Publications

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Book Chapter
[ORKI-02d]M. Orkisz and Hernández Hoyos, M., Développement récent dans le traitement d'images : principes des techniques de segmentation, in Angiographie par Résonance Magnétique, P. Douek, Laissy, J. P., Levy, C., and Trillaud, H. Masson, Publ., 2002, pp. 62–73.
[DOUE-05x]P. Douek, Hernández Hoyos, M., and Orkisz, M., Image Processing in Contrast-Enhanced MR Angiography, in Magnetic Resonance Angiography, G. Schneider, Prince, M. R., Meaney, J. F. M., and Ho, V. B. Milan, Italy: Springer, 2005, pp. 55-64.
[ORKI-04]M. Orkisz and Hernández Hoyos, M., Podstawy technik segmentacji stosowanych w przetwarzaniu obrazow 3D naczyn krwionosnych, in Polska Akademia Nauk Biocybernetyka i Inzynieria Biomedyczna 2000, Obrazowanie biomedyczne, vol. 8, M. Nalecz, Chmielewski, L., Kulikowski, J. M., and Nowakowski, A. Warszawa, Poland: Akademicka Oficyna Wydawnicza EXIT, Publ., 2004, pp. 351–372.
[FLOR-17a]Right generalized cylinder model for vascular segmentation, in Computing and Visualization for Intravascular Imaging and Computer-Assisted Stenting, 1st ed., Elsevier, 2017, pp. 131-156.
Conference Paper
[FLOR-02]L. Flórez-Valencia, Montagnat, J., and Orkisz, M., 3D graphical models for vascular-stent pose simulation, in Int Conf Comput Vision Graphics, Zakopane, Poland, 2002, pp. 259-266.
[ZULU-09c]M. A. Zuluaga, Orkisz, M., Delgado Leyton, E. J. F., Doré, V., Morales Pinzón, A., and Hernández Hoyos, M., Adaptación del algoritmo MARACAS para la segmentación de la bifurcación de la arteria carótida y cuantificación de estenosis en imágenes TAC, in Quinto Seminario de Ingeniería Biomédica y Quinto Seminario Internacional de Procesamiento de y Análisis de Imágenes Médicas, Bogota, Colombia, 2009, p. 5 in electronic proc.
[ZULU-09b]M. A. Zuluaga, Orkisz, M., Delgado Leyton, E. J. F., Doré, V., Morales Pinzón, A., and Hernández Hoyos, M., Adaptations of MARACAS algorithm to the segmentation of the carotid bifurcation and stenosis quantification in CTA images, in MICCAI Workshop - 3D Segmentation in the Clinic: A Grand Challenge III, London, GB, 2009, p. 7 on-line.
[GOME-16]Airway segmentation, skeletonization, and tree matching to improve registration of 3D CT images with large opacities in the lungs, in International Conference on Computer Vision and Graphics, Warsaw, Poland, 2016, pp. 395-407.
[LIDA-17]Airway-tree segmentation in subjects with acute respiratory distress syndrome, in Scandinavian Conference on Image Analysis, Tromsø, Norway, 2017, pp. 76-87.
[FLOR-10b]L. Flórez-Valencia, Azencot, J., and Orkisz, M., Algorithm for blood-vessel segmentation in 3D images based on a right generalized cylinder model: application to carotid arteries, in Int Conf Comput Vision Graphics, Warsaw, Poland, 2010, vol. LNCS 6374, pp. 27-34.
[ORKI-96b]M. Orkisz, Douek, P., Magnin, I. E., and Champin, O., Anisotropic Non-Linear Filtering for Image Improvement in MR Angiography, in 10th Int Conf on Computer Assisted Radiology CAR'96, Paris, France, 1996, pp. 260–265.
[ORKI-98a]M. Orkisz, Farchtchian, T., Bourlion, M., Gimenez, G., Redarce, H., Flam, T., Saighi, D., and Debré, B., Application du traitement d'images au suivi temps réel de calculs urinaires en lithotritie extra-corporelle, in Forum Jeunes Chercheurs GBM, Brest, France, 1998.
[KOCH-96]E. Kochian, Orkisz, M., Gimenez, G., and Bourlion, M., Application d'un algorithme de mise en correspondance au suivi temps réel de lithiases, in AGI, Tours, France, 1996, pp. 329–332.
[GUTI-12]F. A. Gutiérrez Ossa, Corredor Jerez, R. A., Zuluaga, M. A., Orkisz, M., and Hernández Hoyos, M., Aprendizaje de máquinas basado en árboles aleatorios para la segmentación automática de la arteria carótida en imágenes de TAC, in Seminario de Ingeniería Biomédica – SIB, Bogotá, Colombia, 2012, pp. 14-15.
[COUR-15]E. - J. Courtial, Orkisz, M., Douek, P., and Fulchiron, R., Assessment of the hyper-viscoelastic behavior of aorta phantoms from ultrasound images, in 10th Annual European Rheology Conference, Nantes, France, 2015.
[RICH-13e]J. C. Richard, Pouzot, C., Morales Pinzón, A., Torres González, J. S., Ortega, D. C., Orkisz, M., Neyran, B., Lavenne, F., and Guérin, C., Assessment of trending ability of the nitrogen washout-washin technique to detect change in end-expiratory lung volume, in European Society of Intensive Care Medicine, Paris, 2013, Intensive Care Medicine., vol. 39, no. Suppl 2, p. S495.
[ORKI-01d]M. Orkisz, Frery, A., Chapet, O., Mornex, F., and Magnin, I. E., Attempts to bronchial tumor motion tracking in portal images during conformal radiotherapy treatment, in 9th IAPR Conf Computer Analysis of Image Patterns (CAIP'2001), Warsaw, Poland, 2001, vol. 2124, pp. 247-255.
[HERN-02c]M. Hernández Hoyos, Orkisz, M., Magnin, I. E., and Douek, P., Automated generation of vessel centerlines and volumetric assessment of stenoses from MRA images, in XIII Int. Workshop on MRA, Essen, Germany, 2002, vol. Abstr, p. 140.
[ORKI-97b]M. Orkisz, Mosnier, S., Roux, J. P., Gonnot, G., Brion, R., and Magnin, I. E., Automated heart-wall instantaneous velocity estimation from M-mode echography images, in World Congress on Medical Physics and Biomedical Engineering, Nice, France, 1997, vol. 35, p. 682.
[MANS-01b]C. Mansard, Hernández Hoyos, M., Orkisz, M., Puech, P., Chaabane, L., Serfaty, J. M., Magnin, I. E., and Douek, P., Automatic image segmentation and stenosis quantification applied to MRA and to High Resolution MR Images, in 2nd Int Workshop on Coronary MR and CT angiography, Chicago, USA, 2001.
[MANS-01c]C. Mansard, Hernández Hoyos, M., Orkisz, M., Puech, P., Chaabane, L., Serfaty, J. M., Magnin, I. E., and Douek, P., Automatic image segmentation and stenosis quantification applied to MRA and to high resolution MR image, in Proc of XIII int Workshop on MRA, Madison, WI, USA, 2001.
[GUTI-11]F. A. Gutiérrez Ossa, Ortega, D. C., Orkisz, M., Uriza, L. F., and Hernández Hoyos, M., Automatic segmentation of pulmonary arterial tree in Computed Tomography images, in Sexto Congreso Colombiano de Computación (6CCC), Manizales, Colombia, 2011, p. 6 in electronic proc.
[CARR-06a]J. F. Carrillo, Hernández Hoyos, M., and Orkisz, M., Automatic vascular tree segmentation, in XXXII Conferencia Latinoamericana de Informática CLEI, Santiago de Chile, Chile, 2006, p. 174 (abstract; 8 p. full paper on CD).
