 2, pp. 370-379, 2004 .
  21. [AZEN-03] J. Azencot, and M. Orkisz, "Deterministic and Stochastic State Model of Right Generalized Cylinder (RGC-sm): Application in Computer Phantoms Synthesis", Graphical Models, vol. 65, pp. 323-350, 2003 .
  22. [HERN-02a] M. Hernández Hoyos, M. Orkisz, P. Puech, C. Mansard, P. Douek, and I. E. Magnin, "Computer assisted analysis of 3D MRA images", Radiographics, vol. 22, pp. 421-436, 2002 .
  23. [ORKI-02a] M. Orkisz, A. Frery, B. Durning, O. Chapet, F. Mornex, and I. E. Magnin, "Feasibility of motion estimation and tracking in portal images during treatment of pulmonary cancers by conformal radiotherapy", Image Process Comm, vol. 7, no. 3-4, pp. 63–76, 2002 .  Téléchargement: orkisz_IPC_2002.pdf (354.04 Ko)
  24. [MARC-02] B. Marchand, P. Douek, P. Robert, C. Corot, J. P. Roux, P. Adeleine, M. Hernández Hoyos, Y. Crémillieux, M. Orkisz, and E. Canet-Soulas, "Standardized MR protocol for the evaluation of MRA sequences and/or contrast agents effects in high-degree arterial stenosis analysis", Magma, vol. 14, no. 3, pp. 259–267, 2002 .
  25. [MARC-01a] B. Marchand, M. Hernández Hoyos, M. Orkisz, and P. Douek, "Diagnostic des sténoses de l'artère rénale en Angiographie par Résonance Magnétique et appréciation du degré de sténose", J Mal Vasc, vol. 25, no. 5, pp. 312-320, 2001.
  26. [ORKI-01a] M. Orkisz, and M. Hernández Hoyos, "Models for 3D vascular image analysis", J Med Inform Technol, vol. 2, no. 1, pp. 13-22, 2001 .  Téléchargement: 
  27. [ORKI-00a] M. Orkisz, M. Hernández Hoyos, P. Douek, and I. E. Magnin, "Advances of blood vessel morphology analysis in 3D magnetic resonance images", Mach Graph Vision, vol. 9, no. 1/2, pp. 463–471, 2000 .  Téléchargement: 
  28. [ORKI-99a] M. Orkisz, M. Bourlion, G. Gimenez, and T. A. Flam, "Real-time target tracking applied to improve fragmentation of renal stones in extra-corporeal lithotripsy", Mach Vision Appl, vol. 11, pp. 138-144, 1999 .
  29. [ORKI-98b] M. Orkisz, T. Farchtchian, M. Bourlion, G. Gimenez, H. Redarce, T. A. Flam, D. Saighi, and B. Debré, "Application du traitement d'images au suivi en temps réel de calculs urinaires en lithotritie extra-corporelle", Innov Tech Biol Med, vol. 19 Spe, no. 4, pp. 315-323, 1998.
  30. [ORKI-98c] M. Orkisz, T. Farchtchian, D. Saighi, M. Bourlion, N. Thiounn, G. Gimenez, B. Debré, and T. A. Flam, "Image-based renal stone tracking to improve efficacy in extra-corporeal lithotripsy", J Urol, vol. 160, pp. 1237-1240, 1998 .
  31. [ORKI-97a] M. Orkisz, C. Bresson, I. E. Magnin, O. Champin, and P. Douek, "Improved vessel visualization in MR angiography by non-linear anisotropic filtering", Magn Reson Med, vol. 37, pp. 914-919, 1997 .
  32. [ORKI-96c] M. Orkisz, and P. Clarysse, "Estimation du flot optique en présence de discontinuités : une revue", Traitement du Signal, vol. 13, no. 5, pp. 489-513, 1996.
  33. [ORKI-92] M. Orkisz, "Localisation d'objets mobiles dans des scènes naturelles filmées par une caméra fixe", Traitement du Signal, vol. 9, no. 4, pp. 325–346, 1992.
Conference Paper
  1. [GUTI-12] F. A. Gutiérrez, R. A. Corredor, M. A. Zuluaga, M. Orkisz, and M. Hernández Hoyos, "Aprendizaje de máquinas basado en árboles aleatorios para la segmentación automática de la arteria carótida en imágenes de TAC", Seminario de Ingeniería Biomédica – SIB, Bogotá, Colombia, pp. web-online, 2012.
