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Journal Article

  1. [BOUI-13]G. Bouilhol, Ayadi, M., Rit, S., Thengumpallil, S., Schaerer, J., Vandemeulebroucke, J., Claude, L., and Sarrut, D., “Is abdominal compression useful in lung stereotactic body radiation therapy? A 4DCT and dosimetric lobe-dependent study.”, Physica medica, vol. 29, no. 4, pp. 333-40, 2013.
    http://www.creatis.insa-lyon.fr/~srit/biblio/bouilhol2013.pdf
  2. [FASSI-12]A. Fassi, Riboldi, M., Baroni, G., Schaerer, J., and Sarrut, D., “In Regard to Yang et al”, International Journal of Radiation Oncology * Biology * Physics, vol. 84, 2012.PDF icon Fassi et al._2012_In regard to Yang et al.pdf (45.89 KB)
  3. [BARB-12a]D. C. Barbosa, Dietenbeck, T., Schaerer, J., D'hooge, J., Friboulet, D., and Bernard, O., “B-Spline Explicit Active Surfaces: An efficient framework for real-time 3D region-based segmentation”, IEEE Transactions on Image Processing, vol. 21, pp. 241-251, 2012.
  4. [SCHA-12]J. Schaerer, Fassi, A., Riboldi, M., Cerveri, P., Baroni, G., and Sarrut, D., “Multi-dimensional respiratory motion tracking from markerless optical surface imaging based on deformable mesh registration”, Physics in Medicine and Biology, vol. 57, pp. 357-373, 2012.PDF icon Schaerer et al._2011_Multi-dimensional respiratory motion tracking from markerless optical surface imaging based on deformable mesh registration.pdf (2.04 MB)
    http://www.creatis.insa-lyon.fr/~dsarrut/articles/Schaerer2011.pdf
  5. [SCHA-10]J. Schaerer, Casta, C., Pousin, J., and Clarysse, P., “A dynamic elastic model for segmentation and tracking of the heart in MR image sequences”, Med Image Anal, vol. 14, pp. 738-749, 2010.
  6. [ROUC-07]Y. Rouchdy, Pousin, J., Schaerer, J., and Clarysse, P., “A nonlinear elastic deformable template for soft structure segmentation: application to the heart segmentation in MRI”, Inverse Problems, vol. 23, pp. 1017–1035, 2007.