[ZULU-10c]M. A. Zuluaga, Delgado Leyton, E. J. F., Hernández Hoyos, M., and Orkisz, M., Can the coronary artery centerline extraction in computed tomography images be improved by use of a partial volume model?, in Int Conf Comput Vision Graphics, Warsaw, Poland, 2010, vol. LNCS 6375, pp. 385-392.
[FLOR-10c]L. Flórez-Valencia, Azencot, J., and Orkisz, M., Carotid arteries segmentation in CT images with use of a right generalized cylinder model, in Quinto Congreso Colombiano de Computación (5CCC), Cartagena de Indias, Colombia, 2010, p. 6 in electronic proc.
[FLOR-09]L. Flórez-Valencia, Azencot, J., and Orkisz, M., Carotid arteries segmentation in CT images with use of a right generalized cylinder model, in MICCAI Workshop - 3D Segmentation in the Clinic: A Grand Challenge III, London, GB, 2009, p. 8 on-line.
[FLOR-12b]L. Flórez-Valencia, Orkisz, M., Corredor Jerez, R. A., Torres González, J. S., Correa Agudelo, E. M., Mouton, C., and Hernández Hoyos, M., Coronary artery segmentation and stenosis quantication in CT images with use of a right generalized cylinder model, in MICCAI Workshop 3D Cardiovascular Imaging Segmentation Challenge, Nice, France, 2012, p. 8 in electronic proc.
[HERN-08]M. Hernández Hoyos, Zuluaga, M. A., Lozano, M., Prieto, J. C., Douek, P., Magnin, I. E., and Orkisz, M., Coronary centerline tracking in CT images with use of an elastic model and image moments, in MICCAI Workshop - Grand Challenge Coronary Artery Tracking, New York City, USA, 2008, p. 8 on-line: http://hdl.handle.net/10380/1401.
[PRIE-12c]J. C. Prieto, Revol-Muller, C., Odet, C., Orkisz, M., and Hernández Hoyos, M., CreaLungs: a variational region growing method to segment pulmonary vascular trees, in ISBI VESSEL12 Challenge, Barcelona, Spain, 2012.
[MOUT-13]C. Mouton, Dávila Serrano, E. E., Cervenansky, F., Camarasu-Pop, S., Correa, E., Flórez-Valencia, L., Hernández Hoyos, M., and Orkisz, M., CreaTools: A development framework for medical image processing software ; an application to segmentation, anomaly detection and quantification for coronary arteries, in European BioImage Analysis Symposium 2013, IRB Barcelona, Spain, 2013.PDF icon 2013_10_Barcelona_Abstract.pdf (42.41 KB)
[DAVI-12b]E. E. Dávila Serrano, Guigues, L., Cervenansky, F., Camarasu-Pop, S., Riveros Reyes, J. G., Flórez-Valencia, L., Hernández Hoyos, M., and Orkisz, M., CreaTools: a framework to develop medical image processing software. Application to simulate pipeline stent deployment in intracranial vessels with aneurysms, in Int. Conf. Comput. Vision. Graphics., Warsaw, Poland, 2012, vol. LNCS 7594, pp. 55-62.
[DAVI-12a]E. E. Dávila Serrano, Guigues, L., Roux, J. P., Cervenansky, F., Camarasu-Pop, S., Flórez-Valencia, L., Hernández Hoyos, M., and Orkisz, M., CreaTools: applications and development framework for medical image-processing software, in ISBI Workshop on Open Source Medical Image Analysis Software, Barcelona, Spain, 2012.
[DAVI-12c]E. E. Dávila Serrano, Guigues, L., Roux, J. P., Cervenansky, F., Mouton, C., Camarasu-Pop, S., Flórez-Valencia, L., Hernández Hoyos, M., and Orkisz, M., CreaTools: applications and development framework for medical image-processing software, in Libre Software Meeting, Geneva, 2012.
[HERN-12a]M. Hernández Hoyos, Dávila Serrano, E. E., Correa Agudelo, E. M., Torres González, J. S., Corredor Jerez, R. A., Gutiérrez Ossa, F. A., Flórez-Valencia, L., Mouton, C., and Orkisz, M., CreaTools: una plataforma para desarrollo de software de procesamiento de imágenes médicas. Aplicación a la segmentación de arterias coronarias y a la detección automática de lesiones en imágenes de angioTAC, in Congreso Colombiano de Radiología, Cartagena de Indias, Colombie, 2012.
[HERN-00c]M. Hernández Hoyos, Anwander, A., Orkisz, M., Roux, J. P., Douek, P., and Magnin, I. E., A deformable vessel model with single point initialization for segmentation, quantification and visualization of blood vessels in 3D MRA, in MICCAI, Pittsburgh, USA, 2000, vol. 13, pp. 735-745.
[BASS-94a]A. Basset, Orkisz, M., Magnin, I. E., and Brion, R., Dense motion field estimation involving discontinuities applied to echocardiographic image sequences, in IEEE International Ultrasonics Symposium, Cannes, France, 1994, pp. 1573–1576.
[COUR-14b]E. - J. Courtial, Orkisz, M., Douek, P. C., and Fulchiron, R., Development and validation of realistic aortic phantom tailored for each patient, in Artery, Maastricht, the Netherlands, 2014, p. P11.3.
[COUR-14a]E. - J. Courtial, Orkisz, M., Fanton, L., Douek, P., and Fulchiron, R., Development and validation of realistic aortic phantoms tailored for each patient, in IEEE EMBC, Chicago, 2014.
[COUR-13]E. - J. Courtial, Douek, P., Orkisz, M., and Fulchiron, R., Développement et validation de fantômes d’aorte aux propriétés mécaniques contrôlées, in Journées d'Etudes des POlymères, Aussois, France, 2013.
[MANS-01d]C. Mansard, Anwander, A., Chaabane, L., Orkisz, M., Neyran, B., Douek, P., and Magnin, I. E., Dynamic active contour model for size independent blood vessel lumen segmentation and quantification in high-resolution magnetic resonance image, in 9th Int IAPR conf Computer Analysis of Image and Patterns (CAIP'2001), Warsaw, Poland, 2001, vol. 2124, pp. 264–273.
[RICH-13a]J. C. Richard, Pouzot, C., Morales Pinzón, A., Torres González, J. S., Ortega, D. C., Orkisz, M., Neyran, B., Lavenne, F., and Guérin, C., Effects of PEEP and tidal volume on the reliability of end-expiratory volume measurement with the nitrogen washout/washin technique, in European Society of Intensive Care Medicine, Paris, 2013, Intensive Care Medicine., vol. 39, no. Suppl 2, p. S307.
[QORC-17a]Estimating the periodic compression of the carotid intima-media using ultrasonography: a proof of concept, in Recherche en Imagerie et Technologies pour la Santé (RITS), Lyon, France, 2017.
[ZAHN-11a]G. Zahnd, Orkisz, M., Sérusclat, A., and Vray, D., Estimation de la trajectoire 2D des parois de l'artère carotide, dans des séquences d'images échographiques, par une approche conjointe de segmentation et de suivi de speckle guidé, in GRETSI, Bordeaux, France, 2011, p. 4 pages in CD.
[ORKI-93]M. Orkisz and Pellerin, D., Estimation du mouvement par approche mixte : droites de contrainte/mise en correspondance, in 14e Colloque sur le Traitement du Signal et des Images GRETSI, Juan-les-Pins, France, 1993, pp. 855–858.
[ARDI-08]N. Ardila, Hernández Hoyos, M., Teillaud, S., Orkisz, M., Dávila Serrano, E. E., Beuf, O., Adrien, J., Martinez, F., Rey, C., and Sanchez, J. A., Estudio no destructivo de los canales internos de octocorales por medio del análisis de imágenes biológicas y médicas, in XII Seminario Nacional de Ciencia y Tecnología del Mar, Santa Marta, Colombia, 2008, vol. 1, p. 155.
