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Conference Paper

  1. [FLOR-10c]L. Flórez-Valencia, Azencot, J., and Orkisz, M., Carotid arteries segmentation in CT images with use of a right generalized cylinder model, in Quinto Congreso Colombiano de Computación (5CCC), Cartagena de Indias, Colombia, 2010, p. 6 in electronic proc.
  2. [MORA-10]A. Morales Pinzón, Orkisz, M., Teillaud, S., Sánchez, J. A., and Hernández Hoyos, M., Extracción semi-automática de ejes de canales de corales, in Sexto Seminario Internacional de Procesamiento de y Análisis de Imágenes Médicas, Bogotá, Colombia, 2010, p. 10 pages in electronic proceedings.
  3. [ZULU-09a]M. A. Zuluaga, Hernández Hoyos, M., and Orkisz, M., Evaluation of partial volume effects in computer tomography for the improvement of coronary artery segmentation, in 23rd CARS - Comput Assisted Radiol Surg, Berlin, Germany, 2009, vol. 4-suppl.1, pp. S40-1 (abstract).
  4. [ZULU-09d]M. A. Zuluaga, Hernández Hoyos, M., and Orkisz, M., Evaluación del efecto de volumen parcial en imágenes TAC para el mejoramiento de la segmentación arterial coronaria, in Quinto Seminario de Ingeniería Biomédica y Quinto Seminario Internacional de Procesamiento de y Análisis de Imágenes Médicas, Bogota, Colombia, 2009, p. 4 in electronic proc.
  5. [BENM-09]F. Benmansour, Cohen, L. D., Dávila Serrano, E. E., Douek, P., Orkisz, M., and Zuluaga, M. A., New Interactive Methods for Tubular Structure Segmentation on Medical Images, in 12th ISRACAS - Israeli Symposium on Computer-Aided Surgery, Medical Robotics, and Medical Imaging, Tel-Aviv, Israel, 2009, p. 10 in CD.
  6. [FLOR-09]L. Flórez-Valencia, Azencot, J., and Orkisz, M., Carotid arteries segmentation in CT images with use of a right generalized cylinder model, in MICCAI Workshop - 3D Segmentation in the Clinic: A Grand Challenge III, London, GB, 2009, p. 8 on-line.
  7. [ZULU-09c]M. A. Zuluaga, Orkisz, M., Delgado Leyton, E. J. F., Doré, V., Morales Pinzón, A., and Hernández Hoyos, M., Adaptación del algoritmo MARACAS para la segmentación de la bifurcación de la arteria carótida y cuantificación de estenosis en imágenes TAC, in Quinto Seminario de Ingeniería Biomédica y Quinto Seminario Internacional de Procesamiento de y Análisis de Imágenes Médicas, Bogota, Colombia, 2009, p. 5 in electronic proc.
  8. [HERN-08]M. Hernández Hoyos, Zuluaga, M. A., Lozano, M., Prieto, J. C., Douek, P., Magnin, I. E., and Orkisz, M., Coronary centerline tracking in CT images with use of an elastic model and image moments, in MICCAI Workshop - Grand Challenge Coronary Artery Tracking, New York City, USA, 2008, p. 8 on-line: http://hdl.handle.net/10380/1401.
  9. [CANT-07d]D. Cantor Rivera, Orkisz, M., Uriza Carrasco, L. F., and Hernández Hoyos, M., Generación de modelos vasculares específicos al paciente a partir de IRM 3D usando el algoritmo de fast-marching, in Cuarto Seminario de Ingeniería Biomédica y Quinto Seminario Internacional de Procesamiento de y Análisis de Imágenes Médicas, Bogota, Colombia, 2007, p. 2 in electronic proc.
  10. [CARR-06b]J. F. Carrillo, Dávila Serrano, E. E., Hernández Hoyos, M., and Orkisz, M., Vascular tree extraction from 3D images, in 20th CARS - Computer Assisted Radiology and Surgery, Osaka, Japan, 2006, p. 462 (abstract).
  11. [CARR-06c]J. F. Carrillo, Hernández Hoyos, M., Dávila Serrano, E. E., and Orkisz, M., Segmentación y visualización arterial en ARM y TAC, in XXXI Congreso Colombiano de Radiología, Cartagena, Colombia, 2006, pp. 21-22 (abstract).
  12. [CARR-06a]J. F. Carrillo, Hernández Hoyos, M., and Orkisz, M., Automatic vascular tree segmentation, in XXXII Conferencia Latinoamericana de Informática CLEI, Santiago de Chile, Chile, 2006, p. 174 (abstract; 8 p. full paper on CD).
  13. [CARR-05]J. F. Carrillo, Orkisz, M., and Hernández Hoyos, M., Extraction of 3D vascular tree skeletons based on the analysis of connected components evolution, in 11th Int. IAPR Conf. Computer Analysis of Images and Patterns (CAIP 2005), Versailles, France, 2005, vol. 3691, pp. 604-611.