  2. [FLOR-12b] L. Flórez-Valencia, M. Orkisz, R. A. Corredor Jerez, J. S. Torres González, E. M. Correa Agudelo, C. Mouton, and M. Hernández Hoyos, "Coronary artery segmentation and stenosis quantication in CT images with use of a right generalized cylinder model", MICCAI Workshop 3D Cardiovascular Imaging Segmentation Challenge, Nice, France, pp. 8 in electronic proc., 10/2012 .  Téléchargement: 
  3. [PRIE-12c] J. C. Prieto, C. Revol-Muller, C. Odet, M. Orkisz, and M. Hernández Hoyos, "CreaLungs: a variational region growing method to segment pulmonary vascular trees", ISBI VESSEL12 Challenge, Barcelona, Spain, 05/2012 .  Téléchargement: 
  4. [DAVI-12b] E. E. Dávila Serrano, L. Guigues, F. Cervenansky, S. Camarasu-Pop, J. G. Riveros Reyes, L. Flórez-Valencia, M. Hernández Hoyos, and M. Orkisz, "CreaTools: a framework to develop medical image processing software. Application to simulate pipeline stent deployment in intracranial vessels with aneurysms", Int. Conf. Comput. Vision. Graphics., vol. LNCS 7594, Warsaw, Poland, Springer, pp. 55-62, 09/2012 .
  5. [DAVI-12a] E. E. Dávila Serrano, L. Guigues, J. P. Roux, F. Cervenansky, S. Camarasu-Pop, J. G. Riveros Reyes, L. Flórez-Valencia, M. Hernández Hoyos, and M. Orkisz, "CreaTools: applications and development framework for medical image-processing software", ISBI Workshop on Open Source Medical Image Analysis Software, Barcelona, Spain, 05/2012 .  Téléchargement: 
  6. [DAVI-12c] E. E. Dávila Serrano, L. Guigues, J. P. Roux, F. Cervenansky, C. Mouton, S. Camarasu-Pop, L. Flórez-Valencia, M. Hernández Hoyos, and M. Orkisz, "CreaTools: applications and development framework for medical image-processing software", Libre Software Meeting, Geneva, 07/2012 .
  7. [HERN-12a] M. Hernández Hoyos, E. E. Dávila Serrano, E. M. Correa Agudelo, J. S. Torres González, R. A. Corredor Jérez, F. A. Gutiérrez Ossa, L. Flórez-Valencia, C. Mouton, and M. Orkisz, "CreaTools: una plataforma para desarrollo de software de procesamiento de imágenes médicas. Aplicación a la segmentación de arterias coronarias y a la detección automática de lesiones en imágenes de angioTAC", Congreso Colombiano de Radiología, Cartagena de Indias, Colombie, 08/2012.
  8. [ZULU-12] M. A. Zuluaga, M. Hernández Hoyos, J. C. Dávila, L. F. Uriza Carrasco, and M. Orkisz, "A fast lesion registration to assist coronary heart disease diagnosis in CTA images", Int. Conf. Comput. Vision Graph., vol. LNCS 7594, Warsaw, Poland, Springer, pp. 710-717, 09/2012 .
  9. [ZAHN-12b] G. Zahnd, M. Orkisz, A. Sérusclat, and D. Vray, "Longitudinal motion of the carotid artery wall and speckle decorrelation issue: accurate estimation using a Kalman-based speckle tracking method", IEEE Ultrasonics Symposium, Dresden (Germany), 2012.
  10. [CORR-12] R. A. Corredor, M. A. Zuluaga, F. Lozano, M. Orkisz, and M. Hernández Hoyos, "Segmentación de lumen arterial mediante Support Vector Machines en imágenes de TAC", Seminario de Ingeniería Biomédica – SIB, Bogotá, Colombia, pp. web-online, 2012.
  11. [PRIE-12e] J. C. Prieto, C. Pérez Romanello, V. Pérez Romanello, C. Revol-Muller, C. Odet, M. Orkisz, and M. Hernández Hoyos, "Segmentación del árbol vascular pulmonar", XXXVIII Conferencia Latinoamericana en Informática (CLEI), Medellín, Colombia, pp. 1-7, 10/2012 .
  12. [ORTE-12] D. C. Ortega, M. Orkisz, F. Lozano, and M. Hernández Hoyos, "Uso de Support Vector Machines para la segmentación de costillas en imágenes de TAC", Seminario de Ingeniería Biomédica – SIB, Bogotá, Colombia, pp. web-online, 2012.
  13. [FLOR-12a] L. Flórez-Valencia, E. E. Dávila Serrano, J. G. Riveros Reyes, O. Bernard, J. Latt, O. Malaspinas, B. Chopard, G. Courbebaisse, and M. Orkisz, "Virtual deployment of pipeline flow diverters in cerebral vessels with aneurysms to understand thrombosis", MICCAI-Workshop on Computer Assisted Stenting, Nice, France, pp. 49-56 (electronic proc.), 10/2012 .  Téléchargement: 
  14. [GUTI-11] F. A. Gutiérrez, D. C. Ortega, M. Orkisz, L. F. Uriza, and M. Hernández Hoyos, "Automatic segmentation of pulmonary arterial tree in Computed Tomography images", Sexto Congreso Colombiano de Computación (6CCC), Manizales, Colombia, pp. 6 in electronic proc., May, 2011 .
