General

[ TMI 2013 ] T. Glatard, C. Lartizien, B. Gibaud, R. Ferreira da Silva, G. Forestier, F. Cervenansky, M. Alessandrini, H. Benoit-Cattin, O. Bernard, S. Camarasu-Pop, N. Cerezo, P. Clarysse, A. Gaignard, P. Hugonnard, H. Liebgott, S. Marache, A. Marion, J. Montagnat, J. Tabary, and D. Friboulet, A Virtual Imaging Platform for multi-modality medical image simulation, IEEE Transactions on Medical Imaging, vol. 32, no. 1, pp. 110-118, 2013
[ ISBI 2012-1 ] T. Glatard, A. Marion, H. Benoit-Cattin, S. Camarasu-Pop, P. Clarysse, R. Ferreira da Silva, G. Forestier, B. Gibaud, C. Lartizien, H. Liebgott, K. Moulin, and D. Friboulet Multi-modality image simulation with the virtual imaging platform: Illustration on cardiac MRI and echography, IEEE International Symposium on Biomedical Imaging (ISBI), Barcelona, Spain, pp 98-101, 2012

Semantic modeling and tools

[ JGC 2013 ] (under review) N. Cerezo, J. Montagnat, M. Blay-Fornarino. Computer-assisted Scientific Workflow Design, submitted to Journal of Grid Computing (special issue on workflows, 2013).
[ HISB 2012 ] B. Gibaud, G. Forestier, H. Benoit-Cattin, F. Cervenansky, P. Clarysse, D. Friboulet, A. Gaignard, P. Hugonnard, C. Lartizien, H. Liebgott, J. Montagnat, J. Tabary, and T. Glatard, OntoVIP: an ontology for the annotation of object models used for medical image simulation, IEEE International Conference on Healthcare Informatics, Imaging and Systems Biology (HISB), La Jolla, California, USA, pp. 110-119, 2012.
[ DCICTIA-MICCAI 2012 ] A. Gaignard, J. Montagnat, C. Faron-Zucker, O. Corby, Semantic Federation of Distributed Neurodata. MICCAI Workshop on Data- and Compute-Intensive Clinical and Translational Imaging Applications (DCICTIA-MICCAI 2012), pp 41-50, Nice, France, Oct. 2012.
[ WORKS 2011 ] N. Cerezo, J. Montagnat, Scientific Workflows Reuse through Conceptual Workflows, 6th Workshop on Workflows in Support of Large-Scale Science (WORKS), associated to SuperComputing, Seattle (USA), November 2011.
[ IEEE CBMS 2011 ] G. Forestier, A. Marion, H. Benoit-Cattin, P. Clarysse, D. Friboulet, T. Glatard, P. Hugonnard, C. Lartizien, H. Liebgott, J. Tabary, B. Gibaud, Sharing object models for multi-modality medical image simulation: a semantic approach, Computer-Based Medical Systems (CBMS), 2011 24th International Symposium on pp.1-6, 27-30 June 2011
[ KEOD 2011 ] A. Gaignard, J. Montagnat, B. Wali, B. Gibaud. Characterizing semantic service parameters with Role concepts to infer domain-specific knowledge at runtime. International Conference on Knowledge Engineering and Ontology Development (KEOD'11), Paris, France, Oct. 2011.

Computing and storage

[ FGCS 2013 ] R. Ferreira da Silva, T. Glatard, and F. Desprez, "Self-healing of workflow activity incidents on distributed computing infrastructures", Future Generation Computer Systems, to appear, 2013.
[ CoreGrid 2012 ] R. Ferreira da Silva, T. Glatard, A science-gateway workload archive to study pilot jobs, user activity, bag of tasks, task sub-steps, and workflow executions, CoreGRID/ERCIM Workshop on Grids, Clouds and P2P Computing - CGWS 2012, Rhodes Island, Greece, Springer Berlin Heidelberg, pp. 79-88.
[ CCGrid 2012 ] R. Ferreira da Silva, T. Glatard, and F. Desprez, Self-healing of operational workflow incidents on distributed computing infrastructures, 12th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing - CCGrid 2012, Ottawa, Canada, pp. 318-325.
[ IEEE CBMS 2011a ], A. Marion, G. Forestier, H. Liebgott, C. Lartizien, H. Benoit-Cattin, S. Camarasu-Pop, T. Glatard, R. Ferreira da Silva, P. Clarysse, S. Valette, B. Gibaud, P. Hugonnard, J. Tabary, D. Friboulet, Multi-modality image simulation of biological models within VIP, Computer-Based Medical Systems (CBMS), 2011 24th International Symposium on , pp.1-6, 27-30 June 2011.
[ HealthGrid 2011 ], Multi-platform workflow execution for medical simulation, Rafael Ferreira da Silva, Sorina Camarasu-Pop, Baptiste Grenier, Vanessa Hamar, David Manset, Johan Montagnat, Jérôme Revillard, Javier Rojas Balderrama, Andrei Tsaregorodtsev, Tristan Glatard, proceedings of the 9th HealthGrid conference, 2011.
[ IEEE ICWS 2011 ], J. Rojas Balderrama, J. Montagnat, D. Lingrand, jGASW: A Service-Oriented Framework Supporting High Throughput Computing and Non-functional Concerns, Proceedings of the IEEE International Conference on Web Services, pp. 691-694, 2010.

Applications

[ SPIE 2013 ] Alessandro Crimi, Olivier Commowick, Jean-Christoph Ferre, Adil Maarouf, Gilles Edan, Christian Barillot, "Classification of Multiple sclerosis lesions evolution in patients with clinically isolated syndrome ." Alessandro Crimi, Olivier Commowick, Jean-Christoph Ferre, Adil Maarouf, Gilles Edan, Christian Barillot. In Proceedings of the SPIE: Medical Imaging 2013, Orlando, Florida, USA, 2013.
[ ISBI 2013 ] Alessandro Crimi, Olivier Commowick, Jean-Christoph Ferre, Adil Maarouf, Gilles Edan, Christian Barillot, "Semi automatic classification of Multiple sclerosis lesion pattern in patients with clinically isolated syndrome." International symposium on biomedical imaging, San-Francisco, California, USA, 2013
[ Acoustics 2012 ] G. Xinxin, D. Friboulet, H. Liebgott, "Back-progagation based beamformer design for transverse oscillations in echocardiography", Proc. Acoustics 2012, Nantes, France, Avril 2012
[ ISBI 2012 ] G. Xinxin, D. Friboulet, H. Liebgott, Transverse oscillations beamformer design for sector scan using back-propagation, Proc. IEEE International Symposium on Biomedical Imaging (ISBI), Barcelona, Spain, May 2012
[ MBIA 2012 ] Fang Cao, Olivier Commowick, Elise Bannier, Jean-Christophe Ferré, Gilles Edan, Christian Barillot, P .-T. Yap et al., MRI Estimation of T1 Relaxation Time Using a Constrained Optimization Algorithm MBIA 2012, Oct 2012, Nice, France. pp. 203-214

vip@creatis.insa-lyon.fr
VIP was funded by ANR under grant ANR-09-COSI-03.