Publications

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Conference Paper
[LEPO-11d]B. Leporq, Camarasu-Pop, S., Pilleul, F., and Beuf, O., 3D-liver MR-DCE imaging for quantitative perfusion mapping using EGI grid, in Colloque Recherche en Imagerie et Technologies pour la Santé (RITS), Rennes, France, 2011.
[LEPO-11c]B. Leporq, Camarasu-Pop, S., Pilleul, F., and Beuf, O., 3D-liver quantitative perfusion mapping using EGEE grid with MR-DCE imaging and MS-325 blood pool contrast agent, in ISMRM, Montreal, Canada, 2011, p. 2046.
[GLAT-09a]T. Glatard, Zhou, X., Camarasu-Pop, S., Smirnova, O., and Muller, H., A comparison between ARC and gLite for medical image processing on Grids, in 2nd workshop on Medical imaging on GRID, HPC and GPU infrastructures: achievements and perspectives (MICCAI-Grid), London, UK, 2009.PDF icon MICCAI_ARC_gLite-final.pdf (102.37 KB)
[MOUT-13]C. Mouton, Dávila Serrano, E. E., Cervenansky, F., Camarasu-Pop, S., Correa, E., Flórez-Valencia, L., Hernández Hoyos, M., and Orkisz, M., CreaTools: A development framework for medical image processing software ; an application to segmentation, anomaly detection and quantification for coronary arteries, in European BioImage Analysis Symposium 2013, IRB Barcelona, Spain, 2013.PDF icon 2013_10_Barcelona_Abstract.pdf (42.41 KB)
[DAVI-12b]E. E. Dávila Serrano, Guigues, L., Cervenansky, F., Camarasu-Pop, S., Riveros Reyes, J. G., Flórez-Valencia, L., Hernández Hoyos, M., and Orkisz, M., CreaTools: a framework to develop medical image processing software. Application to simulate pipeline stent deployment in intracranial vessels with aneurysms, in Int. Conf. Comput. Vision. Graphics., Warsaw, Poland, 2012, vol. LNCS 7594, pp. 55-62.
[DAVI-12c]E. E. Dávila Serrano, Guigues, L., Roux, J. P., Cervenansky, F., Mouton, C., Camarasu-Pop, S., Flórez-Valencia, L., Hernández Hoyos, M., and Orkisz, M., CreaTools: applications and development framework for medical image-processing software, in Libre Software Meeting, Geneva, 2012.
[DAVI-12a]E. E. Dávila Serrano, Guigues, L., Roux, J. P., Cervenansky, F., Camarasu-Pop, S., Flórez-Valencia, L., Hernández Hoyos, M., and Orkisz, M., CreaTools: applications and development framework for medical image-processing software, in ISBI Workshop on Open Source Medical Image Analysis Software, Barcelona, Spain, 2012.
[CAMA-08a]S. Camarasu-Pop, Benoit-Cattin, H., Montagnat, J., and Racoceanu, D., Grids for Content-Based Medical Image Indexing and Retrieval, in ICT4Health, Oncomedia, Manila, The Philippines, 2008.
[CHAI-17]Modeling Distributed Platforms from Application Traces for Realistic File Transfer Simulation, in 17th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGrid), 2017.
[GLAT-09]T. Glatard and Camarasu-Pop, S., Modelling pilot-job applications on production grids, in 7th international workshop on Algorithms, Models and Tools for Parallel Computing on Heterogeneous Platforms (Heteropar 09), Delft, The Netherlands, 2009.PDF icon heteropar09-glatard-camarasu-final.pdf (1.53 MB)
[FERR-11]R. Ferreira da Silva, Camarasu-Pop, S., Grenier, B., Hamar, V., Manset, D., Montagnat, J., Revillard, J., Balderrama, J. R., Tsaregorodtsev, A., and Glatard, T., Multi-infrastructure workflow execution for medical simulation in the Virtual Imaging Platform, in HealthGrid 2011, Bristol, UK, 2011.PDF icon hg11-platform.pdf (856.36 KB)
[GLAT-12]T. Glatard, Marion, A., Benoit-Cattin, H., Camarasu-Pop, S., Clarysse, P., Ferreira da Silva, R., Forestier, G., Gibaud, B., Lartizien, C., Liebgott, H., Moulin, K., and Friboulet, D., Multi-modality image simulation with the virtual imaging platform: Illustration on cardiac MRI and echography, in IEEE International Symposium on Biomedical Imaging (ISBI), Barcelona, Spain, 2012, pp. 98-101.PDF icon isbi2012-vip.pdf (808.08 KB)
[MARI-11b]A. Marion, Forestier, G., Benoit-Cattin, H., Camarasu-Pop, S., Clarysse, P., Ferreira da Silva, R., Gibaud, B., Glatard, T., Hugonnard, P., Lartizien, C., Liebgott, H., Specovius, S., Tabary, J., Valette, S., and Friboulet, D., Multi-modality medical image simulation of biological models with the Virtual Imaging Platform (VIP), in The 24th International Symposium on Computer-Based Medical Systems (CBMS 2011), Bristol, UK, 2011, pp. 1-6.PDF icon cbms2011-multimod.pdf (726.29 KB)
[LI-10]T. Li, Camarasu-Pop, S., Glatard, T., Grenier, T., and Benoit-Cattin, H., Optimization of Mean-Shift scale parameters on the EGEE grid, in Studies in health technology and informatics, Proceedings of Healthgrid 2010, 2010, vol. 159, pp. 203-214.PDF icon hg10.pdf (1.03 MB)
[CAMA-10a]S. Camarasu-Pop, Cervenansky, F., Cardenas, Y., Nief, J., and Benoit-Cattin, H., Overview of Medical Data Management Solutions for Research Communities, in CCGridHealth, Melbourne, Australia, 2010.