  15. [ZAHN-11a] G. Zahnd, M. Orkisz, A. Sérusclat, and D. Vray, "Estimation de la trajectoire 2D des parois de l'artère carotide, dans des séquences d'images échographiques, par une approche conjointe de segmentation et de suivi de speckle guidé", GRETSI, Bordeaux, France, pp. 4 pages in CD, Septembre, 2011.
  16. [ZULU-11b] M. A. Zuluaga, D. Hush, E. J. F. Delgado Leyton, M. Hernández Hoyos, and M. Orkisz, "Learning from Only Positive and Unlabeled Data to Detect Lesions in Vascular CT Images", Medical Image Computing and Computer Assisted Interventions - MICCAI , vol. LNCS 6893, Part III, Toronto, Canada, Springer, Heidelberg, pp. 9-16, September, 2011 .
  17. [ZAHN-11b] G. Zahnd, M. Orkisz, A. Sérusclat, and D. Vray, "Minimal-path contours combined with speckle tracking to estimate 2D displacements of the carotid artery wall in B-mode imaging", IEEE Int. Ultrasonics Symposium, Orlando, Florida, USA, pp. 732-735, October, 2011.
  18. [ZULU-11c] M. A. Zuluaga, P. Dong, A. Pacureanu, M. Orkisz, and F. Peyrin, "Minimum Cost Path Approach for the Segmentation of Bone Canalicular Network from Nano-CT Images", IEEE Nuclear Science Symposium and Medical Imaging Conference, Valencia, Spain, 10/2011 .  Téléchargement: 
  19. [FLOR-10b] L. Flórez Valencia, J. Azencot, and M. Orkisz, "Algorithm for blood-vessel segmentation in 3D images based on a right generalized cylinder model: application to carotid arteries", Int Conf Comput Vision Graphics, vol. LNCS 6374, no. 1, Warsaw, Poland, Springer, Heidelberg, pp. 27-34, September, 2010 .
  20. [ZULU-10c] M. A. Zuluaga, E. J. F. Delgado Leyton, M. Hernández Hoyos, and M. Orkisz, "Can the coronary artery centerline extraction in computed tomography images be improved by use of a partial volume model?", Int Conf Comput Vision Graphics, vol. LNCS 6375, no. 2, Warsaw, Poland, Springer, Heidelberg, pp. 385-392, September, 2010 .
  21. [FLOR-10c] L. Flórez Valencia, J. Azencot, and M. Orkisz, "Carotid arteries segmentation in CT images with use of a right generalized cylinder model", Quinto Congreso Colombiano de Computación (5CCC), Cartagena de Indias, Colombia, pp. 6 in electronic proc., April, 2010.
  22. [MORA-10] A. Morales Pinzón, M. Orkisz, S. Teillaud, J. A. Sánchez, and M. Hernández Hoyos, "Extracción semi-automática de ejes de canales de corales", Sixto Seminario Internacional de Procesamiento de y Análisis de Imágenes Médicas, Bogotá, Colombia, pp. 10 pages in electronic proceedings, November 2010 . Abstract  Téléchargement: 
  23. [ZULU-10e] M. A. Zuluaga, E. J. F. Delgado Leyton, M. Hernández Hoyos, and M. Orkisz, "Feature selection for SVM-based vascular anomaly detection", MICCAI Workshop on Medical Computer Vision, vol. LNCS 6533, Beijing, China, Springer, Berlin Heidelberg, pp. 141-152, September, 2010 .
  24. [ZULU-10b] M. A. Zuluaga, M. Orkisz, M. Hernández Hoyos, F. Lozano Martínez, and I. E. Magnin, "Towards vascular abnormality detection: an SVM approach", 24rth CARS - Comput Assisted Radiol Surg, vol. 5-suppl.1, Geneva, Switzerland, Springer, pp. S355-6 (abstract), June, 2010.
  25. [ZULU-09c] M. A. Zuluaga, M. Orkisz, E. J. F. Delgado Leyton, V. Doré, A. Morales Pinzón, and M. Hernández Hoyos, "Adaptación del algoritmo MARACAS para la segmentación de la bifurcación de la arteria carótida y cuantificación de estenosis en imágenes TAC", Quinto Seminario de Ingeniería Biomédica y Quinto Seminario Internacional de Procesamiento de y Análisis de Imágenes Médicas, Bogota, Colombia, pp. 5 in electronic proc., November, 2009.
