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Journal Article

  1. [BITK-19]“Non-invasive quantification of macrophagic lung recruitment during experimental ventilation-induced lung injury”, Journal of Applied Physiology, vol. 127, pp. 546-558, 2019.
    https://www.physiology.org/doi/abs/10.1152/japplphysiol.00825.2018
  2. [ORKI-19]“Voxel-wise assessment of lung aeration changes on CT images using image registration: application to acute respiratory distress syndrome (ARDS)”, International Journal of Computer Assisted Radiology and Surgery, vol. 14, pp. 1945-1953, 2019.
    https://doi.org/10.1007/s11548-019-02064-3
  3. [MORA-17a]“A tree-matching algorithm: Application to airways in CT images of subjects with the acute respiratory distress syndrome”, Medical Image Analysis, vol. 35, pp. 101 - 115, 2017.
    http://www.sciencedirect.com/science/article/pii/S1361841516300986
  4. [MORA-17b]“Lung Segmentation by Cascade Registration”, IRBM, vol. 38, pp. 266-280, 2017.
    https://www.sciencedirect.com/science/article/abs/pii/S1959031817300726?via%3Dihub
  5. [ZULU-14a]M. A. Zuluaga, Hernández Hoyos, M., and Orkisz, M., “Feature selection based on empirical-risk function to detect lesions in vascular Computed Tomography images”, IRBM, vol. 35, pp. 244-254, 2014.
    http://www.sciencedirect.com/science/article/pii/S1959031814000827
  6. [RUDY-14]R. D. Rudyanto, Kerkstra, S., Rikxoort, E. M., Fetita, C., Brillet, P., Lefevre, C., Xue, W., Zhu, X., Liang, J., Öksüz, I., Ünay, D., Kadipasaoglu, K., San José Estépar, R., Ross, J. C., Washko, G. R., Prieto, J. C., Hernández Hoyos, M., Orkisz, M., Meine, H., Hüllebrand, M., Stöcker, C., Lopez Mir, F., Naranjo, V., Villanueva, E., Staring, M., Xiao, C., Stoel, B. C., Fabijanska, A., Smistad, E., Elster, A. C., Lindseth, F., Foruzan, A. H., Kiros, R., Popuri, K., Cobzas, D., Jimenez-Carretero, D., Santos, A., Ledesma-Carbayo, M. J., Helmberger, M., Urschler, M., Pienn, M., Bosboom, D. G. H., Campo, A., Prokop, M., Jong, P. A., Ortiz-de-Solorzano, C., Muñoz-Barrutia, A., and van Ginneken, B., “Comparing algorithms for automated vessel segmentation in computed tomography scans of the lung: The VESSEL12 study”, Medical Image Analysis, vol. 18, pp. 1217-1232, 2014.
    https://www.sciencedirect.com/science/article/abs/pii/S136184151400111X?via%3Dihub
  7. [RICH-14]J. C. Richard, Pouzot, C., Morales Pinzón, A., Torres González, J. S., Orkisz, M., Neyran, B., Hernández Hoyos, M., Lavenne, F., and Guérin, C., “Reliability of the nitrogen washout-washin technique to assess end-expiratory lung volume at variable PEEP and tidal volumes”, Intensive Care Medicine Experimental, vol. 2, 2014.
    https://icm-experimental.springeropen.com/articles/10.1186/2197-425X-2-10
  8. [MORA-14]A. Morales Pinzón, Orkisz, M., Rodríguez Useche, C. M., Torres González, J. S., Teillaud, S., Sánchez, J. A., and Hernández Hoyos, M., “A semi-automatic method to extract canal pathways in 3D micro-CT images of octocorals”, PLoS ONE, 2014.
    http://dx.plos.org/10.1371/journal.pone.0085557
  9. [ORKI-14]M. Orkisz, Hernández Hoyos, M., Pérez Romanello, V., Pérez Romanello, C., Prieto, J. C., and Revol-Muller, C., “Segmentation of the pulmonary vascular trees in 3D CT images using variational region-growing”, IRBM, vol. 35, pp. 11-19, 2014.
    https://www.sciencedirect.com/science/article/abs/pii/S1959031813001371?via%3Dihub
  10. [HERN-12b]M. Hernández Hoyos, Dávila Serrano, E. E., Correa Agudelo, E. M., Torres González, J. S., Corredor Jerez, R. A., Gutiérrez Ossa, F. A., Flórez-Valencia, L., Mouton, C., and Orkisz, M., “CreaTools: una plataforma para desarrollo de software de procesamiento de imágenes médicas. Aplicación a la segmentación de arterias coronarias y a la detección automática de lesiones en imágenes de angioTAC”, Revista Colombiana de Radiología, vol. 23, pp. 3521-3528, 2012.
