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Journal Article

  1. [GAIG-14]A. Gaignard, Montagnat, J., Gibaud, B., Forestier, G., and Glatard, T., “Domain-specific summarisation of Life-Science e-experiments from provenance traces”, Journal of Web Semantics, vol. 29, p. 19--30, 2014.
  2. [GIBA-14]B. Gibaud, Forestier, G., Benoit-Cattin, H., Cervenansky, F., Clarysse, P., Friboulet, D., Gaignard, A., Hugonnard, P., Lartizien, C., Liebgott, H., Montagnat, J., Tabary, J., and Glatard, T., “OntoVIP: an ontology for the annotation of object models used for medical image simulation”, Journal of Biomedical Informatics, vol. 52, pp. 279-292, 2014.
  3. [GLAT-13]T. Glatard, Lartizien, C., Gibaud, B., Ferreira da Silva, R., Forestier, G., Cervenansky, F., Alessandrini, M., Benoit-Cattin, H., Bernard, O., Camarasu-Pop, S., Cerezo, N., Clarysse, P., Gaignard, A., Hugonnard, P., Liebgott, H., Marache, S., Marion, A., Montagnat, J., Tabary, J., and Friboulet, D., “A Virtual Imaging Platform for multi-modality medical image simulation”, IEEE Transactions on Medical Imaging, vol. 32, pp. 110-118, 2013.PDF icon tmi-2012.pdf (487.25 KB)
  4. [ROGE-13]D. Rogers, Harvey, I., Huu, T. T., Evans, K., Glatard, T., Kallel, I., Taylor, I., Montagnat, J., Jones, A., and Harrison, A., “Bundle and Pool Architecture for Multi-Language, Robust, Scalable Workflow Executions”, Journal of Grid Computing , vol. 11, pp. 457-480, 2013.
    http://link.springer.com/article/10.1007%2Fs10723-013-9267-2
  5. [LING-09a]D. Lingrand, Glatard, T., and Montagnat, J., “Modeling the latency on production grids with respect to the execution context”, Parallel Computing, vol. 35, pp. 493-511, 2009.PDF icon lingrand-glatard-etal_2009.pdf (1.13 MB)
    http://www.sciencedirect.com/science/article/pii/S0167819109000829
  6. [MONT-08a]J. Montagnat, Glatard, T., Campos, I., Castejon, F., Pennec, X., Giuliano, T., Voznesensky, V., and Vuerli, C., “Workflow-based data parallel applications on the EGEE production grid infrastructure”, Journal of Grid Computing, vol. 6, pp. 369–383, 2008.
    http://www.springerlink.com/content/n44056t50613p235/
  7. [GLAT-08i]T. Glatard, Montagnat, J., Lingrand, D., and Pennec, X., “Flexible and efficient workflow deployment of data-intensive applications on grids with MOTEUR”, Journal of High Performance Computing and Applications, vol. 22, pp. 347–360, 2008.
    http://rainbow.polytech.unice.fr/publis/glatard-montagnat-etal:2008.pdf
  8. [GLAT-08j]T. Glatard, Montagnat, J., Emsellem, D., and Lingrand, D., “A Service-Oriented Architecture enabling dynamic services grouping for optimizing distributed workflows execution”, Future Gener Comp Sy, vol. 24, pp. 720–730, 2008.
    http://dx.doi.org/10.1016/j.future.2008.02.011
  9. [FLOR-07b]L. Flórez-Valencia, Montagnat, J., and Orkisz, M., “3D models for vascular lumen segmentation in MRA images and for artery-stenting simulation”, Innov Tech Biol Med - RBM, vol. 28, pp. 65-71, 2007.
  10. [MONT-07]J. Montagnat, Glatard, T., and Lingrand, D., “Texture-based Medical Image Indexing and Retrieval on Grids”, Medical Imaging Technology, vol. 25, 2007.
    http://rainbow.polytech.unice.fr/publis/montagnat-glatard-etal:2007.pdf
  11. [MONT-05f]J. Montagnat, Breton, V., and Magnin, I. E., “Partitioning medical image databases for content-based queries on a grid”, Methods Inf Med, vol. 44, pp. 154-160, 2005.
  12. [MONT-05e]J. Montagnat and Delingette, H., “4D deformable models with temporal constraints : application to 4D cardiac image segmentation”, Med Image Anal, vol. 9, pp. 87-100, 2005.
  13. [GERM-05]C. Germain, Breton, V., Clarysse, P., Gaudeau, Y., Glatard, T., Jeannot, E., Legre, Y., Loomis, C., Magnin, I. E., Montagnat, J., Moureau, J. M., Osorio, A., Pennec, X., and Texier, R., “Grid-enabling medical image analysis”, J Clin Monit Comput, vol. 19, pp. 339-349, 2005.
  14. [FLOR-04b]L. Flórez-Valencia, Montagnat, J., and Orkisz, M., “3D graphical models for vascular-stent pose simulation”, Mach Graph Vision, vol. 13, pp. 235-248, 2004.
    http://www.creatis.insa-lyon.fr/~orkisz/articles/florez_MGV_04.pdf
  15. [MONT-04h]J. Montagnat, Bellet, F., Benoit-Cattin, H., Breton, V., Brunie, L., Duque, H., Legre, Y., Magnin, I. E., Miguet, S., Pierson, J. M., Seitz, L., and Tweed, T., “Medical images simulation, storage, and processing on the European DataGrid testbed”, Journal of Grid Computing, vol. 2, pp. 387-400, 2004.
  16. [MONT-03f]J. Montagnat, Sermesant, M., Delingette, H., and Ayache, N., “4D cylindrical echocardiographic images anisotropic filtering for model based segmentation”, Pattern Recogn Lett, vol. 24, pp. 815-828, 2003.
  17. [BRET-03b]V. Breton, Medina, R., and Montagnat, J., “DataGrid, Prototype of a Biomedical Grid”, Methods Inf Med, vol. 42, pp. 143-148, 2003.