  26. [ZULU-09b] M. A. Zuluaga, M. Orkisz, E. J. F. Delgado Leyton, V. Doré, A. Morales Pinzón, and M. Hernández Hoyos, "Adaptations of MARACAS algorithm to the segmentation of the carotid bifurcation and stenosis quantification in CTA images", MICCAI Workshop - 3D Segmentation in the Clinic: A Grand Challenge III, London, GB, Midas Journal, pp. 7 on-line, September, 2009 .
  27. [FLOR-09] L. Flórez Valencia, J. Azencot, and M. Orkisz, "Carotid arteries segmentation in CT images with use of a right generalized cylinder model", MICCAI Workshop - 3D Segmentation in the Clinic: A Grand Challenge III, London, GB, Midas Journal, pp. 8 on-line, September, 2009 .
  28. [ZULU-09d] M. A. Zuluaga, M. Hernández Hoyos, and M. Orkisz, "Evaluación del efecto de volumen parcial en imágenes TAC para el mejoramiento de la segmentación arterial coronaria", Quinto Seminario de Ingeniería Biomédica y Quinto Seminario Internacional de Procesamiento de y Análisis de Imágenes Médicas, Bogota, Colombia, pp. 4 in electronic proc., November, 2009.
  29. [ZULU-09a] M. A. Zuluaga, M. Hernández Hoyos, and M. Orkisz, "Evaluation of partial volume effects in computer tomography for the improvement of coronary artery segmentation", 23rd CARS - Comput Assisted Radiol Surg, vol. 4-suppl.1, Berlin, Germany, Springer, pp. S40-1 (abstract), June, 2009.
  30. [BENM-09] F. Benmansour, L. D. Cohen, E. E. Dávila Serrano, P. Douek, M. Orkisz, and M. A. Zuluaga, "New Interactive Methods for Tubular Structure Segmentation on Medical Images", 12th ISRACAS - Israeli Symposium on Computer-Aided Surgery, Medical Robotics, and Medical Imaging, Tel-Aviv, Israel, pp. 10 in CD, 05/2009 .  Téléchargement: 
  31. [HERN-08] M. Hernández Hoyos, M. A. Zuluaga, M. Lozano, J. C. Prieto, P. Douek, I. E. Magnin, and M. Orkisz, "Coronary centerline tracking in CT images with use of an elastic model and image moments", MICCAI Workshop - Grand Challenge Coronary Artery Tracking, New York City, USA, Midas Journal, pp. 8 on-line: http://hdl.handle.net/10380/1401, September, 2008 .
  32. [ARDI-08] N. Ardila, M. Hernández Hoyos, S. Teillaud, M. Orkisz, E. E. Dávila Serrano, O. Beuf, J. Adrien, F. Martinez, C. Rey, and J. A. Sanchez, "Estudio no destructivo de los canales internos de octocorales por medio del análisis de imágenes biolgicas y medicas", XII Seminario Nacional de Ciencia y Tecnología del Mar, vol. 1, Santa Marta, Colombia, pp. 155, 2008.
  33. [BALT-07] M. Baltaxe Milwer, L. Flórez Valencia, M. Hernández Hoyos, I. E. Magnin, and M. Orkisz, "Fast marching contours for the segmentation of vessel lumen in CTA cross-sections", Conf Proc IEEE Eng Med Biol Soc, Lyon, France, IEEE, pp. 791-794, 2007 .
  34. [FLOR-07a] L. Flórez Valencia, M. Baltaxe Milwer, M. Hernández Hoyos, F. Vincent, P. Douek, I. E. Magnin, and M. Orkisz, "Fast marching level-sets for the extraction of vascular cross-sectional contours in CT angiography images", 21st CARS - Comput Assist Radiol Surg, vol. 2-suppl.1, Berlin, Germany, Springer, pp. S449-S450 (abstract), 2007.
  35. [CANT-07a] D. Cantor Rivera, M. Orkisz, and M. Hernández Hoyos, "Generación de modelos arteriales tridimensionales a partir de imágenes de resonancia magnética (IRM)", XXXIII Conferencia Latinoamericana de Informática (CLEI), San José, Costa Rica, UNED, PEM, Oficina de Audiovisuales, ISBN: 978-9968-9678-9-1, 2007.
  36. [CANT-07b] D. Cantor Rivera, M. Orkisz, L. F. Uriza, and M. Hernández Hoyos, "Generación de modelos arteriales tridimensionales a partir de imágenes de resonancia magnética (IRM)", XXXII Congreso Colombiano de Radiología, Cartagena de Indias, Colombia, 2007.
  37. [CANT-07d] D. Cantor Rivera, M. Orkisz, L. F. Uriza Carrasco, and M. Hernández Hoyos, "Generación de modelos vasculares específicos al paciente a partir de IRM 3D usando el algoritmo de fast-marching", Cuarto Seminario de Ingeniería Biomédica y Quinto Seminario Internacional de Procesamiento de y Análisis de Imágenes Médicas, Bogota, Colombia, pp. 2 in electronic proc., November, 2007.