[ZULU-09d]M. A. Zuluaga, Hernández Hoyos, M., and Orkisz, M., Evaluación del efecto de volumen parcial en imágenes TAC para el mejoramiento de la segmentación arterial coronaria, in Quinto Seminario de Ingeniería Biomédica y Quinto Seminario Internacional de Procesamiento de y Análisis de Imágenes Médicas, Bogota, Colombia, 2009, p. 4 in electronic proc.
[ZULU-09a]M. A. Zuluaga, Hernández Hoyos, M., and Orkisz, M., Evaluation of partial volume effects in computer tomography for the improvement of coronary artery segmentation, in 23rd CARS - Comput Assisted Radiol Surg, Berlin, Germany, 2009, vol. 4-suppl.1, pp. S40-1 (abstract).
[MORA-10]A. Morales Pinzón, Orkisz, M., Teillaud, S., Sánchez, J. A., and Hernández Hoyos, M., Extracción semi-automática de ejes de canales de corales, in Sexto Seminario Internacional de Procesamiento de y Análisis de Imágenes Médicas, Bogotá, Colombia, 2010, p. 10 pages in electronic proceedings.
[CARR-05]J. F. Carrillo, Orkisz, M., and Hernández Hoyos, M., Extraction of 3D vascular tree skeletons based on the analysis of connected components evolution, in 11th Int. IAPR Conf. Computer Analysis of Images and Patterns (CAIP 2005), Versailles, France, 2005, vol. 3691, pp. 604-611.
[QORC-17b]Extraction of characteristic patterns from carotid longitudinal kinetics, in Recherche en Imagerie et Technologies pour la Santé (RITS), Lyon, France, 2017.
[FLOR-04a]L. Flórez-Valencia, Vincent, F., and Orkisz, M., Fast 3D pre-segmentation of arteries in computed tomography angiograms, in Int Conf Comput Vision Graphics, Warsaw, Poland, 2004, Computational Imaging and Vision., vol. 32, pp. 361-366.
[ZULU-12]M. A. Zuluaga, Hernández Hoyos, M., Dávila, J. C., Uriza Carrasco, L. F., and Orkisz, M., A fast lesion registration to assist coronary heart disease diagnosis in CTA images, in Int. Conf. Comput. Vision Graph., Warsaw, Poland, 2012, vol. LNCS 7594, pp. 710-717.
[BALT-07]M. Baltaxe Milwer, Flórez-Valencia, L., Hernández Hoyos, M., Magnin, I. E., and Orkisz, M., Fast marching contours for the segmentation of vessel lumen in CTA cross-sections, in Conf Proc IEEE Eng Med Biol Soc, Lyon, France, 2007, pp. 791-794.
[FLOR-07a]L. Flórez-Valencia, Baltaxe Milwer, M., Hernández Hoyos, M., Vincent, F., Douek, P., Magnin, I. E., and Orkisz, M., Fast marching level-sets for the extraction of vascular cross-sectional contours in CT angiography images, in 21st CARS - Comput Assist Radiol Surg, Berlin, Germany, 2007, vol. 2-suppl.1, pp. S449-S450 (abstract).
[ZULU-10e]M. A. Zuluaga, Delgado Leyton, E. J. F., Hernández Hoyos, M., and Orkisz, M., Feature selection for SVM-based vascular anomaly detection, in MICCAI Workshop on Medical Computer Vision, Beijing, China, 2010, vol. LNCS 6533, pp. 141-152.
[CANT-07a]D. Cantor Rivera, Orkisz, M., and Hernández Hoyos, M., Generación de modelos arteriales tridimensionales a partir de imágenes de resonancia magnética (IRM), in XXXIII Conferencia Latinoamericana de Informática (CLEI), San José, Costa Rica, 2007.
[CANT-07b]D. Cantor Rivera, Orkisz, M., Uriza, L. F., and Hernández Hoyos, M., Generación de modelos arteriales tridimensionales a partir de imágenes de resonancia magnética (IRM), in XXXII Congreso Colombiano de Radiología, Cartagena de Indias, Colombia, 2007.
[CANT-07d]D. Cantor Rivera, Orkisz, M., Uriza Carrasco, L. F., and Hernández Hoyos, M., Generación de modelos vasculares específicos al paciente a partir de IRM 3D usando el algoritmo de fast-marching, in Cuarto Seminario de Ingeniería Biomédica y Quinto Seminario Internacional de Procesamiento de y Análisis de Imágenes Médicas, Bogota, Colombia, 2007, p. 2 in electronic proc.
[FLAM-98b]T. Flam, Orkisz, M., Farchtchian, T., Bourlion, M., Saighi, D., Gimenez, G., and Debré, B., Image-based renal stone tracking to improve efficacy of extracorporeal shock wave lithotripsy, in European Urology, 33 : S1, XIIIth Congress of the European Association of Urology, Barcelona, Spain, 1998, p. 113.
[FLAM-98a]T. Flam, Orkisz, M., Farchtchian, T., Bourlion, M., Saighi, D., Gimenez, G., and Debré, B., Image-based renal stone tracking to Improve efficacy of extracorporeal shock wave lithotripsy, in American Urological Association 93rd Annual Meeting, San Diego, USA, 1998, vol. 5, p. 127.
[HERN-99]M. Hernández Hoyos, Orkisz, M., Roux, J. P., and Douek, P., Inertia-based vessel axis extraction and stenosis quantification in 3D MRA images, in Computer Assisted Radiology and Surgery (CARS'99), Paris, France, 1999, pp. 189-193.
[CORR-14a]E. M. Correa Agudelo, Hernández Hoyos, M., Flórez-Valencia, L., and Orkisz, M., An interactive coronary centerline extraction framework for CTA image analysis, in Seminario Internacional de Ingeniería Biomédica, Bogotá, Colombie, 2014.
[CHAM-96a]O. Champin, Douek, P., Orkisz, M., Bresson, C., and Magnin, I. E., Intérêt d'un filtre non linéaire anisotropique dans l'amélioration des images angiographiques par résonance magnétique (ARM), in Journées Françaises de Radiologie, Paris, France, 1996, pp. 776–777.
[ZULU-11b]M. A. Zuluaga, Hush, D., Delgado Leyton, E. J. F., Hernández Hoyos, M., and Orkisz, M., Learning from Only Positive and Unlabeled Data to Detect Lesions in Vascular CT Images, in Medical Image Computing and Computer Assisted Interventions - MICCAI , Toronto, Canada, 2011, vol. LNCS 6893, Part III, pp. 9-16.
[SOLO-16]L. E. Solórzano Vargas, Morales Pinzón, A., Richard, J. C., Orkisz, M., and Hernández Hoyos, M., Localized visualization and quantification of pulmonary parenchyma properties in CT scans in presence of Acute Respiratory Distress Syndrome (ARDS), in Octavo Seminario de Ingeniería Biomédica, Bogotá, Colombia, 2016.
[ZAHN-12b]G. Zahnd, Orkisz, M., Sérusclat, A., and Vray, D., Longitudinal motion of the carotid artery wall and speckle decorrelation issue: accurate estimation using a Kalman-based speckle tracking method, in IEEE Ultrasonics Symposium, Dresden (Germany), 2012, pp. 1366 - 1369.
[MORA-14b]A. Morales Pinzón, Orkisz, M., Richard, J. C., and Hernández Hoyos, M., Lung segmentation in 3D CT images from induced Acute Respiratory Distress Syndrome, in IEEE International Symposium on Biomedical Imaging - ISBI, Beijing, China, 2014.