[GUET-11b]P. Gueth, Camarasu-Pop, S., Glatard, T., Grevillot, L., and Sarrut, D., PBS proton treatment plan simulation with the GATE-Lab, in 50th International PTCOG meeting (Particle Therapy Co-Operative Group), Philadelphia, US, 2011.
[MAHI-17b]Protocole de caractérisation d’antenne radiofréquence pour l’IRM, in SFRMBM, Bordeaux, FRANCE, 2017.
[MAHI-17a]PROTOCOLE DE CARACTERISATION DE CAPTEUR IRM, in RITS, Lyon, FRANCE, 2017.
[CAMA-13a]S. Camarasu-Pop, Glatard, T., and Benoit-Cattin, H., Simulating Application Workflows and Services Deployed on the European Grid Infrastructure, in 13th IEEE/ACM International Symposium on Cluster, Cloud, and Grid Computing (CCGrid), Delft, The Netherlands, 2013, p. 18--25.PDF icon simulation_ccgrid2013_revised.pdf (208.3 KB)
[MAHI-17b]SNR and volume characterization of RF coils: A simple procedure and an automatic post-processing tool for a straightforward comparison, in 25th Annual meeting of the ISMRM, Honolulu, Hawaï, USA, 2017.
[CAMA-08b]S. Camarasu-Pop, Benoit-Cattin, H., Guigues, L., Clarysse, P., Bernard, O., and Friboulet, D., Towards a Virtual Radiological Platform Based on a Grid Infrastructure, in Medical imaging on grids: achievements and perspectives (MICCAI Grid Workshop), New York, USA, 2008, pp. 85-95.
[MAHE-09]K. Maheshwari, Glatard, T., Schaerer, J., Delhay, B., Camarasu-Pop, S., Clarysse, P., and Montagnat, J., Towards Production-level Cardiac Image Analysis with Grids, in HealthGrid'09, Berlin, 2009.PDF icon healthgrid09.pdf (813.4 KB)
[TAN-10]W. - J. Tan, Ching, C. T. M., Camarasu-Pop, S., Calvat, P., and Glatard, T., Two experiments with application-level quality of service on the EGEE grid, in Proceeding of the 2nd workshop on Grids meets autonomic computing, New York, NY, USA, 2010, pp. 11–20.
Journal Article
[GLA18]Boutiques: a flexible framework for automated application integration in computing platforms, GigaScience, vol. inpress, 2018.
[CAMA-16]S. Camarasu-Pop, Glatard, T., and Benoit-Cattin, H., Combining Analytical Modeling, Realistic Simulation and Real Experimentation for the Optimization of Monte-Carlo Applications on the European Grid Infrastructure, Future Generation Computer Systems, vol. 57, pp. 13-23, 2016.
[CAMA-10]S. Camarasu-Pop, Glatard, T., Moscicki, J. T., Benoit-Cattin, H., and Sarrut, D., Dynamic partitioning of GATE Monte-Carlo simulations on EGEE, Journal of Grid Computing, vol. 8, pp. 241-259, 2010.
[LEPO-13a]B. Leporq, Camarasu-Pop, S., Dávila Serrano, E. E., Pilleul, F., and Beuf, O., Enabling 3D-Liver Perfusion Mapping from MR-DCE Imaging Using Distributed Computing, Journal of Medical Engineering, vol. 2013, 2013.
[HATT2018177]The first MICCAI challenge on PET tumor segmentation, Medical Image Analysis, vol. 44, pp. 177 - 195, 2018.
[ZHOU-18]A Framework for the Generation of Realistic Synthetic Cardiac Ultrasound and Magnetic Resonance Imaging Sequences from the same Virtual Patients, IEEE Transactions on Medical Imaging, vol. 37, pp. 741-754, 2018.