  38. [CARR-06a] J. F. Carrillo, M. Hernández Hoyos, and M. Orkisz, "Automatic vascular tree segmentation", XXXII Conferencia Latinoamericana de Informática CLEI, Santiago de Chile, Chile, Universidad de Santiago, ISBN: 956-303-028-1, pp. 174 (abstract; 8 p. full paper on CD), August, 2006.
  39. [CARR-06c] J. F. Carrillo, M. Hernández Hoyos, E. E. Dávila Serrano, and M. Orkisz, "Segmentación y visualización arterial en ARM y TAC", XXXI Congreso Colombiano de Radiología, Cartagena, Colombia, Asociación Colombiana de Radiología, ISSN: 1909-5112, pp. 21-22 (abstract), October, 2006.
  40. [FLOR-06a] L. Flórez Valencia, J. Azencot, F. Vincent, M. Orkisz, and I. E. Magnin, "Segmentation and quantification of blood vessels in 3d images using a right generalized cylinder state model", Int. Conf. Image Processing, Atlanta, GA, USA, pp. 2441-2444, October, 2006 .
  41. [CARR-06b] J. F. Carrillo, E. E. Dávila Serrano, M. Hernández Hoyos, and M. Orkisz, "Vascular tree extraction from 3D images", 20th CARS - Computer Assisted Radiology and Surgery, Osaka, Japan, Springer, pp. 462 (abstract), June, 2006 .
  42. [CARR-05] J. F. Carrillo, M. Orkisz, and M. Hernández Hoyos, "Extraction of 3D vascular tree skeletons based on the analysis of connected components evolution", 11th Int. IAPR Conf. Computer Analysis of Images and Patterns (CAIP 2005), vol. 3691, Versailles, France, Springer Verlag, Publ., pp. 604-611, 2005 .
  43. [HERN-05a] M. Hernández Hoyos, P. Orlowski, E. Piatkowska-Janko, P. Bogorodzki, and M. Orkisz, "Optimisation of acquisition plane selection for blood flow measurement by phase contrast MRI, based on vascular centreline extraction in 3D MR angiograms", Forum de Recherche en Génie Biologique et Médical, Nancy, France, pp. 86-87, 2005.
  44. [HADD-05d] R. Haddad, P. Clarysse, M. Orkisz, D. Revel, and I. E. Magnin, "A Realistic Anthropomorphic Dynamic Heart Phantom", Computers in Cardiology, Lyon, France, pp. 801-804, 2005.
  45. [HADD-05b] R. Haddad, P. Clarysse, M. Orkisz, D. Revel, and I. E. Magnin, "A realistic anthropomorphic numerical model of the beating heart", Functional Imaging and Modeling of the Heart, Barcelona, Spain, pp. 384-393, 2005 .
  46. [HADD-05a] R. Haddad, P. Clarysse, M. Orkisz, D. Revel, and I. E. Magnin, "Un modèle numérique anthropomorphique du coeur battant", Forum de Recherche en Génie Biologique et Médical (JSTIM-FRGBM'05), vol. 26, no. 4, Nancy, France, pp. 77-78, 2005.
  47. [HERN-05b] M. Hernández Hoyos, P. Orlowski, E. Piatkowska-Janko, P. Bogorodzki, and M. Orkisz, "Vascular centreline extraction in 3D MR angiograms to optimise acquisition plane for blood flow measurement by phase contrast MRI", 19th CARS - Comput Assisted Radiol Surg, Int Congress Series , vol. 1281, Berlin, Germany, Elsevier, pp. 345-350, 2005 .
  48. [FLOR-04a] L. Flórez Valencia, F. Vincent, and M. Orkisz, "Fast 3D pre-segmentation of arteries in computed tomography angiograms", Int Conf Comput Vision Graphics, Computational Imaging and Vision, vol. 32, Warsaw, Poland, Springer Verlag, Publ., pp. 361-366, 2004 .
  49. [BARG-04] P. Bargiel, M. Orkisz, A. Przelaskowski, E. Piatkowska-Janko, P. Bogorodzki, and T. Wolak, "Optimal plane search method in blood flow measurements by magnetic resonance imaging", Optical Methods, Sensors, Image Processing, and Visualization in Medicine, vol. SPIE 5505, Gdansk, Poland, pp. 135-138, 2004 .
  50. [FLOR-02] L. Flórez Valencia, J. Montagnat, and M. Orkisz, "3D graphical models for vascular-stent pose simulation", Int Conf Comput Vision Graphics, Zakopane, Poland, pp. 259-266, 2002.
  51. [HERN-02c] M. Hernández Hoyos, M. Orkisz, I. E. Magnin, and P. Douek, "Automated generation of vessel centerlines and volumetric assessment of stenoses from MRA images", XIII Int. Workshop on MRA, vol. Abstr, Essen, Germany, pp. 140, 2002.