  14. [HADD-05b]R. Haddad, Clarysse, P., Orkisz, M., Revel, D., and Magnin, I. E., A realistic anthropomorphic numerical model of the beating heart, in Functional Imaging and Modeling of the Heart, Barcelona, Spain, 2005, pp. 384-393.
  15. [HADD-05a]R. Haddad, Clarysse, P., Orkisz, M., Revel, D., and Magnin, I. E., Un modèle numérique anthropomorphique du coeur battant, in Forum de Recherche en Génie Biologique et Médical (JSTIM-FRGBM'05), Nancy, France, 2005, vol. 26, pp. 77-78.
  16. [BARG-04]P. Bargiel, Orkisz, M., Przelaskowski, A., Piatkowska-Janko, E., Bogorodzki, P., and Wolak, T., Optimal plane search method in blood flow measurements by magnetic resonance imaging, in Optical Methods, Sensors, Image Processing, and Visualization in Medicine, Gdansk, Poland, 2004, vol. SPIE 5505, pp. 135-138.
  17. [FLOR-04a]L. Flórez-Valencia, Vincent, F., and Orkisz, M., Fast 3D pre-segmentation of arteries in computed tomography angiograms, in Int Conf Comput Vision Graphics, Warsaw, Poland, 2004, Computational Imaging and Vision., vol. 32, pp. 361-366.
  18. [ORKI-02c]M. Orkisz and Hernández Hoyos, M., Suivi de vaisseaux sanguins dans des images 3D à l'aide d'un modèle de base de moments, in Mathématiques et Imagerie, Journée 'Application à la modélisation et l'imagerie en Cardio-Vasculaire', Lyon, France, 2002.
  19. [FLOR-02]L. Flórez-Valencia, Montagnat, J., and Orkisz, M., 3D graphical models for vascular-stent pose simulation, in Int Conf Comput Vision Graphics, Zakopane, Poland, 2002, pp. 259-266.
  20. [ORKI-01d]M. Orkisz, Frery, A., Chapet, O., Mornex, F., and Magnin, I. E., Attempts to bronchial tumor motion tracking in portal images during conformal radiotherapy treatment, in 9th IAPR Conf Computer Analysis of Image Patterns (CAIP'2001), Warsaw, Poland, 2001, vol. 2124, pp. 247-255.
  21. [ORKI-01c]M. Orkisz and Hernández Hoyos, M., Models for 3D Vascular Image Analysis, in Computer Graphics, Image Processing and Recognition, Warsaw, Poland, 2001.
  22. [HERN-99]M. Hernández Hoyos, Orkisz, M., Roux, J. P., and Douek, P., Inertia-based vessel axis extraction and stenosis quantification in 3D MRA images, in Computer Assisted Radiology and Surgery (CARS'99), Paris, France, 1999, pp. 189-193.
  23. [FLAM-98b]T. Flam, Orkisz, M., Farchtchian, T., Bourlion, M., Saighi, D., Gimenez, G., and Debré, B., Image-based renal stone tracking to improve efficacy of extracorporeal shock wave lithotripsy, in European Urology, 33 : S1, XIIIth Congress of the European Association of Urology, Barcelona, Spain, 1998, p. 113.
  24. [ORKI-97b]M. Orkisz, Mosnier, S., Roux, J. P., Gonnot, G., Brion, R., and Magnin, I. E., Automated heart-wall instantaneous velocity estimation from M-mode echography images, in World Congress on Medical Physics and Biomedical Engineering, Nice, France, 1997, vol. 35, p. 682.
  25. [BRES-96]C. Bresson, Orkisz, M., Champin, O., Douek, P., and Magnin, I. E., Traitement d'images angiographiques IRM, in Carrefour de la Fondation Rhône-Alpes Futur, (résumé 2 pages), Lyon, France, 1996.
  26. [ORKI-96b]M. Orkisz, Douek, P., Magnin, I. E., and Champin, O., Anisotropic Non-Linear Filtering for Image Improvement in MR Angiography, in 10th Int Conf on Computer Assisted Radiology CAR'96, Paris, France, 1996, pp. 260–265.
  27. [ORKI-96a]M. Orkisz, Douek, P., Bresson, C., and Magnin, I. E., Vessel Visibility Improvement in MR Angiography by Anisotropic Non-Linear Filtering, in International Society of Magnetic Resonance in Medicine Scientific Meeting, New York, USA, 1996, p. 1649.
  28. [ORKI-95a]M. Orkisz, Prise en compte des discontinuités dans l'estimation du mouvement : une revue, in Journée d'études : le mouvement dans les images et les signaux, SEE Club 29 et CNRS GDR 134, Paris, France, 1995.
  29. [ORKI-93]M. Orkisz and Pellerin, D., Estimation du mouvement par approche mixte : droites de contrainte/mise en correspondance, in 14e Colloque sur le Traitement du Signal et des Images GRETSI, Juan-les-Pins, France, 1993, pp. 855–858.