Conference Paper

  1. [CIPI-14]S. Cipière, Ereteo, G., Gaignard, A., Boujelben, N., Gaspard, S., Breton, V., Cervenansky, F., Hill, R. C., Glatard, T., Manset, D., Montagnat, J., Revillard, J., and Maigne, L., “Global Initiative for Sentinel e-Health Network on Grid (GINSENG) Medical data integration and semantic developments for epidemiology”, in Workshop on Clusters, Clouds and Grids for Health, In conjunction with CCGrid 2014, 2014.
  2. [GIBA-12]B. Gibaud, Forestier, G., Benoit-Cattin, H., Cervenansky, F., Clarysse, P., Friboulet, D., Gaignard, A., Hugonnard, P., Lartizien, C., Liebgott, H., Montagnat, J., Tabary, J., and Glatard, T., “OntoVIP: an ontology for the annotation of object models used for medical image simulation”, in IEEE International Conference on Healthcare Informatics, Imaging and Systems Biology (HISB), La Jolla, California, USA, 2012, pp. 110-119.
  3. [MICH-12]F. Michel, Montagnat, J., and Glatard, T., “Technical support for Life Sciences communities on a production grid infrastructure”, in HealthGrid 2012, Amsterdam, The Netherlands, 2012, pp. 81-90.
    http://hal.archives-ouvertes.fr/hal-00677839/PDF
  4. [FERR-11]R. Ferreira da Silva, Camarasu-Pop, S., Grenier, B., Hamar, V., Manset, D., Montagnat, J., Revillard, J., Balderrama, J. R., Tsaregorodtsev, A., and Glatard, T., “Multi-infrastructure workflow execution for medical simulation in the Virtual Imaging Platform”, in HealthGrid 2011, Bristol, UK, 2011.PDF icon hg11-platform.pdf (856.36 KB)
  5. [MONT-10]J. Montagnat, Glatard, T., Reimert, D., Maheshwari, K., Caron, E., and Desprez, F., “Workflow-based comparison of two Distributed Computing Infrastructures”, in 5th Workshop on Workflows in Support of Large-Scale Science (WORKS10), New-Orleans, LA, 2010.PDF icon works10-revision.pdf (345.92 KB)
  6. [MONT-09]J. Montagnat, Isnard, B., Glatard, T., Maheshwari, K., and Blay-Fornarino, M., “A data-driven workflow language for grids based on array programming principles”, in Workshop on Workflows in Support of Large-Scale Science(WORKS'09), 2009.
    http://rainbow.polytech.unice.fr/publis/montagnat-isnard-etal:2009.pdf
  7. [MAHE-09]K. Maheshwari, Glatard, T., Schaerer, J., Delhay, B., Camarasu-Pop, S., Clarysse, P., and Montagnat, J., “Towards Production-level Cardiac Image Analysis with Grids”, in HealthGrid'09, Berlin, 2009.PDF icon healthgrid09.pdf (813.4 KB)
  8. [LING-09]D. Lingrand, Montagnat, J., and Glatard, T., “Modeling user submission strategies on production grids”, in International Symposium on High Performance Distributed Computing (HPDC'09), Munchen, Germany, 2009.PDF icon lingrand-montagnat-etal_2009.pdf (374.77 KB)
  9. [GLAT-08c]T. Glatard and Montagnat, J., “Implementation of Turing machines with the Scufl data-flow language”, in 3rd International Workshop on Workflow Systems in e-Science (WSES'08), Lyon, France, 2008.
    http://rainbow.polytech.unice.fr/publis/glatard-montagnat:2008.pdf
  10. [GLAT-08b]T. Glatard, Montagnat, J., and Pennec, X., “A probabilistic model to analyse workflow performance on production grids”, in IEEE International Symposium on Cluster Computing and the Grid (CCGrid'08), Lyon, France, 2008, pp. 510–517.
    http://rainbow.polytech.unice.fr/publis/glatard-montagnat-etal:2008b.pdf
  11. [LING-08]D. Lingrand, Montagnat, J., and Glatard, T., “Estimating the execution context for refining submission strategies on production grids”, in Assessing Models of Networks and Distributed Computing Platforms (ASSESS / ModernBio) (CCGrid'08), Lyon, France, 2008, pp. 753–758.
    http://rainbow.polytech.unice.fr/publis/lingrand-montagnat-etal:2008.pdf