  52. [HERN-02b] M. Hernández Hoyos, M. Orkisz, I. E. Magnin, and P. Douek, "Quantification de la sténose artérielle dans des images ARM 3D fondée sur l'extraction automatique de l'axe central du vaisseau", Journées Françaises de Radiologie, vol. Abstr, Paris, France, pp. 1423, 2002.
  53. [ORKI-02c] M. Orkisz, and M. Hernández Hoyos, "Suivi de vaisseaux sanguins dans des images 3D à l'aide d'un modèle de base de moments", Mathématiques et Imagerie, Journée 'Application à la modélisation et l'imagerie en Cardio-Vasculaire', Lyon, France, 2002.
  54. [ORKI-01d] M. Orkisz, A. Frery, O. Chapet, F. Mornex, and I. E. Magnin, "Attempts to bronchial tumor motion tracking in portal images during conformal radiotherapy treatment", 9th IAPR Conf Computer Analysis of Image Patterns (CAIP'2001), vol. 2124, Warsaw, Poland, Lecture Notes in Comp. Science, Publ., pp. 247-255, 2001 .
  55. [MANS-01c] C. Mansard, M. Hernández Hoyos, M. Orkisz, P. Puech, L. Chaabane, J. M. Serfaty, I. E. Magnin, and P. Douek, "Automatic image segmentation and stenosis quantification applied to MRA and to high resolution MR image", Proc of XIII int Workshop on MRA, Madison, WI, USA, 2001.
  56. [MANS-01b] C. Mansard, M. Hernández Hoyos, M. Orkisz, P. Puech, L. Chaabane, J. M. Serfaty, I. E. Magnin, and P. Douek, "Automatic image segmentation and stenosis quantification applied to MRA and to High Resolution MR Images", 2nd Int Workshop on Coronary MR and CT angiography, Chicago, USA, October 1-2, 2001.
  57. [MANS-01d] C. Mansard, A. Anwander, L. Chaabane, M. Orkisz, B. Neyran, P. Douek, and I. E. Magnin, "Dynamic active contour model for size independent blood vessel lumen segmentation and quantification in high-resolution magnetic resonance image", 9th Int IAPR conf Computer Analysis of Image and Patterns (CAIP'2001), vol. 2124, Warsaw, Poland, pp. 264–273, 2001 .
  58. [HERN-01] M. Hernández Hoyos, M. Orkisz, C. Mansard, A. Anwander, B. Neyran, J. P. Roux, E. Boix, I. E. Magnin, and P. Douek, "MARACAS (MAgnetic Resonance Angiography Computer ASsisted Analysis) : an interactive software for visualisation and analysis of blood vessels in 3D MRA providing automatic quantification of arterial stenosis", XII Int. Workshop on MRA, vol. 12, Lyon, France, pp. 47, 2001.
  59. [ORKI-01c] M. Orkisz, and M. Hernández Hoyos, "Models for 3D Vascular Image Analysis", Computer Graphics, Image Processing and Recognition, Warsaw, Poland, 2001.
  60. [MANS-01a] C. Mansard, A. Anwander, L. Chaabane, M. Orkisz, B. Neyran, P. Douek, and I. E. Magnin, "Size independent active contour model for blood vessel lumen quantification applied to MRA and to high resolution magnetic resonance image", MICCAI'01, Utrecht, The Nederlands, October 14-17, 2001 .
  61. [MARC-01b] B. Marchand, P. Douek, P. Robert, C. Corot, J. P. Roux, P. Adeleine, M. Hernández Hoyos, Y. Crémillieux, M. Orkisz, and E. Canet, "Value of MRA sequences and contrast agents for the evaluation of high-degree stenosis : a phantom study", International Society of Magnetic Resonance in Medicine Scientific Meeting, Glasgow, UK, 2001.
  62. [HERN-00c] M. Hernández Hoyos, A. Anwander, M. Orkisz, J. P. Roux, P. Douek, and I. E. Magnin, "A deformable vessel model with single point initialization for segmentation, quantification and visualization of blood vessels in 3D MRA", MICCAI, vol. 13, no. 9, Pittsburgh, USA, pp. 735-745, 2000.
  63. [HERN-00a] M. Hernández Hoyos, M. Orkisz, J. P. Roux, I. E. Magnin, and P. Douek, "MAgnetic Resonance Angiography Computer ASisted analysis : an interactive software for visualization and analysis of blood vessels 3D MRA automatic quantification of the arterial stenosis", RSNA 86th Annual Meeting, Chicago, Illinois, USA, pp. 700-24, 2000.