Book Chapter

  1. [FLOR-17a]Right generalized cylinder model for vascular segmentation, in Computing and Visualization for Intravascular Imaging and Computer-Assisted Stenting, 1st ed., Elsevier, 2017, pp. 131-156.
  2. [ORKI-04]M. Orkisz and Hernández Hoyos, M., Podstawy technik segmentacji stosowanych w przetwarzaniu obrazow 3D naczyn krwionosnych, in Polska Akademia Nauk Biocybernetyka i Inzynieria Biomedyczna 2000, Obrazowanie biomedyczne, vol. 8, M. Nalecz, Chmielewski, L., Kulikowski, J. M., and Nowakowski, A. Warszawa, Poland: Akademicka Oficyna Wydawnicza EXIT, Publ., 2004, pp. 351–372.

Invited Conference

  1. [COUR-12]G. Courbebaisse, Latt, J., Malaspinas, O., Orkisz, M., and Chopard, B., Blood flow simulation within Stented Intracranial Aneurysm, ICFD 2012, Ninth International Conference on Flow Dynamics. Sendai, Japan, 2012.
  2. [ORKI-09a]M. Orkisz, Medical imaging in CREATIS-LRMN, Inauguration de COLIVRI, Universidad de los Andes. Bogota, Colombia, 2009.
  3. [ORKI-02b]M. Orkisz and Hernández Hoyos, M., From inertia matrix to the analysis of vascular pathologies, Int Conf Computer Vision and Graphics. Zakopane, Poland, pp. 6-15, 2002.
  4. [ORKI-01f]M. Orkisz and Hernández Hoyos, M., Models for 3D Vascular Image Analysis, Computer Graphics, Image Processing and Recognition. Warsaw, Poland, 2001.
  5. [ORKI-01b]M. Orkisz and Hernández Hoyos, M., Models for 3D vascular image analysis, Med. Informatics and Technologies, vol. 2. Jaszowiec, Poland, pp. IP13-IP22, 2001.
  6. [ORKI-98d]M. Orkisz and Hernández Hoyos, M., Développements récents dans le traitement d'images : principes des techniques de segmentation d'images vasculaires 3D, 2-èmes Journées du Groupe de Recherche et de Réflexion en Angiographie par Résonance Magnétique. Paris, France, pp. 94-103, 1998.