Conference Paper

  1. [SCHA-11]J. Schaerer, Fassi, A., Riboldi, M., Baroni, G., and Sarrut, D., “Time-consistent parametrization from dynamic optical surface detection for respiratory motion recovery in radiation oncology”, in ESTRO, 2011, vol. 99, p. S454.
  2. [FASSI-11]A. Fassi, Schaerer, J., Riboldi, M., Sarrut, D., and Baroni, G., “A novel CT-based contrast enhancement technique for markerless lung tumor tracking in X-ray projection images”, in ESTRO, 2011, vol. 99, p. S217.
  3. [CASTA-11]C. Casta, Clarysse, P., Pousin, J., Schaerer, J., Croisille, P., and Zhu, Y. M., “Driving Dynamic Cardiac Model Adaptation with MR-Tagging Displacement Information”, in FIMH 2011, 2011, pp. 137-144.
  4. [CAST-11a]C. Casta, Clarysse, P., Pousin, J., Schaerer, J., Croisille, P., and Zhu, Y. M., “Motion constrained cardiac model retrieval from MR Imaging”, in RITS, Rennes, France, 2011.
  5. [CAST-11b]C. Casta, Clarysse, P., Pousin, P., Schaerer, J., Croisille, P., and Zhu, Y. M., “Driving Dynamic Cardiac Model Adaptation with MR-Tagging Displacement Information”, in FIMH, New-York, USA, 2011, pp. 137-144.
  6. [RIT-11b]S. Rit, Pinho, R., Delmon, V., Pech, M., Bouilhol, G., Schaerer, J., Navalpakkam, B., Vandemeulebroucke, J., Seroul, P., and Sarrut, D., “VV, a 4D slicer”, in Proceedings of the Fourth International Workshop on Pulmonary Image Analysis, Toronto, Canada, 2011, pp. 171–175.
    http://www.creatis.insa-lyon.fr/~srit/biblio/rit2011b.pdf
  7. [VAND-10c]J. Vandemeulebroucke, Rit, S., Schaerer, J., and Sarrut, D., “Deformable image registration with automated motion-mask extraction”, in Medical Image Analysis for the Clinic: A Grand Challenge 2010 of the MICCAI Conference, Beijing, 2010.
    http://www.creatis.insa-lyon.fr/~srit/biblio/vandemeulebroucke2010a.pdf
  8. [GREZ-10]L. Grèzes-Besset, Schaerer, J., Clarysse, P., and Sarrut, D., “Apparent motion clustering on Cone-Beam fluoroscopic images for thorax tracking”, in International Conference on the Use of Computers in Radiation Therapy (ICCR), Amsterdam, The Netherlands, 2010.PDF icon lgrezesb_paper.pdf (424.91 KB)
  9. [CAST-10]C. Casta, Clarysse, P., Pousin, J., Schaerer, J., Croisille, P., and Zhu, Y. M., “Incorporating low-level constraints for the retrieval of personalised heart models from dynamic MRI”, in Statistical Atlases and Computational Models of the Heart: Mapping Structure and Function (STACOM), MICCAI 2010 Workshop, 2010, vol. LNCS 6364, pp. 174-183.
  10. [GREZ-10]L. Grèzes-Besset, Schaerer, J., Clarysse, P., and Sarrut, D., “Fluoroscopic Block-Matching-based mean position tracking of respiratory motion for lung cancer radiotherapy”, in ESTRO, 2010, vol. 96, no. S5-656-S654-Sup1, pp. S5-656-S654-Sup1.
    http://download.journals.elsevierhealth.com/pdfs/journals/0167-8140/PIIS0167814010800799.pdf
  11. [FRIN-09]C. Frindel, Robini, M., Schaerer, J., Croisille, P., and Zhu, Y. M., “Improved global cardiac tractography with simulated annealing”, in IEEE ICIP, Cairo, Egypt, 2009, pp. 813-816.
  12. [MAHE-09]K. Maheshwari, Glatard, T., Schaerer, J., Delhay, B., Camarasu-Pop, S., Clarysse, P., and Montagnat, J., “Towards Production-level Cardiac Image Analysis with Grids”, in HealthGrid'09, Berlin, 2009.PDF icon healthgrid09.pdf (813.4 KB)
  13. [CAST-09]C. Casta, Clarysse, P., Schaerer, J., and Pousin, J., “Evaluation of the Dynamic Deformable Elastic Template model for the segmentation of the heart in MRI sequences”, in Midas Journal: MICCAI Workshop - 3D Segmentation in the Clinic: A Grand Challenge III, London, UK, 2009.
  14. [SCHA-08]J. Schaerer, Pousin, J., and Clarysse, P., “A new singular perturbation approach for image segmentation tracking”, in Biomedical Imaging: From Nano to Macro, 2008. ISBI 2008. 5th IEEE International Symposium on, 2008, pp. 1445–1448.
  15. [ROUC-07a]Y. Rouchdy, Pousin, J., Schaerer, J., and Clarysse, P., “A hyperelastic deformable template for cardiac segmentation in MRI”, in Functional Imaging and Modeling of the Heart, Salt Lake City, UT, USA, 2007, vol. LNCS 4466, pp. 443-452.
  16. [GELA-07a]A. Gelas, Schaerer, J., Bernard, O., Friboulet, D., Clarysse, P., Magnin, I. E., and Prost, R., “Radial Basis Functions Collocation Methods For Model-Based Level-set Segmentation”, in IEEE International Conference on Image Processing (ICIP), San Antonio, TX, USA, 2007, vol. 2, pp. 237-240.
  17. [SCHA-07a]J. Schaerer, Gelas, A., Prost, R., Clarysse, P., and Magnin, I. E., “Volumetric Mesh Construction From Scattered Prior Data: Application To Cardiac MR Image Analysis”, in European Signal Processing Conference, Poznań, Poland, 2007, pp. 438-442.
  18. [SCHA-07b]J. Schaerer, Clarysse, P., and Pousin, J., “A New Dynamic Elastic Model for Cardiac Image Analysis”, in Proceedings of the 29th Annual International Conference of the IEEE EMBS, Lyon, France, 2007, pp. 4488-4491.
  19. [WANG-07]X. Wang, Schaerer, J., Qian, Z., Metaxas, D., Chen, T., and Axel, L., “Reconstruction of Detailed Left Ventricle Motion Using Deformable Model from Tagged MR Image”, in Functional Imaging and Modeling of the Heart, 2007, pp. 60-68.
  20. [SCHA-06]J. Schaerer, Qian, Z., Clarysse, P., Metaxas, D., Axel, L., and Magnin, I. E., “Fast and automated creation of patient-specific 3D heart model from tagged MRI”, in From Statistical Atlases to Personalized Models: Understanding Complex Diseases in Populations and Individuals, Satellite Workshop MICCAI 2006, Copenhagen, Denmark, 2006, pp. 91-94.
  21. [POUS-05]J. Pousin, Rouchdy, Y., Picq, M., Schaerer, J., and Clarysse, P., “Constrained 3D elastic model for the segmentation in cardiac MRI”, in Computers In Cardiology, Lyon, France, 2005, pp. 785-788.
  22. [SCHA-05]J. Schaerer, Rouchdy, Y., Clarysse, P., Hiba, B., Croisille, P., Pousin, J., and Magnin, I. E., “Simultaneous Segmentation of the Left and Right Heart Ventricles in 3D Cine MR Images of Small Animals”, in Computers In Cardiology, Lyon, France, 2005, pp. 231-234.

Book Chapter

  1. [GERM-09]C. Germain-Renaud, Breton, V., Clarysse, P., Delhay, B., Gaudeau, Y., Glatard, T., Jeannot, E., Legré, Y., Montagnat, J., Moureaux, J. M., Osorio, A., Pennec, X., Schaerer, J., and Texier, R., “Grid Analysis of Radiological Data”, in Handbook of Research on Computational Grid Technologies for Life Sciences, Biomedicine and Healthcare, M. Cannataro IGI, 2009.

Thesis

  1. [SCHA-08b]J. Schaerer, “Segmentation et suivi de structures par modèle déformable élastique non-linéaire. Application à l'analyse automatisée de séquences d'IRM cardiaques”, INSA Lyon, 2008.
    P. Clarysse (dir.), I. Magnin (co-dir.), L. Najman (Prés.), J. Pousin, L. Axel, A. Montenvert (rap.) et H. Delingette (rap.)