  64. [HERN-00b] M. Hernández Hoyos, M. Orkisz, J. P. Roux, I. E. Magnin, and P. Douek, "MAgnetic Resonance Angiography Computer ASisted analysis: logiciel de visualisation et de traitement d'image ARM 3D", Journées Françaises de Radiologie, vol. 81, no. 10, Paris, France, pp. 1524, 2000.
  65. [HERN-99] M. Hernández Hoyos, M. Orkisz, J. P. Roux, and P. Douek, "Inertia-based vessel axis extraction and stenosis quantification in 3D MRA images", Computer Assisted Radiology and Surgery (CARS'99), Paris, France, pp. 189-193, 1999.
  66. [ORKI-98a] M. Orkisz, T. Farchtchian, M. Bourlion, G. Gimenez, H. Redarce, T. Flam, D. Saighi, and B. Debré, "Application du traitement d'images au suivi temps réel de calculs urinaires en lithotritie extra-corporelle", Forum Jeunes Chercheurs GBM, Brest, France, 1998.
  67. [FLAM-98b] T. Flam, M. Orkisz, T. Farchtchian, M. Bourlion, D. Saighi, G. Gimenez, and B. Debré, "Image-based renal stone tracking to improve efficacy of extracorporeal shock wave lithotripsy", European Urology, 33 : S1, XIIIth Congress of the European Association of Urology, Barcelona, Spain, pp. 113, 22-25 mars, 1998.
  68. [FLAM-98a] T. Flam, M. Orkisz, T. Farchtchian, M. Bourlion, D. Saighi, G. Gimenez, and B. Debré, "Image-based renal stone tracking to Improve efficacy of extracorporeal shock wave lithotripsy", American Urological Association 93rd Annual Meeting, vol. 5, no. 159, San Diego, USA, pp. 127, 30 mai - 4 juin, 1998.
  69. [ORKI-97b] M. Orkisz, S. Mosnier, J. P. Roux, G. Gonnot, R. Brion, and I. E. Magnin, "Automated heart-wall instantaneous velocity estimation from M-mode echography images", World Congress on Medical Physics and Biomedical Engineering, vol. 35, no. 2, Nice, France, pp. 682, 1997.
  70. [FLAM-97] T. Flam, D. Saighi, M. Bourlion, M. Orkisz, T. Farchtchian, P. F. Gerbaud, M. Charif Chefchaouni, N. Thouin, and B. Debré, "Suivi automatique des calculs par reconnaissance d'image en temps réel, en cours de lithotritie extra-corporelle : principes et avantages du sytème Echotrack", Congrès Français d'Urologie, Paris, France, pp. 6A, 1997.
  71. [ORKI-96b] M. Orkisz, P. Douek, I. E. Magnin, and O. Champin, "Anisotropic Non-Linear Filtering for Image Improvement in MR Angiography", 10th Int Conf on Computer Assisted Radiology CAR'96, Paris, France, pp. 260–265, 1996.
  72. [KOCH-96] E. Kochian, M. Orkisz, G. Gimenez, and M. Bourlion, "Application d'un algorithme de mise en correspondance au suivi temps réel de lithiases", AGI, Tours, France, pp. 329–332, 1996.
  73. [CHAM-96a] O. Champin, P. Douek, M. Orkisz, C. Bresson, and I. E. Magnin, "Intérêt d'un filtre non linéaire anisotropique dans l'amélioration des images angiographiques par résonance magnétique (ARM)", Journées Françaises de Radiologie, Paris, France, pp. 776–777, 1996.
  74. [BRES-96] C. Bresson, M. Orkisz, O. Champin, P. Douek, and I. E. Magnin, "Traitement d'images angiographiques IRM", Carrefour de la Fondation Rhône-Alpes Futur, (résumé 2 pages), Lyon, France, 1996.
  75. [ORKI-96a] M. Orkisz, P. Douek, C. Bresson, and I. E. Magnin, "Vessel Visibility Improvement in MR Angiography by Anisotropic Non-Linear Filtering", International Society of Magnetic Resonance in Medicine Scientific Meeting, New York, USA, pp. 1649, 1996.
  76. [CHAM-96b] O. Champin, M. Orkisz, I. E. Magnin, and P. Douek, "Vessel visibility improvement in MR angiography by using anisotropic non-linear filtering", Radiol Soc North Am Meeting, (résumé), Chicago, USA, pp. 530, 1996.
  77. [ORKI-95a] M. Orkisz, "Prise en compte des discontinuités dans l'estimation du mouvement : une revue", Journée d'études : le mouvement dans les images et les signaux, SEE Club 29 et CNRS GDR 134, Paris, France, 1995.
  78. [LIU-95b] W. Y. Liu, M. Orkisz, I. E. Magnin, and R. Brion, "Spatial Discontinuity Detection and Temporal Smoothing for Heart-Wall Motion Estimation from TM-mode Echocardiographic Images", Computers in Cardiology, Vienna, Austria, pp. 561–564, 1995 .