  12. [GLAT-08e]T. Glatard, Montagnat, J., and Pennec, X., “A framework for evaluating the impact of compression on registration algorithms without gold standard”, in International Conference on Image Processing (ICIP'08), San Diego, California, USA, 2008, pp. 2912-2915.
    http://staff.science.uva.nl/ glatard/docs/icip08.pdf
  13. [CAMA-08a]S. Camarasu-Pop, Benoit-Cattin, H., Montagnat, J., and Racoceanu, D., “Grids for Content-Based Medical Image Indexing and Retrieval”, in ICT4Health, Oncomedia, Manila, The Philippines, 2008.
  14. [GLAT-06a]T. Glatard, Pennec, X., and Montagnat, J., “Performance evaluation of grid-enabled registration algorithms using bronze-standards”, in Medical Image Computing and Computer-Assisted Intervention (MICCAI'06), Copenhagen, Denmark, 2006, pp. 152–160.
    http://www.i3s.unice.fr/ johan/publis/MICCAI06.pdf
  15. [GLAT-06f]T. Glatard, Montagnat, J., and Pennec, X., “Medical image registration algorithms assessment: Bronze Standard application enactment on grids using the MOTEUR workflow engine”, in HealthGrid'06, Valencia, Spain, 2006, pp. 93–103.
    http://www.i3s.unice.fr/ johan/publis/HealthGrid06b.pdf
  16. [GLAT-06e]T. Glatard, Montagnat, J., and Pennec, X., “Probabilistic and dynamic optimization of job partitioning on a grid infrastructure”, in 14th euromicro conference on Parallel, Distributed and network-based Processing (PDP06), Montbéliard-Sochaux, France, 2006, pp. 231–238.
    http://www.i3s.unice.fr/ johan/publis/PDP06.pdf
  17. [MONT-06]J. Montagnat, Glatard, T., and Lingrand, D., “Data composition patterns in service-based workflows”, in Workshop on Workflows in Support of Large-Scale Science (WORKS'06), Paris, France, 2006.
    http://rainbow.polytech.unice.fr/publis/montagnat-glatard-etal:2006.pdf
  18. [GLAT-06d]T. Glatard, Montagnat, J., and Pennec, X., “Efficient services composition for grid-enabled data-intensive applications”, in IEEE International Symposium on High Performance Distributed Computing (HPDC'06), Paris, France, 2006, pp. 333–334.
    http://www.i3s.unice.fr/ johan/publis/HPDC06.pdf
  19. [GLAT-06c]T. Glatard, Emsellem, D., and Montagnat, J., “Generic web service wrapper for efficient embedding of legacy codes in service-based workflows”, in Grid-Enabling Legacy Applications and Supporting End Users Workshop (GELA'06), Paris, France, 2006, pp. 44–53.
    http://www.i3s.unice.fr/ johan/publis/GELA06.pdf
  20. [GLAT-06b]T. Glatard, Montagnat, J., and Pennec, X., “An experimental comparison of Grid5000 clusters and the EGEE grid”, in Workshop on Experimental Grid testbeds for the assessment of large-scale distributed applications and tools (EXPGRID'06), Paris, France, 2006.
    http://www.i3s.unice.fr/ johan/publis/EXPGRID06.pdf
  21. [GLAT-05a]T. Glatard, Montagnat, J., and Pennec, X., “Grid-enabled workflows for data intensive medical applications”, in 18th IEEE International Symposium on Computer-Based Medical Systems (CBMS), Dublin, Ireland, 2005, pp. 537-542.
    http://www.i3s.unice.fr/ johan/publis/CBMS05.pdf
  22. [VARE-05]S. Varette, Georget, S., Montagnat, J., Roch, J. L., and Leprevost, F., “Distributed Authentication in GRID5000”, in Grid Computing and its Application to Data Analysis (GADA'05), Agia Napa, Chyprus, 2005.
  23. [PIER-05]J. M. Pierson, Seitz, L., Duque, H., and Montagnat, J., “MetaData for Efficient, Secure and Extensible Access to Data in a Medical Grid”, in Database and Expert System Applications (DEXA'04), Zaragoza, Spain, 2005, pp. 562-566.