[MORA-14c]A. Morales Pinzón, Orkisz, M., Richard, J. C., Guérin, C., and Hernández Hoyos, M., Lung segmentation in 3D CT Images of Induced Acute Respiratory Distress Syndrome, in MICCAI NCIGT and NIH Image Guided Therapy Workshop, Boston, USA, 2014, p. 51.
[HERN-00a]M. Hernández Hoyos, Orkisz, M., Roux, J. P., Magnin, I. E., and Douek, P., MAgnetic Resonance Angiography Computer ASisted analysis : an interactive software for visualization and analysis of blood vessels 3D MRA automatic quantification of the arterial stenosis, in RSNA 86th Annual Meeting, Chicago, Illinois, USA, 2000, pp. 700-24.
[HERN-00b]M. Hernández Hoyos, Orkisz, M., Roux, J. P., Magnin, I. E., and Douek, P., MAgnetic Resonance Angiography Computer ASisted analysis: logiciel de visualisation et de traitement d'image ARM 3D, in Journées Françaises de Radiologie, Paris, France, 2000, vol. 81, p. 1524.
[HERN-01]M. Hernández Hoyos, Orkisz, M., Mansard, C., Anwander, A., Neyran, B., Roux, J. P., Boix, E., Magnin, I. E., and Douek, P., MARACAS (MAgnetic Resonance Angiography Computer ASsisted Analysis) : an interactive software for visualisation and analysis of blood vessels in 3D MRA providing automatic quantification of arterial stenosis, in XII Int. Workshop on MRA, Lyon, France, 2001, vol. 12, p. 47.
[ZAHN-11b]G. Zahnd, Orkisz, M., Sérusclat, A., and Vray, D., Minimal-path contours combined with speckle tracking to estimate 2D displacements of the carotid artery wall in B-mode imaging, in IEEE Int. Ultrasonics Symposium, Orlando, Florida, USA, 2011, pp. 732-735.
[ZULU-11c]M. A. Zuluaga, Dong, P., Pacureanu, A., Orkisz, M., and Peyrin, F., Minimum Cost Path Approach for the Segmentation of Bone Canalicular Network from Nano-CT Images, in IEEE Nuclear Science Symposium and Medical Imaging Conference, Valencia, Spain, 2011.
[ORKI-01c]M. Orkisz and Hernández Hoyos, M., Models for 3D Vascular Image Analysis, in Computer Graphics, Image Processing and Recognition, Warsaw, Poland, 2001.
[CORR-14b]E. M. Correa Agudelo, Flórez-Valencia, L., Orkisz, M., Mouton, C., Dávila Serrano, E. E., and Hernández Hoyos, M., A modular workflow architecture for coronary centerline extraction in Computed Tomography Angiography data, in International Conference on Computer Vision and Graphics, Warsaw, Poland, 2014, vol. LNCS 8671, pp. 155-162.
[BENM-09]F. Benmansour, Cohen, L. D., Dávila Serrano, E. E., Douek, P., Orkisz, M., and Zuluaga, M. A., New Interactive Methods for Tubular Structure Segmentation on Medical Images, in 12th ISRACAS - Israeli Symposium on Computer-Aided Surgery, Medical Robotics, and Medical Imaging, Tel-Aviv, Israel, 2009, p. 10 in CD.
[MORA-16b]A. Morales Pinzón, Gómez Betancur, D. A., Solórzano Vargas, L. E., Richard, J. C., Orkisz, M., and Hernández Hoyos, M., A novel hybrid registration method: Application to lung segmentation in CT images of subjects with ARDS, in Octavo Seminario de Ingeniería Biomédica, Bogotá, Colombia, 2016.
[BARG-04]P. Bargiel, Orkisz, M., Przelaskowski, A., Piatkowska-Janko, E., Bogorodzki, P., and Wolak, T., Optimal plane search method in blood flow measurements by magnetic resonance imaging, in Optical Methods, Sensors, Image Processing, and Visualization in Medicine, Gdansk, Poland, 2004, vol. SPIE 5505, pp. 135-138.
[HERN-05a]M. Hernández Hoyos, Orlowski, P., Piatkowska-Janko, E., Bogorodzki, P., and Orkisz, M., Optimisation of acquisition plane selection for blood flow measurement by phase contrast MRI, based on vascular centreline extraction in 3D MR angiograms, in Forum de Recherche en Génie Biologique et Médical, Nancy, France, 2005, pp. 86-87.
[ZAHN-17b]Pattern analysis of the kinematics in ultrasound videos of the common carotid artery – Application to cardiovascular risk evaluation, in International Forum on Medical Imaging in Asia – IFMIA, Tenbusu, Naha, Okinawa, Japan, 2017.
[ORKI-95a]M. Orkisz, Prise en compte des discontinuités dans l'estimation du mouvement : une revue, in Journée d'études : le mouvement dans les images et les signaux, SEE Club 29 et CNRS GDR 134, Paris, France, 1995.
[HERN-02b]M. Hernández Hoyos, Orkisz, M., Magnin, I. E., and Douek, P., Quantification de la sténose artérielle dans des images ARM 3D fondée sur l'extraction automatique de l'axe central du vaisseau, in Journées Françaises de Radiologie, Paris, France, 2002, vol. Abstr, p. 1423.
[MORA-14a]A. Morales Pinzón, Hernández Hoyos, M., Richard, J. C., Torres González, J. S., and Orkisz, M., Quantification of aeration in 3D CT images from induced acute respiratory distress syndrome, in Seminario Internacional de Ingeniería Biomédica, Bogotá, Colombie, 2014.
[HADD-05d]R. Haddad, Clarysse, P., Orkisz, M., Revel, D., and Magnin, I. E., A Realistic Anthropomorphic Dynamic Heart Phantom, in Computers in Cardiology, Lyon, France, 2005, pp. 801-804.
[HADD-05b]R. Haddad, Clarysse, P., Orkisz, M., Revel, D., and Magnin, I. E., A realistic anthropomorphic numerical model of the beating heart, in Functional Imaging and Modeling of the Heart, Barcelona, Spain, 2005, pp. 384-393.
[CORR-12]R. A. Corredor Jerez, Zuluaga, M. A., Lozano, F., Orkisz, M., and Hernández Hoyos, M., Segmentación de lumen arterial mediante Support Vector Machines en imágenes de TAC, in Seminario de Ingeniería Biomédica – SIB, Bogotá, Colombia, 2012, pp. 9-10.
[PRIE-12e]J. C. Prieto, Pérez Romanello, C., Pérez Romanello, V., Revol-Muller, C., Odet, C., Orkisz, M., and Hernández Hoyos, M., Segmentación del árbol vascular pulmonar, in XXXVIII Conferencia Latinoamericana en Informática (CLEI), Medellín, Colombia, 2012, pp. 1-7.
[CARR-06c]J. F. Carrillo, Hernández Hoyos, M., Dávila Serrano, E. E., and Orkisz, M., Segmentación y visualización arterial en ARM y TAC, in XXXI Congreso Colombiano de Radiología, Cartagena, Colombia, 2006, pp. 21-22 (abstract).
[FLOR-06a]L. Flórez-Valencia, Azencot, J., Vincent, F., Orkisz, M., and Magnin, I. E., Segmentation and quantification of blood vessels in 3d images using a right generalized cylinder state model, in Int. Conf. Image Processing, Atlanta, GA, USA, 2006, pp. 2441-2444.
[RICH-13b]J. C. Richard, Pouzot, C., Morales Pinzón, A., Torres González, J. S., Ortega, D. C., Orkisz, M., Neyran, B., Lavenne, F., and Guérin, C., The significance of viscoelastic parameters in experimental Acute Respiratory Distress Syndrome. A lung CT study., in European Society of Intensive Care Medicine, Paris, 2013, Intensive Care Medicine., vol. 39, no. Suppl 2, p. S494.