  79. [BASS-94a] A. Basset, M. Orkisz, I. E. Magnin, and R. Brion, "Dense motion field estimation involving discontinuities applied to echocardiographic image sequences", IEEE International Ultrasonics Symposium, Cannes, France, pp. 1573–1576, 1994.
  80. [ORKI-93] M. Orkisz, and D. Pellerin, "Estimation du mouvement par approche mixte : droites de contrainte/mise en correspondance", 14e Colloque sur le Traitement du Signal et des Images GRETSI, Juan-les-Pins, France, pp. 855–858, 1993.
Thesis
  1. [ZAHND-12d] G. Zahnd, Estimation du mouvement bi-dimensionnel de la paroi artérielle en imagerie ultrasonore par une approche conjointe de segmentation et de speckle tracking, : INSA de Lyon, 2012.  Téléchargement: PhD_Guillaume_Zahnd.pdf (14.38 Mo)
  2. [ZULU-11d] M. A. Zuluaga, Methods for the automation of vascular lesions detection in computed tomography images, , Lyon, Université Claude Bernard Lyon 1, January 2011.
Database
  1. [MOSN-02] S. Mosnier, M. Orkisz, I. E. Magnin, and R. Brion, Echocardiographic image sequence data base, , 2002.
Miscellaneous
  1. [ORKI-02e] M. Orkisz, and M. Hernández Hoyos, Suivi de vaisseaux sanguins dans des images 3D à l'aide d'un modèle de base de moments, , 2002.
  2. [BRES-96b] C. Bresson, M. Orkisz, O. Champin, P. Douek, and I. E. Magnin, Traitement d'images angiographiques IRM, , 1996.
  3. [ORKI-95b] M. Orkisz, R. Brion, and G. Gonnot, Echocardiographic Image Sequence Data Base : Left Ventricle in Short Axis View, , 1995.
  4. [ORKI-95d] M. Orkisz, A. Basset-Merle, and I. E. Magnin, Motion Estimation from B-mode Echocardiographic Images, , 1995.
  5. [LIU-95c] W. Y. Liu, M. Orkisz, and I. E. Magnin, Motion Estimation from M-mode Echocardiographic Images, , 1995.
  6. [ORKI-95c] M. Orkisz, Prise en compte des discontinuités dans l'estimation du mouvement : une revue, , 1995.
HDR
  1. [ORKI-03] M. Orkisz, Segmentation de formes linéiques et suivi d'objets déformables dans des images médicales 2D et 3D, : INSA Lyon, 2003.

    Coquerez J.P. (rap.), Jolion J.M. (rap.), Magnin I.E., Preteux F. (rap.) et Revel D.

Invited Conference
  1. [COUR-12] G. Courbebaisse, J. Latt, O. Malaspinas, M. Orkisz, and B. Chopard, "Blood flow simulation within Stented Intracranial Aneurysm", ICFD, Sendai, Japan, 09/2012.
  2. [ORKI-09a] M. Orkisz, "Medical imaging in CREATIS-LRMN", Inauguration de COLIVRI, Universidad de los Andes, Bogota, Colombia, 2009.
  3. [ORKI-02b] M. Orkisz, and M. Hernández Hoyos, "From inertia matrix to the analysis of vascular pathologies", Int Conf Computer Vision and Graphics, Zakopane, Poland, pp. 6-15, 2002.
  4. [ORKI-01b] M. Orkisz, and M. Hernández Hoyos, "Models for 3D vascular image analysis", Med. Informatics and Technologies, vol. 2, no. 1, Jaszowiec, Poland, pp. IP13-IP22, 2001.
  5. [ORKI-01f] M. Orkisz, and M. Hernández Hoyos, "Models for 3D Vascular Image Analysis", Computer Graphics, Image Processing and Recognition, Warsaw, Poland, 2001.
  6. [ORKI-00b] M. Orkisz, M. Hernández Hoyos, I. E. Magnin, and P. Douek, "Advances in image processing techniques applied to 3D MRA images enhancement, segmentation and quantification - A survey and contributions", XII Int. Workshop on MRA, vol. 12, Lyon, France, pp. 44, 2000.
  7. [ORKI-99b] M. Orkisz, M. Hernández Hoyos, and P. Douek, "Automatic vessel axis extraction and equivalent diameter estimation from 3D MRA data", XI Int. Workshop on MRA, vol. 41, no. S422, Lund, Sweden, pp. 63, 1999.
  8. [ORKI-98d] M. Orkisz, and M. Hernández Hoyos, "Développements récents dans le traitement d'images : principes des techniques de segmentation d'images vasculaires 3D", 2-èmes Journées du Groupe de Recherche et de Réflexion en Angiographie par Résonance Magnétique, Paris, France, pp. 94-103, 1998.