  11. [HAME-11]K. Hameeteman, Zuluaga, M. A., Freiman, M., Joskowicz, L., Cuisinaire, O., Flórez-Valencia, L., Gülsün, M. A., Krissian, K., Mille, J., Wong, W. C. K., Orkisz, M., Tek, H., Hernández Hoyos, M., Benmansour, F., Chung, A. C. S., Rozie, S., van Gils, M., van den Borne, L., Sosna, J., Berman, P., Cohen, N., Douek, P., Sánchez, I., Aissat, M., Schaap, M., Metz, C. T., van der Lugt, A., Krestin, G., Niessen, W. J., and van Walsum, T., “Evaluation Framework for Carotid Bifurcation Lumen Segmentation and Stenosis Grading”, Med Image Anal, vol. 15, pp. 477-488, 2011.
  12. [ZULU-11a]M. A. Zuluaga, Magnin, I. E., Hernández Hoyos, M., Delgado Leyton, E. J. F., Lozano, F., and Orkisz, M., “Automatic detection of abnormal vascular cross-sections based on Density Level Detection and Support Vector Machines”, Int J Comput Assist Radiol Surg, vol. 6, pp. 163-174, 2011.
  13. [ZULU-10d]M. A. Zuluaga, Orkisz, M., Delgado Leyton, E. J. F., Doré, V., Morales Pinzón, A., and Hernández Hoyos, M., “Adaptación del algoritmo MARACAS para la segmentación de la bifurcación de la arteria carótida y cuantificación de estenosis en imágenes TAC”, Actas Biol Colombianas, vol. 15, pp. 195 - 210, 2010.
    /site7/sites/www.creatis.insa-lyon.fr/files/Zuluaga_ABC_2010.pdf
  14. [SCHA-09]M. Schaap, Metz, C. T., van Walsum, T., van der Giessen, A. G., Weustink, A. C., Mollet, N. R., Bauer, C., Bogunović, H., Castro, C., Deng, X., Dikici, E., O'Donnell, T., Frenay, M., Friman, O., Hernández Hoyos, M., Kitslaar, P. H., Krissian, K., Kühnel, C., Luengo-Oroz, M. A., Orkisz, M., Smedby, Ö., Styner, M., Szymczak, A., Tek, H., Wang, C., Warfield, S. K., Zhang, Y., Zambal, S., Krestin, G. P., and Niessen, W. J., “Standardized evaluation methodology and reference database for evaluating coronary artery centerline extraction algorithms”, Med Image Anal, vol. 13, pp. 701–714, 2009.
  15. [ZULU-09e]M. A. Zuluaga, Orkisz, M., and Hernández Hoyos, M., “Mejoramiento de la segmentación arterial coronaria a traves del modelamiento del volumen parcial en imágenes TAC”, Revista Colombiana de Radiología, vol. 20, pp. 2702-2707, 2009.
    http://www.acronline.org/RevistaColombianadeRadiolog%C3%ADa/N%C3%BAmerosAnteriores/A%C3%B1o2009/tabid/723/Default.aspx
  16. [ORKI-08]M. Orkisz, Flórez-Valencia, L., and Hernández Hoyos, M., “Models, algorithms and applications in vascular image segmentation”, Mach Graph Vision, vol. 17, pp. 5-33, 2008.
    http://www.creatis.insa-lyon.fr/~orkisz/articles/Orkisz_MGV_2008.pdf
  17. [CARR-07]J. F. Carrillo, Hernández Hoyos, M., Dávila Serrano, E. E., and Orkisz, M., “Recursive tracking of vascular tree axes in 3D medical images”, Int J Comput Assist Radiol Surg, vol. 1, pp. 331-339, 2007.
  18. [CANT-07c]D. Cantor Rivera, Orkisz, M., Arias, J. A., Uriza, L. F., and Hernández Hoyos, M., “Modelamiento en 3D de patologías vasculares a partir de imágenes de resonancia magnética sustraídas”, Revista Colombiana de Radiología, vol. 18, pp. 2225-2232, 2007.
    /site7/sites/www.creatis.insa-lyon.fr/files/Cantor_RCR_2007.pdf
  19. [HERN-06a]M. Hernández Hoyos, Orlowski, P., Piatkowska-Janko, E., Bogorodzki, P., and Orkisz, M., “Vascular centreline extraction in 3D MR angiograms applied to select acquisition plane for blood flow measurement by phase contrast MRI”, Int J Comput Assist Radiol Surg, vol. 1, pp. 51-61, 2006.
  20. [CARR-06d]J. F. Carrillo, Hernández Hoyos, M., Dávila Serrano, E. E., and Orkisz, M., “Segmentación y visualización arterial en ARM y TC”, Revista Colombiana de Radiología, vol. 17, pp. 2028-2036, 2006.
    /site7/sites/www.creatis.insa-lyon.fr/files/Carrillo_RCR_2006.pdf
  21. [HERN-06b]M. Hernández Hoyos, Serfaty, J. M., Maghiar, A., Mansard, C., Orkisz, M., Magnin, I. E., and Douek, P., “Evaluation of semi-automatic arterial stenosis quantification”, Int J Comput Assist Radiol Surg, vol. 1, pp. 167-175, 2006.