[FLOR-15]L. Flórez-Valencia, Morales Pinzón, A., Richard, J. C., Hernández Hoyos, M., and Orkisz, M., Simultaneous skeletonization and graph description of airway trees in 3D CT images, in GRETSI, Lyon, France, 2015.
[MANS-01a]C. Mansard, Anwander, A., Chaabane, L., Orkisz, M., Neyran, B., Douek, P., and Magnin, I. E., Size independent active contour model for blood vessel lumen quantification applied to MRA and to high resolution magnetic resonance image, in MICCAI'01, Utrecht, The Nederlands, 2001.
[LIU-95b]W. Y. Liu, Orkisz, M., Magnin, I. E., and Brion, R., Spatial Discontinuity Detection and Temporal Smoothing for Heart-Wall Motion Estimation from TM-mode Echocardiographic Images, in Computers in Cardiology, Vienna, Austria, 1995, pp. 561–564.
[FLAM-97]T. Flam, Saighi, D., Bourlion, M., Orkisz, M., Farchtchian, T., Gerbaud, P. F., Charif Chefchaouni, M., Thouin, N., and Debré, B., Suivi automatique des calculs par reconnaissance d'image en temps réel, en cours de lithotritie extra-corporelle : principes et avantages du sytème Echotrack, in Congrès Français d'Urologie, Paris, France, 1997, p. 6A.
[ORKI-02c]M. Orkisz and Hernández Hoyos, M., Suivi de vaisseaux sanguins dans des images 3D à l'aide d'un modèle de base de moments, in Mathématiques et Imagerie, Journée 'Application à la modélisation et l'imagerie en Cardio-Vasculaire', Lyon, France, 2002.
[ZULU-10b]M. A. Zuluaga, Orkisz, M., Hernández Hoyos, M., Lozano Martínez, F., and Magnin, I. E., Towards vascular abnormality detection: an SVM approach, in 24rth CARS - Comput Assisted Radiol Surg, Geneva, Switzerland, 2010, vol. 5-suppl.1, pp. S355-6 (abstract).
[ZAHN-14a]G. Zahnd, Orkisz, M., Balocco, S., Sérusclat, A., Moulin, P., and Vray, D., Tracking arterial wall motion in a 2D+t volume, in IEEE-EMBS International Conferences on Biomedical and Health Informatics, Valencia, Spain, 2014.
[BRES-96]C. Bresson, Orkisz, M., Champin, O., Douek, P., and Magnin, I. E., Traitement d'images angiographiques IRM, in Carrefour de la Fondation Rhône-Alpes Futur, (résumé 2 pages), Lyon, France, 1996.
[HADD-05a]R. Haddad, Clarysse, P., Orkisz, M., Revel, D., and Magnin, I. E., Un modèle numérique anthropomorphique du coeur battant, in Forum de Recherche en Génie Biologique et Médical (JSTIM-FRGBM'05), Nancy, France, 2005, vol. 26, pp. 77-78.
[ORTE-12]D. C. Ortega, Orkisz, M., Lozano, F., and Hernández Hoyos, M., Uso de Support Vector Machines para la segmentación de costillas en imágenes de TAC, in Seminario de Ingeniería Biomédica – SIB, Bogotá, Colombia, 2012, p. 11.
[TERR-17]Utility of 2D Photography in The Assessment of Penile Curvature in Men With Peyronie’s Disease (PD): The GoSoft Study, in American Urological Association Annual Meeting, Boston, MA, USA, 2017, pp. e1138-39.
[RICH-13c]J. C. Richard, Pouzot, C., Morales Pinzón, A., Torres González, J. S., Ortega, D. C., Orkisz, M., Neyran, B., Lavenne, F., and Guérin, C., Validation of alveolar recruitment assessed by the nitrogen washout/washin technique using computed tomography as gold standard., in European Society of Intensive Care Medicine, Paris, 2013, Intensive Care Medicine., vol. 39, no. Suppl 2, p. S493.
[MARC-01b]B. Marchand, Douek, P., Robert, P., Corot, C., Roux, J. P., Adeleine, P., Hernández Hoyos, M., Crémillieux, Y., Orkisz, M., and Canet, E., Value of MRA sequences and contrast agents for the evaluation of high-degree stenosis : a phantom study, in International Society of Magnetic Resonance in Medicine Scientific Meeting, Glasgow, UK, 2001.
[HERN-05b]M. Hernández Hoyos, Orlowski, P., Piatkowska-Janko, E., Bogorodzki, P., and Orkisz, M., Vascular centreline extraction in 3D MR angiograms to optimise acquisition plane for blood flow measurement by phase contrast MRI, in 19th CARS - Comput Assisted Radiol Surg, Berlin, Germany, 2005, Int Congress Series ., vol. 1281, pp. 345-350.
[CARR-06b]J. F. Carrillo, Dávila Serrano, E. E., Hernández Hoyos, M., and Orkisz, M., Vascular tree extraction from 3D images, in 20th CARS - Computer Assisted Radiology and Surgery, Osaka, Japan, 2006, p. 462 (abstract).
[ORKI-96a]M. Orkisz, Douek, P., Bresson, C., and Magnin, I. E., Vessel Visibility Improvement in MR Angiography by Anisotropic Non-Linear Filtering, in International Society of Magnetic Resonance in Medicine Scientific Meeting, New York, USA, 1996, p. 1649.
[CHAM-96b]O. Champin, Orkisz, M., Magnin, I. E., and Douek, P., Vessel visibility improvement in MR angiography by using anisotropic non-linear filtering, in Radiol Soc North Am Meeting, (résumé), Chicago, USA, 1996, p. 530.
[FLOR-12a]L. Flórez-Valencia, Dávila Serrano, E. E., Riveros Reyes, J. G., Bernard, O., Latt, J., Malaspinas, O., Chopard, B., Courbebaisse, G., and Orkisz, M., Virtual deployment of pipeline flow diverters in cerebral vessels with aneurysms to understand thrombosis, in MICCAI-Workshop on Computer Assisted Stenting, Nice, France, 2012, pp. 49-56 (electronic proc.).
[RICH-13d]J. C. Richard, Pouzot, C., Morales Pinzón, A., Torres González, J. S., Ortega, D. C., Orkisz, M., Neyran, B., Lavenne, F., and Guérin, C., Viscoelastic parameters of the respiratory system and tidal recruitment. A lung CT investigation in experimental Acute Respiratory Distress Syndrome., in European Society of Intensive Care Medicine, Paris, 2013, Intensive Care Medicine., vol. 39, no. Suppl 2, p. S495.
HDR
[ORKI-03]M. Orkisz, Segmentation de formes linéiques et suivi d'objets déformables dans des images médicales 2D et 3D. INSA Lyon, 2003.
Coquerez J.P. (rap.), Jolion J.M. (rap.), Magnin I.E., Preteux F. (rap.) et Revel D.
Invited Conference
[ORKI-14b]M. Orkisz, Advances in assessing arterial-wall kinetics from ultrasound-image sequences. Warsaw, Poland, 2014.
[ORKI-00b]M. Orkisz, Hernández Hoyos, M., Magnin, I. E., and Douek, P., Advances in image processing techniques applied to 3D MRA images enhancement, segmentation and quantification - A survey and contributions, XII Int. Workshop on MRA, vol. 12. Lyon, France, p. 44, 2000.
[ORKI-15]M. Orkisz, Hernández Hoyos, M., and Flórez-Valencia, L., Angiographic image processing to detect and quantify arterial lesions. GdR ISIS et STIC Santé, ANR VIVABRAIN, Paris 23-25 June 2015, 2015.