  24. [GERM-05a]C. Germain, Breton, V., Clarysse, P., Gaudeau, Y., Glatard, T., Jeannot, E., Legré, Y., Loomis, C., Montagnat, J., Moureaux, J. M., Osorio, A., and Texier, R., “Grid-enabling medical image analysis”, in Biogrid'05, proceedings of the IEEE/ACM International Symposium on Cluster Computing and the Grid, Cardiff, UK, 2005.
    http://www.cse.uconn.edu/ huang/BioGrid-05/
  25. [MONT-04]J. Montagnat, Breton, V., and Magnin, I. E., “Partitionning medical image databases for content-based queries on a grid”, in Proc. of Healthgrid'04, Clermont-Ferrand, France, 2004.
  26. [HILL-04]D. Hill, Pennec, X., Burns, M., Parkin, M., Hajnal, J., Stefanescu, R., Rueckert, D., and Montagnat, J., “Intraoperable Medical Image Registration Grid Service”, in Proc. of HealthGrid'04, Clermont-Ferrand, France, 2004.
  27. [GLAT-04]T. Glatard, Montagnat, J., and Magnin, I. E., “Texture based medical image indexing and retrieval: application to cardiac imaging”, in Proceedings of ACM Multimedia 2004, workshop on Multimedia Information Retrieval (MIR), New York, NY, USA, 2004, pp. 135–142.
    http://www.i3s.unice.fr/ johan/publis/MIR04.pdf
  28. [BRET-04]V. Breton, Blanchet, C., Maigne, L., and Montagnat, J., “Grid technology for biomedical applications”, in VECPAR'04, Valencia, Spain, 2004.
  29. [QIU-04]B. Qiu, Clarysse, P., Montagnat, J., Janier, M., and Vray, D., “Comparison of 3D Deformable Models For in vivo Measurements of Mouse Embryo from 3D Ultrasound Images”, in IEEE International Ultrasonics Symposium, Montréal, Canada, 2004, pp. 748-751.
  30. [VICA-04]P. Vicat-Blanc, Montagnat, J., and Chanussot, F., “Flexible and Dynamic Control of Network QoS in Grid environments: the QoSINUS approach”, in Proceedings of Cluster'04, San Diego, USA, 2004.
  31. [BENO-03]H. Benoit-Cattin, Bellet, F., Montagnat, J., and Odet, C., “Magnetic Resonance Imaging (MRI) Simulation on a Grid Computing Architecture”, in Biogrid'03, proceedings of the IEEE CCGrid03, Tokyo, Japan, 2003, pp. 582-587.
  32. [CHAR-03]A. Charnoz, Lingrand, D., and Montagnat, J., “A LevelSet Based Method for Segmenting the Heart in 3D+T gated SPECT images”, in Functional Imaging and Modeling of the Heart (FIMH'03), Lyon, France, 2003, vol. 2674, pp. 50-59.
  33. [MONT-03c]J. Montagnat, Duque, H., Pierson, J. M., Breton, V., Brunie, L., and Magnin, I. E., “Medical Image Content-Based Queries using the Grid”, in HealthGrid'03, Lyon, France, 2003, pp. 138-147.
  34. [DUQU-03]H. Duque, Montagnat, J., Pierson, J. M., Brunie, L., and Magnin, I. E., “DM2: A Distributed Medical Data Manager for Grids”, in Biogrid'03, proceedings of the IEEE CCGrid03, Tokyo, Japan, 2003, pp. 606-611.
  35. [MONT-03b]J. Montagnat, Breton, V., and Magnin, I. E., “Using grid technologies to face medical image analysis challenges”, in Biogrid'03, proceedings of the IEEE CCGrid03, Tokyo, Japan, 2003, pp. 588-593.
  36. [MONT-03d]J. Montagnat, Dávila Serrano, E. E., and Magnin, I. E., “Efficient visualization of 3D medical scenes for remote interactive applications”, in ISPA'03, Roma, Italy, 2003.
  37. [FLOR-02]L. Flórez-Valencia, Montagnat, J., and Orkisz, M., “3D graphical models for vascular-stent pose simulation”, in Int Conf Comput Vision Graphics, Zakopane, Poland, 2002, pp. 259-266.
  38. [VRAY-02]D. Vray, Discher, A., Le Floc'h, J., Mai, W., Clarysse, P., Pham, Q. C., Montagnat, J., and Janier, M., “3D quantification of ultrasound images : application to mouse embryo imaging in vivo”, in IEEE International Ultrasonics Symposium (UFFC), Munich, Germany, 2002.
  39. [MONT-02]J. Montagnat, Dávila Serrano, E. E., and Magnin, I. E., “3D objects visualization for remote interactive medical applications”, in 3D Data Visualization, Processing, and Transmission (3DPVT'02), Padova, Italy, 2002, pp. 75-48.