  22. [HERN-05]M. Hernández Hoyos, Orkisz, M., Douek, P., and Magnin, I. E., “Assessment of carotid artery stenoses in 3D contrast-enhanced magnetic resonance angiography, based on improved generation of the centerline”, Mach Graph Vision, vol. 14, pp. 349-378, 2005.
    http://www.creatis.insa-lyon.fr/~orkisz/articles/hernandez_MGV_2005.pdf
  23. [MARC-02]B. Marchand, Douek, P., Robert, P., Corot, C., Roux, J. P., Adeleine, P., Hernández Hoyos, M., Crémillieux, Y., Orkisz, M., and Canet-Soulas, E., “Standardized MR protocol for the evaluation of MRA sequences and/or contrast agents effects in high-degree arterial stenosis analysis”, Magma, vol. 14, pp. 259–267, 2002.
  24. [HERN-02a]M. Hernández Hoyos, Orkisz, M., Puech, P., Mansard, C., Douek, P., and Magnin, I. E., “Computer assisted analysis of 3D MRA images”, Radiographics, vol. 22, pp. 421-436, 2002.
    http://radiographics.rsna.org/content/22/2/421.full
  25. [ORKI-01a]M. Orkisz and Hernández Hoyos, M., “Models for 3D vascular image analysis”, J Med Inform Technol, vol. 2, pp. 13-22, 2001.
    /site7/sites/www.creatis.insa-lyon.fr/files/Orkisz_JMIT_2001.pdf
  26. [MARC-01a]B. Marchand, Hernández Hoyos, M., Orkisz, M., and Douek, P., “Diagnostic des sténoses de l'artère rénale en Angiographie par Résonance Magnétique et appréciation du degré de sténose”, J Mal Vasc, vol. 25, pp. 312-320, 2001.
  27. [ORKI-00a]M. Orkisz, Hernández Hoyos, M., Douek, P., and Magnin, I. E., “Advances of blood vessel morphology analysis in 3D magnetic resonance images”, Mach Graph Vision, vol. 9, pp. 463–471, 2000.
    https://www.researchgate.net/publication/228917735_Advances_of_blood_vessel_morphology_analysis_in_3D_magnetic_resonance_images

Conference Paper

  1. [RICH-19]“Transpulmonary pressures and computed tomography in experimental ARDS”, in 47ème congrès annuel de la Société de Réanimation de Langue Française, Paris, France, 2019, p. Annals of Intensive Care 2019, 9 (Suppl 1):CO-14.
  2. [LIDA-17]“Airway-tree segmentation in subjects with acute respiratory distress syndrome”, in Scandinavian Conference on Image Analysis, Tromsø, Norway, 2017, pp. 76-87.
  3. [MORA-16b]A. Morales Pinzón, Gómez Betancur, D. A., Solórzano Vargas, L. E., Richard, J. C., Orkisz, M., and Hernández Hoyos, M., “A novel hybrid registration method: Application to lung segmentation in CT images of subjects with ARDS”, in Octavo Seminario de Ingeniería Biomédica, Bogotá, Colombia, 2016.
  4. [SOLO-16]L. E. Solórzano Vargas, Morales Pinzón, A., Richard, J. C., Orkisz, M., and Hernández Hoyos, M., “Localized visualization and quantification of pulmonary parenchyma properties in CT scans in presence of Acute Respiratory Distress Syndrome (ARDS)”, in Octavo Seminario de Ingeniería Biomédica, Bogotá, Colombia, 2016.
  5. [GOME-16]“Airway segmentation, skeletonization, and tree matching to improve registration of 3D CT images with large opacities in the lungs”, in International Conference on Computer Vision and Graphics, Warsaw, Poland, 2016, pp. 395-407.
  6. [FLOR-15]L. Flórez-Valencia, Morales Pinzón, A., Richard, J. C., Hernández Hoyos, M., and Orkisz, M., “Simultaneous skeletonization and graph description of airway trees in 3D CT images”, in GRETSI, Lyon, France, 2015.
  7. [MORA-14a]A. Morales Pinzón, Hernández Hoyos, M., Richard, J. C., Torres González, J. S., and Orkisz, M., “Quantification of aeration in 3D CT images from induced acute respiratory distress syndrome”, in Seminario Internacional de Ingeniería Biomédica, Bogotá, Colombie, 2014.
  8. [MORA-14b]A. Morales Pinzón, Orkisz, M., Richard, J. C., and Hernández Hoyos, M., “Lung segmentation in 3D CT images from induced Acute Respiratory Distress Syndrome”, in IEEE International Symposium on Biomedical Imaging - ISBI, Beijing, China, 2014.
  9. [MORA-14c]A. Morales Pinzón, Orkisz, M., Richard, J. C., Guérin, C., and Hernández Hoyos, M., “Lung segmentation in 3D CT Images of Induced Acute Respiratory Distress Syndrome”, in MICCAI NCIGT and NIH Image Guided Therapy Workshop, Boston, USA, 2014, p. 51.
  10. [CORR-14b]E. M. Correa Agudelo, Flórez-Valencia, L., Orkisz, M., Mouton, C., Dávila Serrano, E. E., and Hernández Hoyos, M., “A modular workflow architecture for coronary centerline extraction in Computed Tomography Angiography data”, in International Conference on Computer Vision and Graphics, Warsaw, Poland, 2014, vol. LNCS 8671, pp. 155-162.