[ORKI-99b]M. Orkisz, Hernández Hoyos, M., and Douek, P., Automatic vessel axis extraction and equivalent diameter estimation from 3D MRA data, XI Int. Workshop on MRA, vol. 41. Lund, Sweden, p. 63, 1999.
[COUR-12]G. Courbebaisse, Latt, J., Malaspinas, O., Orkisz, M., and Chopard, B., Blood flow simulation within Stented Intracranial Aneurysm, ICFD 2012, Ninth International Conference on Flow Dynamics. Sendai, Japan, 2012.
[ORKI-98d]M. Orkisz and Hernández Hoyos, M., Développements récents dans le traitement d'images : principes des techniques de segmentation d'images vasculaires 3D, 2-èmes Journées du Groupe de Recherche et de Réflexion en Angiographie par Résonance Magnétique. Paris, France, pp. 94-103, 1998.
[ORKI-02b]M. Orkisz and Hernández Hoyos, M., From inertia matrix to the analysis of vascular pathologies, Int Conf Computer Vision and Graphics. Zakopane, Poland, pp. 6-15, 2002.
[ORKI-09a]M. Orkisz, Medical imaging in CREATIS-LRMN, Inauguration de COLIVRI, Universidad de los Andes. Bogota, Colombia, 2009.
[ORKI-01b]M. Orkisz and Hernández Hoyos, M., Models for 3D vascular image analysis, Med. Informatics and Technologies, vol. 2. Jaszowiec, Poland, pp. IP13-IP22, 2001.
[ORKI-01f]M. Orkisz and Hernández Hoyos, M., Models for 3D Vascular Image Analysis, Computer Graphics, Image Processing and Recognition. Warsaw, Poland, 2001.
Journal Article
[FLOR-04b]L. Flórez-Valencia, Montagnat, J., and Orkisz, M., 3D graphical models for vascular-stent pose simulation, Mach Graph Vision, vol. 13, pp. 235-248, 2004.
[FLOR-07b]L. Flórez-Valencia, Montagnat, J., and Orkisz, M., 3D models for vascular lumen segmentation in MRA images and for artery-stenting simulation, Innov Tech Biol Med - RBM, vol. 28, pp. 65-71, 2007.
[ZULU-10d]M. A. Zuluaga, Orkisz, M., Delgado Leyton, E. J. F., Doré, V., Morales Pinzón, A., and Hernández Hoyos, M., Adaptación del algoritmo MARACAS para la segmentación de la bifurcación de la arteria carótida y cuantificación de estenosis en imágenes TAC, Actas Biol Colombianas, vol. 15, pp. 195 - 210, 2010.
[ORKI-00a]M. Orkisz, Hernández Hoyos, M., Douek, P., and Magnin, I. E., Advances of blood vessel morphology analysis in 3D magnetic resonance images, Mach Graph Vision, vol. 9, pp. 463–471, 2000.
[ORKI-98b]M. Orkisz, Farchtchian, T., Bourlion, M., Gimenez, G., Redarce, H., Flam, T. A., Saighi, D., and Debré, B., Application du traitement d'images au suivi en temps réel de calculs urinaires en lithotritie extra-corporelle, Innov Tech Biol Med, vol. 19 Spe, pp. 315-323, 1998.
[HERN-05]M. Hernández Hoyos, Orkisz, M., Douek, P., and Magnin, I. E., Assessment of carotid artery stenoses in 3D contrast-enhanced magnetic resonance angiography, based on improved generation of the centerline, Mach Graph Vision, vol. 14, pp. 349-378, 2005.
[ZULU-11a]M. A. Zuluaga, Magnin, I. E., Hernández Hoyos, M., Delgado Leyton, E. J. F., Lozano, F., and Orkisz, M., Automatic detection of abnormal vascular cross-sections based on Density Level Detection and Support Vector Machines, Int J Comput Assist Radiol Surg, vol. 6, pp. 163-174, 2011.
[ZULU-14]M. A. Zuluaga, Orkisz, M., Dong, P., Pacureanu, A., Gouttenoire, P. J., and Peyrin, F., Bone canalicular network segmentation in 3D nano-CT images through geodesic voting and image tessellation, Physics in Medicine and Biology, vol. 59, pp. 2155–2171, 2014.
[FLOR-10a]L. Flórez-Valencia, Azencot, J., and Orkisz, M., Carotid arteries segmentation in CT images with use of a right generalized cylinder model, Revista Colombiana de Computación, vol. 11, pp. 79-93, 2010.
[RUDY-14]R. D. Rudyanto, Kerkstra, S., Rikxoort, E. M., Fetita, C., Brillet, P., Lefevre, C., Xue, W., Zhu, X., Liang, J., Öksüz, I., Ünay, D., Kadipasaoglu, K., San José Estépar, R., Ross, J. C., Washko, G. R., Prieto, J. C., Hernández Hoyos, M., Orkisz, M., Meine, H., Hüllebrand, M., Stöcker, C., Lopez Mir, F., Naranjo, V., Villanueva, E., Staring, M., Xiao, C., Stoel, B. C., Fabijanska, A., Smistad, E., Elster, A. C., Lindseth, F., Foruzan, A. H., Kiros, R., Popuri, K., Cobzas, D., Jimenez-Carretero, D., Santos, A., Ledesma-Carbayo, M. J., Helmberger, M., Urschler, M., Pienn, M., Bosboom, D. G. H., Campo, A., Prokop, M., Jong, P. A., Ortiz-de-Solorzano, C., Muñoz-Barrutia, A., and van Ginneken, B., Comparing algorithms for automated vessel segmentation in computed tomography scans of the lung: The VESSEL12 study, Medical Image Analysis, vol. 18, pp. 1217-1232, 2014.
[HERN-02a]M. Hernández Hoyos, Orkisz, M., Puech, P., Mansard, C., Douek, P., and Magnin, I. E., Computer assisted analysis of 3D MRA images, Radiographics, vol. 22, pp. 421-436, 2002.
[HERN-12b]M. Hernández Hoyos, Dávila Serrano, E. E., Correa Agudelo, E. M., Torres González, J. S., Corredor Jerez, R. A., Gutiérrez Ossa, F. A., Flórez-Valencia, L., Mouton, C., and Orkisz, M., CreaTools: una plataforma para desarrollo de software de procesamiento de imágenes médicas. Aplicación a la segmentación de arterias coronarias y a la detección automática de lesiones en imágenes de angioTAC, Revista Colombiana de Radiología, vol. 23, pp. 3521-3528, 2012.
[AZEN-03]J. Azencot and Orkisz, M., Deterministic and Stochastic State Model of Right Generalized Cylinder (RGC-sm): Application in Computer Phantoms Synthesis, Graphical Models, vol. 65, pp. 323-350, 2003.
[MARC-01a]B. Marchand, Hernández Hoyos, M., Orkisz, M., and Douek, P., Diagnostic des sténoses de l'artère rénale en Angiographie par Résonance Magnétique et appréciation du degré de sténose, J Mal Vasc, vol. 25, pp. 312-320, 2001.
[ORLO-09]P. Orlowski and Orkisz, M., Efficient computation of Hessian-based enhancement filters for tubular structures in 3D images, Ingénierie et Recherche Biomédicale - IRBM, vol. 30, pp. 128–132, 2009.
[ORKI-96c]M. Orkisz and Clarysse, P., Estimation du flot optique en présence de discontinuités : une revue, Traitement du Signal, vol. 13, pp. 489-513, 1996.
