Structural and kinematic analysis of the arterial wall in ultrasound image sequences using deep learning
Recrutement: 
Recrutement en cours/passé: 
Recrutement passé
Periode: 
2020-2023
Contact: 
M. Maciej ORKISZ <maciej.orkisz[at]creatis.insa-lyon.fr> and M. Emmanuel ROUX <emmanuel.roux[at]creatis.insa-lyon.fr>

Title of the PhD project:      Structural and kinematic analysis of the arterial wall in ultrasound image sequences using deep learning

University:                              Université Claude Bernard Lyon 1, France

Doctoral school:                     ED 160 EEA de Lyon, head Gérard SCORLETTI

Discipline:                              image processing

Laboratory:                            CREATIS CNRS 5220, INSERM U1206 (head O. Beuf)

Supervisor:                             M. Maciej ORKISZ, team MOTIVATE

Co-supervisor:                       M. Emmanuel ROUX, team Images and Models

 

 

Scientific field and context:  Ultrasound (US) imaging is well suited for cardiovascular disease screening. In particular, it allows the observation of thickening and pathological changes in the distensibility of the arterial wall. Recently, it has been shown that longitudinal wall motion and variations in wall thickness during the heart beat provide additional information on the biomechanical state of the wall, which may improve early detection of at-risk individuals. These phenomena are much more difficult to quantify and the validation of methods published to date is subject to uncertainties related to the use of manual tracings as a reference.

Objectives of the thesis: The main goal of the thesis is to develop segmentation and motion estimation methods capable of delineating the arterial wall and finding all the components of its displacement, throughout sequences of US images representing an artery, typically a carotid artery. To do so, the candidate will also develop simulation methods to generate realistic US-image sequences incorporating all the movements of interest, with the dual objective of training the models and creating perfectly controlled references to validate the proposed segmentation and motion estimation methods.

Expected innovative contributions: The main contribution will be a deep-learning-based motion estimation method capable of finding not only global displacements, but also local tissue deformations. In order to do this, a model will be developed relating the tissue motion to the changes in visual appearance of the characteristic US-image texture, called speckle. Another contribution will be a simulation method for generating very realistic sequences with perfectly controlled deformations, both to train the model and to create the ground truth necessary to validate the estimation method.

PhD thesis funding: Doctoral contract (3 years) at UCBL (University of Lyon).

Expected candidate profile (prerequisite): image processing, machine learning, programming, interest for biomedical field and biomechanical modeling for health sector.

Application: Before the 15th of April 2020, send to the supervisors your resume and contacts of two references, preferably including your MSc project supervisor.