  11. [CORR-14a]E. M. Correa Agudelo, Hernández Hoyos, M., Flórez-Valencia, L., and Orkisz, M., “An interactive coronary centerline extraction framework for CTA image analysis”, in Seminario Internacional de Ingeniería Biomédica, Bogotá, Colombie, 2014.
  12. [MOUT-13]C. Mouton, Dávila Serrano, E. E., Cervenansky, F., Camarasu-Pop, S., Correa, E., Flórez-Valencia, L., Hernández Hoyos, M., and Orkisz, M., “CreaTools: A development framework for medical image processing software ; an application to segmentation, anomaly detection and quantification for coronary arteries”, in European BioImage Analysis Symposium 2013, IRB Barcelona, Spain, 2013.PDF icon 2013_10_Barcelona_Abstract.pdf (42.41 KB)
    http://eubias2013.irbbarcelona.org/meeting-report
  13. [DAVI-12b]E. E. Dávila Serrano, Guigues, L., Cervenansky, F., Camarasu-Pop, S., Riveros Reyes, J. G., Flórez-Valencia, L., Hernández Hoyos, M., and Orkisz, M., “CreaTools: a framework to develop medical image processing software. Application to simulate pipeline stent deployment in intracranial vessels with aneurysms”, in Int. Conf. Comput. Vision. Graphics., Warsaw, Poland, 2012, vol. LNCS 7594, pp. 55-62.
  14. [FLOR-12b]L. Flórez-Valencia, Orkisz, M., Corredor Jerez, R. A., Torres González, J. S., Correa Agudelo, E. M., Mouton, C., and Hernández Hoyos, M., “Coronary artery segmentation and stenosis quantication in CT images with use of a right generalized cylinder model”, in MICCAI Workshop 3D Cardiovascular Imaging Segmentation Challenge, Nice, France, 2012, p. 8 in electronic proc.
    /site7/sites/www.creatis.insa-lyon.fr/files/miccai2012_coronary_challenge_creandpuj.pdf
  15. [HERN-12a]M. Hernández Hoyos, Dávila Serrano, E. E., Correa Agudelo, E. M., Torres González, J. S., Corredor Jerez, R. A., Gutiérrez Ossa, F. A., Flórez-Valencia, L., Mouton, C., and Orkisz, M., “CreaTools: una plataforma para desarrollo de software de procesamiento de imágenes médicas. Aplicación a la segmentación de arterias coronarias y a la detección automática de lesiones en imágenes de angioTAC”, in Congreso Colombiano de Radiología, Cartagena de Indias, Colombie, 2012.
  16. [PRIE-12c]J. C. Prieto, Revol-Muller, C., Odet, C., Orkisz, M., and Hernández Hoyos, M., “CreaLungs: a variational region growing method to segment pulmonary vascular trees”, in ISBI VESSEL12 Challenge, Barcelona, Spain, 2012.
    /site7/sites/www.creatis.insa-lyon.fr/files/AlgorithmDescription.pdf
  17. [CORR-12]R. A. Corredor Jerez, Zuluaga, M. A., Lozano, F., Orkisz, M., and Hernández Hoyos, M., “Segmentación de lumen arterial mediante Support Vector Machines en imágenes de TAC”, in Seminario de Ingeniería Biomédica – SIB, Bogotá, Colombia, 2012, pp. 9-10.
    http://sib2012.uniandes.edu.co/wp-content/images/MEMORIAS%20SIB%202012.pdf
  18. [DAVI-12c]E. E. Dávila Serrano, Guigues, L., Roux, J. P., Cervenansky, F., Mouton, C., Camarasu-Pop, S., Flórez-Valencia, L., Hernández Hoyos, M., and Orkisz, M., “CreaTools: applications and development framework for medical image-processing software”, in Libre Software Meeting, Geneva, 2012.
    http://schedule2012.rmll.info/CreaTools-applications-and-development-framework-for-medical-image-processing-software?lang=en
  19. [GUTI-12]F. A. Gutiérrez Ossa, Corredor Jerez, R. A., Zuluaga, M. A., Orkisz, M., and Hernández Hoyos, M., “Aprendizaje de máquinas basado en árboles aleatorios para la segmentación automática de la arteria carótida en imágenes de TAC”, in Seminario de Ingeniería Biomédica – SIB, Bogotá, Colombia, 2012, pp. 14-15.
    http://sib2012.uniandes.edu.co/wp-content/images/MEMORIAS%20SIB%202012.pdf
  20. [ORTE-12]D. C. Ortega, Orkisz, M., Lozano, F., and Hernández Hoyos, M., “Uso de Support Vector Machines para la segmentación de costillas en imágenes de TAC”, in Seminario de Ingeniería Biomédica – SIB, Bogotá, Colombia, 2012, p. 11.
    http://sib2012.uniandes.edu.co/wp-content/images/MEMORIAS%20SIB%202012.pdf
  21. [ZULU-12]M. A. Zuluaga, Hernández Hoyos, M., Dávila, J. C., Uriza Carrasco, L. F., and Orkisz, M., “A fast lesion registration to assist coronary heart disease diagnosis in CTA images”, in Int. Conf. Comput. Vision Graph., Warsaw, Poland, 2012, vol. LNCS 7594, pp. 710-717.