[HAME-11]K. Hameeteman, Zuluaga, M. A., Freiman, M., Joskowicz, L., Cuisinaire, O., Flórez-Valencia, L., Gülsün, M. A., Krissian, K., Mille, J., Wong, W. C. K., Orkisz, M., Tek, H., Hernández Hoyos, M., Benmansour, F., Chung, A. C. S., Rozie, S., van Gils, M., van den Borne, L., Sosna, J., Berman, P., Cohen, N., Douek, P., Sánchez, I., Aissat, M., Schaap, M., Metz, C. T., van der Lugt, A., Krestin, G., Niessen, W. J., and van Walsum, T., Evaluation Framework for Carotid Bifurcation Lumen Segmentation and Stenosis Grading, Med Image Anal, vol. 15, pp. 477-488, 2011.
[ZAHN-13a]G. Zahnd, Orkisz, M., Sérusclat, A., Moulin, P., and Vray, D., Evaluation of a Kalman-based block matching method to assess the bi-dimensional motion of the carotid artery wall in B-mode ultrasound sequences, Medical Image Analysis, vol. 17, pp. 573–585, 2013.
[HERN-06b]M. Hernández Hoyos, Serfaty, J. M., Maghiar, A., Mansard, C., Orkisz, M., Magnin, I. E., and Douek, P., Evaluation of semi-automatic arterial stenosis quantification, Int J Comput Assist Radiol Surg, vol. 1, pp. 167-175, 2006.
[ORKI-02a]M. Orkisz, Frery, A., Durning, B., Chapet, O., Mornex, F., and Magnin, I. E., Feasibility of motion estimation and tracking in portal images during treatment of pulmonary cancers by conformal radiotherapy, Image Process Comm, vol. 7, pp. 63–76, 2002.PDF icon orkisz_IPC_2002.pdf (354.04 KB)
[ZULU-14a]M. A. Zuluaga, Hernández Hoyos, M., and Orkisz, M., Feature selection based on empirical-risk function to detect lesions in vascular Computed Tomography images, IRBM, vol. 35, pp. 244-254, 2014.
[ZAHN-17a]A fully-automatic method to segment the carotid artery layers in ultrasound imaging - Application to quantify the compression-decompression pattern of the intima-media complex during the cardiac cycle, Ultrasound in Medicine and Biology, vol. 43, pp. 239-257, 2017.
[COUR-16]E. - J. Courtial, Fanton, L., Orkisz, M., Douek, P., Huet, L., and Fulchiron, R., Hyper-viscoelastic behavior of healthy abdominal aorta, IRBM, vol. 37, pp. 158-164, 2016.
[COUR-15b]E. - J. Courtial, Orkisz, M., Douek, P., Huet, L., and Fulchiron, R., Identifying hyper-viscoelastic model parameters from an inflation-extension test and ultrasound images, Experimental Mechanics, vol. 55, pp. 1353-1366, 2015.
[ORKI-98c]M. Orkisz, Farchtchian, T., Saighi, D., Bourlion, M., Thiounn, N., Gimenez, G., Debré, B., and Flam, T. A., Image-based renal stone tracking to improve efficacy in extra-corporeal lithotripsy, J Urol, vol. 160, pp. 1237-1240, 1998.
[ORKI-97a]M. Orkisz, Bresson, C., Magnin, I. E., Champin, O., and Douek, P., Improved vessel visualization in MR angiography by non-linear anisotropic filtering, Magn Reson Med, vol. 37, pp. 914-919, 1997.
[QORC-17d]Kalman-Based Carotid-Artery Longitudinal-Kinetics Estimation and Pattern Recognition, IRBM, vol. 38, pp. 219-223, 2017.
[ORKI-92]M. Orkisz, Localisation d'objets mobiles dans des scènes naturelles filmées par une caméra fixe, Traitement du Signal, vol. 9, pp. 325–346, 1992.
[MORA-17b]Lung Segmentation by Cascade Registration, IRBM, vol. 38, pp. 266-280, 2017.
[ZULU-09e]M. A. Zuluaga, Orkisz, M., and Hernández Hoyos, M., Mejoramiento de la segmentación arterial coronaria a traves del modelamiento del volumen parcial en imágenes TAC, Revista Colombiana de Radiología, vol. 20, pp. 2702-2707, 2009.
[CANT-07c]D. Cantor Rivera, Orkisz, M., Arias, J. A., Uriza, L. F., and Hernández Hoyos, M., Modelamiento en 3D de patologías vasculares a partir de imágenes de resonancia magnética sustraídas, Revista Colombiana de Radiología, vol. 18, pp. 2225-2232, 2007.
[ORKI-08]M. Orkisz, Flórez-Valencia, L., and Hernández Hoyos, M., Models, algorithms and applications in vascular image segmentation, Mach Graph Vision, vol. 17, pp. 5-33, 2008.
[ORKI-01a]M. Orkisz and Hernández Hoyos, M., Models for 3D vascular image analysis, J Med Inform Technol, vol. 2, pp. 13-22, 2001.
[ZAHN-15a]G. Zahnd, Balocco, S., Sérusclat, A., Moulin, P., Orkisz, M., and Vray, D., Progressive attenuation of the longitudinal kinetics in the common carotid artery: preliminary in vivo assessment, Ultrasound in Medicine & Biology, vol. 41, pp. 339-345, 2015.
[MANS-04]C. Mansard, Canet-Soulas, E., Anwander, A., Chaabane, L., Neyran, B., Serfaty, J. M., Magnin, I. E., Douek, P., and Orkisz, M., Quantification of multi-contrast vascular MR Images with the NLSnake, an active contour model : in vitro validation and in vivo evaluation, Magn Reson Med, vol. 51, pp. 370-379, 2004.
[HADD-05c]R. Haddad, Clarysse, P., Orkisz, M., Revel, D., and Magnin, I. E., A realistic anthropomorphic numerical model of the beating heart, Innov Tech Biol Med - RBM, vol. 26, pp. 270-272, 2005.
[ORKI-99a]M. Orkisz, Bourlion, M., Gimenez, G., and Flam, T. A., Real-time target tracking applied to improve fragmentation of renal stones in extra-corporeal lithotripsy, Mach Vision Appl, vol. 11, pp. 138-144, 1999.
[CARR-07]J. F. Carrillo, Hernández Hoyos, M., Dávila Serrano, E. E., and Orkisz, M., Recursive tracking of vascular tree axes in 3D medical images, Int J Comput Assist Radiol Surg, vol. 1, pp. 331-339, 2007.
[RICH-14]J. C. Richard, Pouzot, C., Morales Pinzón, A., Torres González, J. S., Orkisz, M., Neyran, B., Hernández Hoyos, M., Lavenne, F., and Guérin, C., Reliability of the nitrogen washout-washin technique to assess end-expiratory lung volume at variable PEEP and tidal volumes, Intensive Care Medicine Experimental, vol. 2, 2014.
[CARR-06d]J. F. Carrillo, Hernández Hoyos, M., Dávila Serrano, E. E., and Orkisz, M., Segmentación y visualización arterial en ARM y TC, Revista Colombiana de Radiología, vol. 17, pp. 2028-2036, 2006.
[ORKI-14]M. Orkisz, Hernández Hoyos, M., Pérez Romanello, V., Pérez Romanello, C., Prieto, J. C., and Revol-Muller, C., Segmentation of the pulmonary vascular trees in 3D CT images using variational region-growing, IRBM, vol. 35, pp. 11-19, 2014.
[MORA-14]A. Morales Pinzón, Orkisz, M., Rodríguez Useche, C. M., Torres González, J. S., Teillaud, S., Sánchez, J. A., and Hernández Hoyos, M., A semi-automatic method to extract canal pathways in 3D micro-CT images of octocorals, PLoS ONE, 2014.