[GLAT-11]T. Glatard and Camarasu-Pop, S., A model of pilot-job resource provisioning on production grids, Parallel Computing, vol. 37, pp. 684-692, 2011.PDF icon parco10.pdf (531.99 KB)
[CAMA-13]S. Camarasu-Pop, Glatard, T., Ferreira da Silva, R., Gueth, P., Sarrut, D., and Benoit-Cattin, H., Monte-Carlo Simulation on Heterogeneous Distributed Systems: a Computing Framework with Parallel Merging and Checkpointing Strategies, Future Generation Computer Systems, vol. 29, p. 728--738, 2013.
[COMM-18]Objective Evaluation of Multiple Sclerosis Lesion Segmentation using a Data Management and Processing Infrastructure, Scientific Reports, vol. 869133541861714842334460201527102932142611011155734155, 2018.
[GLAT-17]Software architectures to integrate workflow engines in science gateways, Future Generation Computer Systems, p. -, 2017.
[BERN-16]O. Bernard, Bosch, J. G., Heyde, B., Alessandrini, M., Barbosa, D., D'hooge, J., Camarasu-Pop, S., Cervenansky, F., and Valette, S., Standardized evaluation system for left ventricular segmentation algorithms in 3D echocardiography, IEEE Transactions on Medical Imaging, vol. 35, pp. 1915-1926, 2016.
[GLAT-13]T. Glatard, Lartizien, C., Gibaud, B., Ferreira da Silva, R., Forestier, G., Cervenansky, F., Alessandrini, M., Benoit-Cattin, H., Bernard, O., Camarasu-Pop, S., Cerezo, N., Clarysse, P., Gaignard, A., Hugonnard, P., Liebgott, H., Marache, S., Marion, A., Montagnat, J., Tabary, J., and Friboulet, D., A Virtual Imaging Platform for multi-modality medical image simulation, IEEE Transactions on Medical Imaging, vol. 32, pp. 110-118, 2013.PDF icon tmi-2012.pdf (487.25 KB)
Miscellaneous
[WANG-12]L. Wang, Camarasu-Pop, S., Glatard, T., Zhu, Y. M., and Magnin, I. E., Diffusion MRI Simulation with the Virtual Imaging Platform, Journées scientifiques mésocentres et France Grilles 2012. Paris, France, 2012.
[CAMA-09a]S. Camarasu-Pop, Sarrut, D., Benoit-Cattin, H., and Glatard, T., GATE-Lab. Barcelone, Espagne, 2009.
[ARRA-12]L. Arrabito, Bouvet, D., Camarasu-Pop, S., Cardenas, Y., Clémentin, N., Cordier, H., Gallina, S., Garnier, J., Gay, P., Glatard, T., Hamar, V., Lavalley, C., Mathieu, G., Sapunov, M., Ferreira da Silva, R., and Tsaregorodtsev, A., Instance nationale et multi-communauté de DIRAC pour France Grilles, Journées scientifiques mésocentres et France Grilles 2012. Paris, France, 2012.
[GLAT-09c]T. Glatard, Camarasu-Pop, S., Benoit-Cattin, H., Clarysse, P., Montagnat, J., Moscicki, J., Olabarriaga, S., and Sarrut, D., Integrating pilot-jobs, workflows and virtual resource browser to foster medical image analysis on EGEE. Catania, Italie, 2009.
[45716]T. Glatard, Rousseau, M., Camarasu-Pop, S., Rioux, P., Sherif, T., Beck, N., Adalat, R., and Evans, A. C., Interoperability between the CBRAIN and VIP web platforms for neuroimage analysis. Neuroinformatics 2014, Leiden, Netherlands, 2014.
[CAMA-08c]S. Camarasu-Pop, Benoit-Cattin, H., Guigues, L., and Sarrut, D., Porting ThIS on the EGEE grid. Istanbul, Turquie, 2008.
[CAMA-09]S. Camarasu-Pop, Benoit-Cattin, H., Moscicki, J., Sarrut, D., and Glatard, T., Results and evaluation of ThIS on grid. Catania, Italie, 2009.
[CAMA-08d]S. Camarasu-Pop, Guigues, L., Benoit-Cattin, H., and Sarrut, D., ThIS on the Grid. Clermont-Ferrand, France, 2008.
Thesis
[CAMA-13b]S. Camarasu-Pop, Exploitation d'infrastructures hétérogènes de calcul distribué pour la simulation Monte-Carlo dans le domaine médical, INSA Lyon, Lyon, 2013.
Jury : Frédéric Desprez (Rapporteur), Ignacio Blanquer (Rapporteur), M. Johan Montagnat, Arnaud Legrand, Jakub T. Moscicki, David Sarrut, Tristan Glatard (co-directeur), Hugues Benoit-Cattin (directeur)
PDF icon PhD_manuscript_final_version.pdf (3.99 MB)