Conference Proceedings

  1. [GESI-12]S. Gesing, Glatard, T., Krüger, J., Olabarriaga, S. D., Solomonides, T., Silverstein, C., Montagnat, J., Gaignard, A., and Krefting, D., “HealthGrid Applications and Technologies meet Science Gateways for Life Sciences, proceedings of HealthGrid 2012”, HealthGrid, vol. 175. 2012.
  2. [MAGN-03]I. E. Magnin, Montagnat, J., Clarysse, P., Nenonen, J., and Katila, T., “Proceedings of the Second International Workshop on Functional Imaging and Modeling of the Heart (FIMH'03), LNCS 2674, 300 pages”. Springer Verlag, Publ, Some City, Some Country, 2003.
  3. [KATI-01]T. Katila, Magnin, I. E., Clarysse, P., Montagnat, J., and Nenonen, J., “Proceedings of the First International Workshop on Functional Imaging and Modeling of the Heart (FIMH'01), LNCS 2432, 158 pages”, Lecture Notes in Computer Sciences, LNCS 2432. Springer Verlag, Publ., Some City, Some Country, 2001.

Book Chapter

  1. [GERM-09]C. Germain-Renaud, Breton, V., Clarysse, P., Delhay, B., Gaudeau, Y., Glatard, T., Jeannot, E., Legré, Y., Montagnat, J., Moureaux, J. M., Osorio, A., Pennec, X., Schaerer, J., and Texier, R., “Grid Analysis of Radiological Data”, in Handbook of Research on Computational Grid Technologies for Life Sciences, Biomedicine and Healthcare, M. Cannataro IGI, 2009.

Invited Conference

  1. [MAGN-06a]I. E. Magnin and Montagnat, J., “The grid and the biomedical community: achievements and open issues”, EGEE user Forum. Genève, Switzerland, 2006.
  2. [MAGN-06b]I. E. Magnin, Benoit-Cattin, H., and Montagnat, J., “Medical grids”, AIRS'06 Asia Information Retrieval Symposium. Singapore, Singapore, 2006.

Miscellaneous

  1. [GIBA-12]B. Gibaud, Forestier, G., Benoit-Cattin, H., Cervenansky, F., Clarysse, P., Friboulet, D., Gaignard, A., Hugonnard, P., Lartizien, C., Liebgott, H., Montagnat, J., Tabary, J., and Glatard, T., “Design of an ontology for the annotation of object models used for medical image simulation”. Lyon, 2012.
  2. [GLAT-09c]T. Glatard, Camarasu-Pop, S., Benoit-Cattin, H., Clarysse, P., Montagnat, J., Moscicki, J., Olabarriaga, S., and Sarrut, D., “Integrating pilot-jobs, workflows and virtual resource browser to foster medical image analysis on EGEE”. Catania, Italie, 2009.
  3. [LING-08a]D. Lingrand, Montagnat, J., and Glatard, T., “Estimation of latency on production grid over several weeks”. Oncomedia, Manila, Philippines, 2008.
    http://rainbow.polytech.unice.fr/publis/lingrand-montagnat-etal:2008a.pdf
  4. [BRET-03a]V. Breton, Medina, R., and Montagnat, J., “DataGrid, Prototype of a Biomedical Grid”. 2003.