Publications

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Book Chapter

[CAMA-11]S. Camarasu-Pop, Glatard, T., Benoit-Cattin, H., et Sarrut, D., « Enabling Grids for GATE Monte-Carlo Radiation Therapy Simulations with the GATE-Lab », in Applications of Monte Carlo Method in Science and Engineering, InTech 2011.

Conference Paper

[LEPO-11d]B. Leporq, Camarasu-Pop, S., Pilleul, F., et Beuf, O., « 3D-liver MR-DCE imaging for quantitative perfusion mapping using EGI grid », in Colloque Recherche en Imagerie et Technologies pour la Santé (RITS), Rennes, France, 2011.

[LEPO-11c]B. Leporq, Camarasu-Pop, S., Pilleul, F., et Beuf, O., « 3D-liver quantitative perfusion mapping using EGEE grid with MR-DCE imaging and MS-325 blood pool contrast agent », in ISMRM, Montreal, Canada, 2011, p. 2046.

[GLAT-09a]T. Glatard, Zhou, X., Camarasu-Pop, S., Smirnova, O., et Muller, H., « A comparison between ARC and gLite for medical image processing on Grids », in 2nd workshop on Medical imaging on GRID, HPC and GPU infrastructures: achievements and perspectives (MICCAI-Grid), London, UK, 2009.

MICCAI_ARC_gLite-final.pdf (102.37 KB)

[MOUT-13]C. Mouton, Dávila Serrano, E. E., Cervenansky, F., Camarasu-Pop, S., Correa, E., Flórez-Valencia, L., Hernández Hoyos, M., et Orkisz, M., « CreaTools: A development framework for medical image processing software ; an application to segmentation, anomaly detection and quantification for coronary arteries », in European BioImage Analysis Symposium 2013, IRB Barcelona, Spain, 2013.

2013_10_Barcelona_Abstract.pdf (42.41 KB)

[DAVI-12b]E. E. Dávila Serrano, Guigues, L., Cervenansky, F., Camarasu-Pop, S., Riveros Reyes, J. G., Flórez-Valencia, L., Hernández Hoyos, M., et Orkisz, M., « CreaTools: a framework to develop medical image processing software. Application to simulate pipeline stent deployment in intracranial vessels with aneurysms », in Int. Conf. Comput. Vision. Graphics., Warsaw, Poland, 2012, vol. LNCS 7594, p. 55-62.

[DAVI-12c]E. E. Dávila Serrano, Guigues, L., Roux, J. P., Cervenansky, F., Mouton, C., Camarasu-Pop, S., Flórez-Valencia, L., Hernández Hoyos, M., et Orkisz, M., « CreaTools: applications and development framework for medical image-processing software », in Libre Software Meeting, Geneva, 2012.

[DAVI-12a]E. E. Dávila Serrano, Guigues, L., Roux, J. P., Cervenansky, F., Camarasu-Pop, S., Flórez-Valencia, L., Hernández Hoyos, M., et Orkisz, M., « CreaTools: applications and development framework for medical image-processing software », in ISBI Workshop on Open Source Medical Image Analysis Software, Barcelona, Spain, 2012.

[CAMA-08a]S. Camarasu-Pop, Benoit-Cattin, H., Montagnat, J., et Racoceanu, D., « Grids for Content-Based Medical Image Indexing and Retrieval », in ICT4Health, Oncomedia, Manila, The Philippines, 2008.

[CHAI-17]A. Chai, Bazm, M., Camarasu-Pop, S., Glatard, T., Benoit-Cattin, H., et Suter, F., « Modeling Distributed Platforms from Application Traces for Realistic File Transfer Simulation », in 17th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGrid), 2017.