[ZAHN-14]G. Zahnd, Orkisz, M., Sérusclat, A., Moulin, P., and Vray, D., Simultaneous extraction of carotid artery intima-media interfaces in ultrasound images - Assessment of wall thickness temporal variation during the cardiac cycle, Int J Comput Assist Radiol Surg, vol. 9, pp. 645-658, 2014.
[KIRI-2013]H. A. Kirişli, Schaap, M., Metz, C., Dharampal, A. S., Meijboom, W. B., Papadopoulou, S. L., Dedic, A., Nieman, K., de Graaf, M. A., Meijs, M. F. L., Cramer, M. J., Broersen, A., Cetin, S., Eslami, A., Flórez-Valencia, L., Lor, K. L., Matuszewski, B., Melki, I., Mohr, B., Öksüz, I., Shahzad, R., Wang, C., Kitslaar, P. H., Unal, G., Katouzian, A., Orkisz, M., Chen, C. M., Precioso, F., Najman, L., Masood, S., Ünay, D., van Vliet, L., Moreno, R., Goldenberg, R., Vuçini, E., Krestin, G. P., Niessen, W. J., and van Walsum, T., Standardized evaluation framework for evaluating coronary artery stenoses detection, stenoses quantification and lumen segmentation algorithms in Computed Tomography Angiography, Medical Image Analysis, vol. 17, pp. 859–876, 2013.
[SCHA-09]M. Schaap, Metz, C. T., van Walsum, T., van der Giessen, A. G., Weustink, A. C., Mollet, N. R., Bauer, C., Bogunović, H., Castro, C., Deng, X., Dikici, E., O'Donnell, T., Frenay, M., Friman, O., Hernández Hoyos, M., Kitslaar, P. H., Krissian, K., Kühnel, C., Luengo-Oroz, M. A., Orkisz, M., Smedby, Ö., Styner, M., Szymczak, A., Tek, H., Wang, C., Warfield, S. K., Zhang, Y., Zambal, S., Krestin, G. P., and Niessen, W. J., Standardized evaluation methodology and reference database for evaluating coronary artery centerline extraction algorithms, Med Image Anal, vol. 13, pp. 701–714, 2009.
[MARC-02]B. Marchand, Douek, P., Robert, P., Corot, C., Roux, J. P., Adeleine, P., Hernández Hoyos, M., Crémillieux, Y., Orkisz, M., and Canet-Soulas, E., Standardized MR protocol for the evaluation of MRA sequences and/or contrast agents effects in high-degree arterial stenosis analysis, Magma, vol. 14, pp. 259–267, 2002.
[MORA-17a]A tree-matching algorithm: Application to airways in CT images of subjects with the acute respiratory distress syndrome, Medical Image Analysis, vol. 35, pp. 101 - 115, 2017.
[HERN-06a]M. Hernández Hoyos, Orlowski, P., Piatkowska-Janko, E., Bogorodzki, P., and Orkisz, M., Vascular centreline extraction in 3D MR angiograms applied to select acquisition plane for blood flow measurement by phase contrast MRI, Int J Comput Assist Radiol Surg, vol. 1, pp. 51-61, 2006.
Miscellaneous
[ORKI-95b]M. Orkisz, Brion, R., and Gonnot, G., Echocardiographic Image Sequence Data Base : Left Ventricle in Short Axis View. 1995.
[QORC-16]Estimation and modelling of carotid wall kinetics for early detection of atherosclerosis, SANTE@LabEx: 1er Forum en Rhone-Alpes Auvergne des LabEx en Santé, Lyon, 13 déc. 2016. pp. 80-81, 2016.PDF icon poster (417.1 KB)
[QORC-17c]Modélisation et quantification de la cinématique de la paroi artérielle pour le dépistage précoce de l'athérosclérose - Journée Scientifique de la Faculté des Sciences et Technologies, Université Lyon 1. 2017.
[ORKI-95d]M. Orkisz, Basset-Merle, A., and Magnin, I. E., Motion Estimation from B-mode Echocardiographic Images. 1995.
[LIU-95c]W. Y. Liu, Orkisz, M., and Magnin, I. E., Motion Estimation from M-mode Echocardiographic Images. 1995.
[ORKI-95c]M. Orkisz, Prise en compte des discontinuités dans l'estimation du mouvement : une revue. 1995.
[ORKI-02e]M. Orkisz and Hernández Hoyos, M., Suivi de vaisseaux sanguins dans des images 3D à l'aide d'un modèle de base de moments. 2002.
[BRES-96b]C. Bresson, Orkisz, M., Champin, O., Douek, P., and Magnin, I. E., Traitement d'images angiographiques IRM. 1996.
Thesis
[COUR-15]E. - J. Courtial, Elaboration de matériaux silicone au comportement mécanique adapté pour la réalisation de fantômes aortiques patients-spécifiques, Université Claude Bernard Lyon 1, Lyon, 2015.
Jury : AUBRY Thierry (rapporteur), AVRIL Stéphane (président), DOUEK Philippe, FULCHIRON René (superviseur), HUET Laurent, LALANDE Alain (rapporteur), ORKISZ Maciej (co-superviseur)
PDF icon Edwin-Joffrey COURTIAL.pdf (8.62 MB)
[ZAHND-12d]G. Zahnd, Estimation du mouvement bi-dimensionnel de la paroi artérielle en imagerie ultrasonore par une approche conjointe de segmentation et de speckle tracking, INSA de Lyon, 2012.
Jury : Laurent Sarry (rapporteur), Denis Kouamé (rapporteur), Christian Jutten, André Sérusclat, Loïc Boussel, D. Vray (superviseur), Maciej Orkisz (co-superviseur)
PDF icon PhD_Guillaume_Zahnd.pdf (14.38 MB)
[MORA-16]A. Morales Pinzón, Lung segmentation and airway tree matching : Application to aeration quantification in CT images of subjects with ARDS, Université Claude Bernard Lyon 1; Universidad de los Andes, Lyon, Bogotá, 2016.
Jury: Anna Fabijanska, Łódz University of Technology, Rapporteur Isabelle Bloch, Telecom ParisTech, Rapporteur Fraçoise Prêteux, École des Ponts ParisTech Examinateur Jean-Christophe Richard, Université Lyon 1, Hôpital de la Croix Rousse, Examinateur José Tiberio Hernández, Universidad de los Andes, Examinateur Leonardo Flórez Valencia, Pontificia Universidad Javeriana, Examinateur Maciej Orkisz, Université Lyon 1, Directeur de thèse Marcela Hernández Hoyos, Universidad de los Andes, Directeur de thèse
PDF icon Alfredo MORALES PINZON.pdf (20.9 MB)
[ZULU-11d]M. A. Zuluaga, Methods for the automation of vascular lesions detection in computed tomography images, Université Claude Bernard Lyon 1, Lyon, 2011.
Bloch I. (rap.), Hernández J.T. (Pdt), Hernández Hoyos M.(co-Dir.), Magnin I.E., Orkisz M. (co-Dir.), Romero E.E. et Salvado O. (rap.)
[FLOR-06]L. Flórez-Valencia, Modèle d'état de cylindre généralisé et la quantification de sténoses artérielles en imagerie 3D, INSA Lyon, 2006.
Jacques Demongeot (rap.), Philippe Douek, José Tiberio Hernández, Isabelle Magnin (prés.), Maciej Orkisz, Jean Sequeira (rap.)
[HERN-02d]M. Hernández Hoyos, Segmentation anisotrope 3D pour la quantification en imagerie vasculaire par résonnance magnétique, INSA-Lyon, 2002.
Bloch I. (rap.), Douek P., Hernandez J.T., Magnin I.E., Nahum R., Orkisz M. et Sequeira J. (rap.)