  22. [DAVI-12a]E. E. Dávila Serrano, Guigues, L., Roux, J. P., Cervenansky, F., Camarasu-Pop, S., Flórez-Valencia, L., Hernández Hoyos, M., and Orkisz, M., “CreaTools: applications and development framework for medical image-processing software”, in ISBI Workshop on Open Source Medical Image Analysis Software, Barcelona, Spain, 2012.
    /site7/sites/www.creatis.insa-lyon.fr/files/CreaTools_ISBI_workshop_2012_0.pdf
  23. [PRIE-12e]J. C. Prieto, Pérez Romanello, C., Pérez Romanello, V., Revol-Muller, C., Odet, C., Orkisz, M., and Hernández Hoyos, M., “Segmentación del árbol vascular pulmonar”, in XXXVIII Conferencia Latinoamericana en Informática (CLEI), Medellín, Colombia, 2012, pp. 1-7.
  24. [ZULU-11b]M. A. Zuluaga, Hush, D., Delgado Leyton, E. J. F., Hernández Hoyos, M., and Orkisz, M., “Learning from Only Positive and Unlabeled Data to Detect Lesions in Vascular CT Images”, in Medical Image Computing and Computer Assisted Interventions - MICCAI , Toronto, Canada, 2011, vol. LNCS 6893, Part III, pp. 9-16.
  25. [GUTI-11]F. A. Gutiérrez Ossa, Ortega, D. C., Orkisz, M., Uriza, L. F., and Hernández Hoyos, M., “Automatic segmentation of pulmonary arterial tree in Computed Tomography images”, in Sexto Congreso Colombiano de Computación (6CCC), Manizales, Colombia, 2011, p. 6 in electronic proc.
  26. [ZULU-10c]M. A. Zuluaga, Delgado Leyton, E. J. F., Hernández Hoyos, M., and Orkisz, M., “Can the coronary artery centerline extraction in computed tomography images be improved by use of a partial volume model?”, in Int Conf Comput Vision Graphics, Warsaw, Poland, 2010, vol. LNCS 6375, pp. 385-392.
  27. [MORA-10]A. Morales Pinzón, Orkisz, M., Teillaud, S., Sánchez, J. A., and Hernández Hoyos, M., “Extracción semi-automática de ejes de canales de corales”, in Sexto Seminario Internacional de Procesamiento de y Análisis de Imágenes Médicas, Bogotá, Colombia, 2010, p. 10 pages in electronic proceedings.
    /site7/sites/www.creatis.insa-lyon.fr/files/Morales_SIPAIM_2010.pdf
  28. [ZULU-10b]M. A. Zuluaga, Orkisz, M., Hernández Hoyos, M., Lozano Martínez, F., and Magnin, I. E., “Towards vascular abnormality detection: an SVM approach”, in 24rth CARS - Comput Assisted Radiol Surg, Geneva, Switzerland, 2010, vol. 5-suppl.1, pp. S355-6 (abstract).
  29. [ZULU-10e]M. A. Zuluaga, Delgado Leyton, E. J. F., Hernández Hoyos, M., and Orkisz, M., “Feature selection for SVM-based vascular anomaly detection”, in MICCAI Workshop on Medical Computer Vision, Beijing, China, 2010, vol. LNCS 6533, pp. 141-152.
  30. [ZULU-09a]M. A. Zuluaga, Hernández Hoyos, M., and Orkisz, M., “Evaluation of partial volume effects in computer tomography for the improvement of coronary artery segmentation”, in 23rd CARS - Comput Assisted Radiol Surg, Berlin, Germany, 2009, vol. 4-suppl.1, pp. S40-1 (abstract).
  31. [ZULU-09d]M. A. Zuluaga, Hernández Hoyos, M., and Orkisz, M., “Evaluación del efecto de volumen parcial en imágenes TAC para el mejoramiento de la segmentación arterial coronaria”, in Quinto Seminario de Ingeniería Biomédica y Quinto Seminario Internacional de Procesamiento de y Análisis de Imágenes Médicas, Bogota, Colombia, 2009, p. 4 in electronic proc.
  32. [ZULU-09b]M. A. Zuluaga, Orkisz, M., Delgado Leyton, E. J. F., Doré, V., Morales Pinzón, A., and Hernández Hoyos, M., “Adaptations of MARACAS algorithm to the segmentation of the carotid bifurcation and stenosis quantification in CTA images”, in MICCAI Workshop - 3D Segmentation in the Clinic: A Grand Challenge III, London, GB, 2009, p. 7 on-line.
    http://hdl.handle.net/10380/3102
  33. [ZULU-09c]M. A. Zuluaga, Orkisz, M., Delgado Leyton, E. J. F., Doré, V., Morales Pinzón, A., and Hernández Hoyos, M., “Adaptación del algoritmo MARACAS para la segmentación de la bifurcación de la arteria carótida y cuantificación de estenosis en imágenes TAC”, in Quinto Seminario de Ingeniería Biomédica y Quinto Seminario Internacional de Procesamiento de y Análisis de Imágenes Médicas, Bogota, Colombia, 2009, p. 5 in electronic proc.