HDR

  1. [ORKI-03]M. Orkisz, Segmentation de formes linéiques et suivi d'objets déformables dans des images médicales 2D et 3D. INSA Lyon, 2003.
    Coquerez J.P. (rap.), Jolion J.M. (rap.), Magnin I.E., Preteux F. (rap.) et Revel D.

Thesis

  1. [MORA-16]A. Morales Pinzón, Lung segmentation and airway tree matching : Application to aeration quantification in CT images of subjects with ARDS, Université Claude Bernard Lyon 1; Universidad de los Andes, Lyon, Bogotá, 2016.
    Jury: Anna Fabijanska, Łódz University of Technology, Rapporteur Isabelle Bloch, Telecom ParisTech, Rapporteur Fraçoise Prêteux, École des Ponts ParisTech Examinateur Jean-Christophe Richard, Université Lyon 1, Hôpital de la Croix Rousse, Examinateur José Tiberio Hernández, Universidad de los Andes, Examinateur Leonardo Flórez Valencia, Pontificia Universidad Javeriana, Examinateur Maciej Orkisz, Université Lyon 1, Directeur de thèse Marcela Hernández Hoyos, Universidad de los Andes, Directeur de thèse
    PDF icon Alfredo MORALES PINZON.pdf (20.9 MB)
  2. [COUR-15]E. - J. Courtial, Elaboration de matériaux silicone au comportement mécanique adapté pour la réalisation de fantômes aortiques patients-spécifiques, Université Claude Bernard Lyon 1, Lyon, 2015.
    Jury : AUBRY Thierry (rapporteur), AVRIL Stéphane (président), DOUEK Philippe, FULCHIRON René (superviseur), HUET Laurent, LALANDE Alain (rapporteur), ORKISZ Maciej (co-superviseur)
    PDF icon Edwin-Joffrey COURTIAL.pdf (8.62 MB)
  3. [ZAHND-12d]G. Zahnd, Estimation du mouvement bi-dimensionnel de la paroi artérielle en imagerie ultrasonore par une approche conjointe de segmentation et de speckle tracking, INSA de Lyon, 2012.
    Jury : Laurent Sarry (rapporteur), Denis Kouamé (rapporteur), Christian Jutten, André Sérusclat, Loïc Boussel, D. Vray (superviseur), Maciej Orkisz (co-superviseur)
    PDF icon PhD_Guillaume_Zahnd.pdf (14.38 MB)
  4. [ZULU-11d]M. A. Zuluaga, Methods for the automation of vascular lesions detection in computed tomography images, Université Claude Bernard Lyon 1, Lyon, 2011.
    Bloch I. (rap.), Hernández J.T. (Pdt), Hernández Hoyos M.(co-Dir.), Magnin I.E., Orkisz M. (co-Dir.), Romero E.E. et Salvado O. (rap.)
  5. [FLOR-06]L. Flórez-Valencia, Modèle d'état de cylindre généralisé et la quantification de sténoses artérielles en imagerie 3D, INSA Lyon, 2006.
    Jacques Demongeot (rap.), Philippe Douek, José Tiberio Hernández, Isabelle Magnin (prés.), Maciej Orkisz, Jean Sequeira (rap.)
  6. [HERN-02d]M. Hernández Hoyos, Segmentation anisotrope 3D pour la quantification en imagerie vasculaire par résonnance magnétique, INSA-Lyon, 2002.
    Bloch I. (rap.), Douek P., Hernandez J.T., Magnin I.E., Nahum R., Orkisz M. et Sequeira J. (rap.)

Miscellaneous

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