  34. [ZULU-08]M. A. Zuluaga, Acosta, O., Bourgeat, P., Salvado, O., Hernández Hoyos, M., and Ourselin, S., “Cortical Thickness Measurement from Magnetic Resonance Images Using Partial Volume Estimation”, in SPIE: Medical Imaging, San Diego, 2008, p. 69140J.
  35. [HERN-08]M. Hernández Hoyos, Zuluaga, M. A., Lozano, M., Prieto, J. C., Douek, P., Magnin, I. E., and Orkisz, M., “Coronary centerline tracking in CT images with use of an elastic model and image moments”, in MICCAI Workshop - Grand Challenge Coronary Artery Tracking, New York City, USA, 2008, p. 8 on-line: http://hdl.handle.net/10380/1401.
    http://hdl.handle.net/10380/1401
  36. [ARDI-08]N. Ardila, Hernández Hoyos, M., Teillaud, S., Orkisz, M., Dávila Serrano, E. E., Beuf, O., Adrien, J., Martinez, F., Rey, C., and Sanchez, J. A., “Estudio no destructivo de los canales internos de octocorales por medio del análisis de imágenes biológicas y médicas”, in XII Seminario Nacional de Ciencia y Tecnología del Mar, Santa Marta, Colombia, 2008, vol. 1, p. 155.
  37. [CANT-07b]D. Cantor Rivera, Orkisz, M., Uriza, L. F., and Hernández Hoyos, M., “Generación de modelos arteriales tridimensionales a partir de imágenes de resonancia magnética (IRM)”, in XXXII Congreso Colombiano de Radiología, Cartagena de Indias, Colombia, 2007.
  38. [CANT-07a]D. Cantor Rivera, Orkisz, M., and Hernández Hoyos, M., “Generación de modelos arteriales tridimensionales a partir de imágenes de resonancia magnética (IRM)”, in XXXIII Conferencia Latinoamericana de Informática (CLEI), San José, Costa Rica, 2007.
  39. [ZULU-07a]M. A. Zuluaga, Dávila Serrano, E. E., Uriza, L. F., and Hernández Hoyos, M., “Carotid artery segmentation and characterization in 3D computed tomography (CT) images”, in 21st CARS - Comput Assisted Radiol Surg, Berlin, Germany, 2007, vol. 2, pp. S72 – S74.
  40. [FLOR-07a]L. Flórez-Valencia, Baltaxe Milwer, M., Hernández Hoyos, M., Vincent, F., Douek, P., Magnin, I. E., and Orkisz, M., “Fast marching level-sets for the extraction of vascular cross-sectional contours in CT angiography images”, in 21st CARS - Comput Assist Radiol Surg, Berlin, Germany, 2007, vol. 2-suppl.1, pp. S449-S450 (abstract).
  41. [BALT-07]M. Baltaxe Milwer, Flórez-Valencia, L., Hernández Hoyos, M., Magnin, I. E., and Orkisz, M., “Fast marching contours for the segmentation of vessel lumen in CTA cross-sections”, in Conf Proc IEEE Eng Med Biol Soc, Lyon, France, 2007, pp. 791-794.
  42. [CANT-07d]D. Cantor Rivera, Orkisz, M., Uriza Carrasco, L. F., and Hernández Hoyos, M., “Generación de modelos vasculares específicos al paciente a partir de IRM 3D usando el algoritmo de fast-marching”, in Cuarto Seminario de Ingeniería Biomédica y Quinto Seminario Internacional de Procesamiento de y Análisis de Imágenes Médicas, Bogota, Colombia, 2007, p. 2 in electronic proc.
  43. [CARR-06b]J. F. Carrillo, Dávila Serrano, E. E., Hernández Hoyos, M., and Orkisz, M., “Vascular tree extraction from 3D images”, in 20th CARS - Computer Assisted Radiology and Surgery, Osaka, Japan, 2006, p. 462 (abstract).
  44. [CARR-06c]J. F. Carrillo, Hernández Hoyos, M., Dávila Serrano, E. E., and Orkisz, M., “Segmentación y visualización arterial en ARM y TAC”, in XXXI Congreso Colombiano de Radiología, Cartagena, Colombia, 2006, pp. 21-22 (abstract).
  45. [CARR-06a]J. F. Carrillo, Hernández Hoyos, M., and Orkisz, M., “Automatic vascular tree segmentation”, in XXXII Conferencia Latinoamericana de Informática CLEI, Santiago de Chile, Chile, 2006, p. 174 (abstract; 8 p. full paper on CD).
  46. [HERN-05b]M. Hernández Hoyos, Orlowski, P., Piatkowska-Janko, E., Bogorodzki, P., and Orkisz, M., “Vascular centreline extraction in 3D MR angiograms to optimise acquisition plane for blood flow measurement by phase contrast MRI”, in 19th CARS - Comput Assisted Radiol Surg, Berlin, Germany, 2005, Int Congress Series ., vol. 1281, pp. 345-350.
  47. [HERN-05a]M. Hernández Hoyos, Orlowski, P., Piatkowska-Janko, E., Bogorodzki, P., and Orkisz, M., “Optimisation of acquisition plane selection for blood flow measurement by phase contrast MRI, based on vascular centreline extraction in 3D MR angiograms”, in Forum de Recherche en Génie Biologique et Médical, Nancy, France, 2005, pp. 86-87.
  48. [CARR-05]J. F. Carrillo, Orkisz, M., and Hernández Hoyos, M., “Extraction of 3D vascular tree skeletons based on the analysis of connected components evolution”, in 11th Int. IAPR Conf. Computer Analysis of Images and Patterns (CAIP 2005), Versailles, France, 2005, vol. 3691, pp. 604-611.
  49. [ORKI-02c]M. Orkisz and Hernández Hoyos, M., “Suivi de vaisseaux sanguins dans des images 3D à l'aide d'un modèle de base de moments”, in Mathématiques et Imagerie, Journée 'Application à la modélisation et l'imagerie en Cardio-Vasculaire', Lyon, France, 2002.
  50. [HERN-02b]M. Hernández Hoyos, Orkisz, M., Magnin, I. E., and Douek, P., “Quantification de la sténose artérielle dans des images ARM 3D fondée sur l'extraction automatique de l'axe central du vaisseau”, in Journées Françaises de Radiologie, Paris, France, 2002, vol. Abstr, p. 1423.
  51. [HERN-02c]M. Hernández Hoyos, Orkisz, M., Magnin, I. E., and Douek, P., “Automated generation of vessel centerlines and volumetric assessment of stenoses from MRA images”, in XIII Int. Workshop on MRA, Essen, Germany, 2002, vol. Abstr, p. 140.
  52. [HERN-01]M. Hernández Hoyos, Orkisz, M., Mansard, C., Anwander, A., Neyran, B., Roux, J. P., Boix, E., Magnin, I. E., and Douek, P., “MARACAS (MAgnetic Resonance Angiography Computer ASsisted Analysis) : an interactive software for visualisation and analysis of blood vessels in 3D MRA providing automatic quantification of arterial stenosis”, in XII Int. Workshop on MRA, Lyon, France, 2001, vol. 12, p. 47.
  53. [MANS-01b]C. Mansard, Hernández Hoyos, M., Orkisz, M., Puech, P., Chaabane, L., Serfaty, J. M., Magnin, I. E., and Douek, P., “Automatic image segmentation and stenosis quantification applied to MRA and to High Resolution MR Images”, in 2nd Int Workshop on Coronary MR and CT angiography, Chicago, USA, 2001.
  54. [MANS-01c]C. Mansard, Hernández Hoyos, M., Orkisz, M., Puech, P., Chaabane, L., Serfaty, J. M., Magnin, I. E., and Douek, P., “Automatic image segmentation and stenosis quantification applied to MRA and to high resolution MR image”, in Proc of XIII int Workshop on MRA, Madison, WI, USA, 2001.
  55. [MARC-01b]B. Marchand, Douek, P., Robert, P., Corot, C., Roux, J. P., Adeleine, P., Hernández Hoyos, M., Crémillieux, Y., Orkisz, M., and Canet, E., “Value of MRA sequences and contrast agents for the evaluation of high-degree stenosis : a phantom study”, in International Society of Magnetic Resonance in Medicine Scientific Meeting, Glasgow, UK, 2001.
  56. [ORKI-01c]M. Orkisz and Hernández Hoyos, M., “Models for 3D Vascular Image Analysis”, in Computer Graphics, Image Processing and Recognition, Warsaw, Poland, 2001.
  57. [HERN-00b]M. Hernández Hoyos, Orkisz, M., Roux, J. P., Magnin, I. E., and Douek, P., “MAgnetic Resonance Angiography Computer ASisted analysis: logiciel de visualisation et de traitement d'image ARM 3D”, in Journées Françaises de Radiologie, Paris, France, 2000, vol. 81, p. 1524.
  58. [HERN-00a]M. Hernández Hoyos, Orkisz, M., Roux, J. P., Magnin, I. E., and Douek, P., “MAgnetic Resonance Angiography Computer ASisted analysis : an interactive software for visualization and analysis of blood vessels 3D MRA automatic quantification of the arterial stenosis”, in RSNA 86th Annual Meeting, Chicago, Illinois, USA, 2000, pp. 700-24.
  59. [HERN-00c]M. Hernández Hoyos, Anwander, A., Orkisz, M., Roux, J. P., Douek, P., and Magnin, I. E., “A deformable vessel model with single point initialization for segmentation, quantification and visualization of blood vessels in 3D MRA”, in MICCAI, Pittsburgh, USA, 2000, vol. 13, pp. 735-745.
  60. [HERN-99]M. Hernández Hoyos, Orkisz, M., Roux, J. P., and Douek, P., “Inertia-based vessel axis extraction and stenosis quantification in 3D MRA images”, in Computer Assisted Radiology and Surgery (CARS'99), Paris, France, 1999, pp. 189-193.

Book Chapter

  1. [DOUE-05x]P. Douek, Hernández Hoyos, M., and Orkisz, M., “Image Processing in Contrast-Enhanced MR Angiography”, in Magnetic Resonance Angiography, G. Schneider, Prince, M. R., Meaney, J. F. M., and Ho, V. B. Milan, Italy: Springer, 2005, pp. 55-64.
  2. [ORKI-04]M. Orkisz and Hernández Hoyos, M., “Podstawy technik segmentacji stosowanych w przetwarzaniu obrazow 3D naczyn krwionosnych”, in Polska Akademia Nauk Biocybernetyka i Inzynieria Biomedyczna 2000, Obrazowanie biomedyczne, vol. 8, M. Nalecz, Chmielewski, L., Kulikowski, J. M., and Nowakowski, A. Warszawa, Poland: Akademicka Oficyna Wydawnicza EXIT, Publ., 2004, pp. 351–372.
  3. [ORKI-02d]M. Orkisz and Hernández Hoyos, M., “Développement récent dans le traitement d'images : principes des techniques de segmentation”, in Angiographie par Résonance Magnétique, P. Douek, Laissy, J. P., Levy, C., and Trillaud, H. Masson, Publ., 2002, pp. 62–73.

Invited Conference

  1. [ORKI-15]M. Orkisz, Hernández Hoyos, M., and Flórez-Valencia, L., “Angiographic image processing to detect and quantify arterial lesions”. GdR ISIS et STIC Santé, ANR VIVABRAIN, Paris 23-25 June 2015, 2015.
    http://www.math-info.univ-paris5.fr/~lomn/Workshop/pdf25June/Orkisz.pdf
  2. [ORKI-02b]M. Orkisz and Hernández Hoyos, M., “From inertia matrix to the analysis of vascular pathologies”, Int Conf Computer Vision and Graphics. Zakopane, Poland, pp. 6-15, 2002.
  3. [ORKI-01f]M. Orkisz and Hernández Hoyos, M., “Models for 3D Vascular Image Analysis”, Computer Graphics, Image Processing and Recognition. Warsaw, Poland, 2001.
  4. [ORKI-01b]M. Orkisz and Hernández Hoyos, M., “Models for 3D vascular image analysis”, Med. Informatics and Technologies, vol. 2. Jaszowiec, Poland, pp. IP13-IP22, 2001.
  5. [ORKI-00b]M. Orkisz, Hernández Hoyos, M., Magnin, I. E., and Douek, P., “Advances in image processing techniques applied to 3D MRA images enhancement, segmentation and quantification - A survey and contributions”, XII Int. Workshop on MRA, vol. 12. Lyon, France, p. 44, 2000.
  6. [ORKI-99b]M. Orkisz, Hernández Hoyos, M., and Douek, P., “Automatic vessel axis extraction and equivalent diameter estimation from 3D MRA data”, XI Int. Workshop on MRA, vol. 41. Lund, Sweden, p. 63, 1999.
  7. [ORKI-98d]M. Orkisz and Hernández Hoyos, M., “Développements récents dans le traitement d'images : principes des techniques de segmentation d'images vasculaires 3D”, 2-èmes Journées du Groupe de Recherche et de Réflexion en Angiographie par Résonance Magnétique. Paris, France, pp. 94-103, 1998.

Thesis

  1. [MORA-16]A. Morales Pinzón, “Lung segmentation and airway tree matching : Application to aeration quantification in CT images of subjects with ARDS”, Université Claude Bernard Lyon 1; Universidad de los Andes, Lyon, Bogotá, 2016.
    Jury: Anna Fabijanska, Łódz University of Technology, Rapporteur Isabelle Bloch, Telecom ParisTech, Rapporteur Fraçoise Prêteux, École des Ponts ParisTech Examinateur Jean-Christophe Richard, Université Lyon 1, Hôpital de la Croix Rousse, Examinateur José Tiberio Hernández, Universidad de los Andes, Examinateur Leonardo Flórez Valencia, Pontificia Universidad Javeriana, Examinateur Maciej Orkisz, Université Lyon 1, Directeur de thèse Marcela Hernández Hoyos, Universidad de los Andes, Directeur de thèse
    PDF icon Alfredo MORALES PINZON.pdf (20.9 MB)
  2. [ZULU-11d]M. A. Zuluaga, “Methods for the automation of vascular lesions detection in computed tomography images”, Université Claude Bernard Lyon 1, Lyon, 2011.
    Bloch I. (rap.), Hernández J.T. (Pdt), Hernández Hoyos M.(co-Dir.), Magnin I.E., Orkisz M. (co-Dir.), Romero E.E. et Salvado O. (rap.)
    /site7/sites/www.creatis.insa-lyon.fr/files/thesis.pdf
  3. [HERN-02d]M. Hernández Hoyos, “Segmentation anisotrope 3D pour la quantification en imagerie vasculaire par résonnance magnétique”, INSA-Lyon, 2002.
    Bloch I. (rap.), Douek P., Hernandez J.T., Magnin I.E., Nahum R., Orkisz M. et Sequeira J. (rap.)

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