[GLAT-09]T. Glatard et Camarasu-Pop, S., « Modelling pilot-job applications on production grids », in 7th international workshop on Algorithms, Models and Tools for Parallel Computing on Heterogeneous Platforms (Heteropar 09), Delft, The Netherlands, 2009.

heteropar09-glatard-camarasu-final.pdf (1.53 MB)

[FERR-11]R. Ferreira da Silva, Camarasu-Pop, S., Grenier, B., Hamar, V., Manset, D., Montagnat, J., Revillard, J., Balderrama, J. R., Tsaregorodtsev, A., et Glatard, T., « Multi-infrastructure workflow execution for medical simulation in the Virtual Imaging Platform », in HealthGrid 2011, Bristol, UK, 2011.

hg11-platform.pdf (856.36 KB)

[GLAT-12]T. Glatard, Marion, A., Benoit-Cattin, H., Camarasu-Pop, S., Clarysse, P., Ferreira da Silva, R., Forestier, G., Gibaud, B., Lartizien, C., Liebgott, H., Moulin, K., et Friboulet, D., « Multi-modality image simulation with the virtual imaging platform: Illustration on cardiac MRI and echography », in IEEE International Symposium on Biomedical Imaging (ISBI), Barcelona, Spain, 2012, p. 98-101.

isbi2012-vip.pdf (808.08 KB)

[MARI-11b]A. Marion, Forestier, G., Benoit-Cattin, H., Camarasu-Pop, S., Clarysse, P., Ferreira da Silva, R., Gibaud, B., Glatard, T., Hugonnard, P., Lartizien, C., Liebgott, H., Specovius, S., Tabary, J., Valette, S., et Friboulet, D., « Multi-modality medical image simulation of biological models with the Virtual Imaging Platform (VIP) », in The 24th International Symposium on Computer-Based Medical Systems (CBMS 2011), Bristol, UK, 2011, p. 1-6.

cbms2011-multimod.pdf (726.29 KB)

[LI-10]T. Li, Camarasu-Pop, S., Glatard, T., Grenier, T., et Benoit-Cattin, H., « Optimization of Mean-Shift scale parameters on the EGEE grid », in Studies in health technology and informatics, Proceedings of Healthgrid 2010, 2010, vol. 159, p. 203-214.

hg10.pdf (1.03 MB)

[CAMA-10a]S. Camarasu-Pop, Cervenansky, F., Cardenas, Y., Nief, J., et Benoit-Cattin, H., « Overview of Medical Data Management Solutions for Research Communities », in CCGridHealth, Melbourne, Australia, 2010.

[GUET-11b]P. Gueth, Camarasu-Pop, S., Glatard, T., Grevillot, L., et Sarrut, D., « PBS proton treatment plan simulation with the GATE-Lab », in 50th International PTCOG meeting (Particle Therapy Co-Operative Group), Philadelphia, US, 2011.

[MAHI-17b]L. Mahieu-Williame, Gaillard, S., Grenier, D., Bolbos, R., Langlois, J. B., Lamberton, F., Camarasu-Pop, S., et Beuf, O., « Protocole de caractérisation d’antenne radiofréquence pour l’IRM », in SFRMBM, Bordeaux, FRANCE, 2017.

[MAHI-17a]L. Mahieu-Williame, Gaillard, S., Grenier, D., Bolbos, R., Langlois, J. B., Lamberton, F., Camarasu-Pop, S., et Beuf, O., « PROTOCOLE DE CARACTERISATION DE CAPTEUR IRM », in RITS, Lyon, FRANCE, 2017.

[CAMA-13a]S. Camarasu-Pop, Glatard, T., et Benoit-Cattin, H., « Simulating Application Workflows and Services Deployed on the European Grid Infrastructure », in 13th IEEE/ACM International Symposium on Cluster, Cloud, and Grid Computing (CCGrid), Delft, The Netherlands, 2013, p. 18--25.

simulation_ccgrid2013_revised.pdf (208.3 KB)

[MAHI-17b]L. Mahieu-Williame, Gaillard, S., Grenier, D., Bolbos, R., Langlois, J. B., Lamberton, F., Camarasu-Pop, S., et Beuf, O., « SNR and volume characterization of RF coils: A simple procedure and an automatic post-processing tool for a straightforward comparison », in 25th Annual meeting of the ISMRM, Honolulu, Hawaï, USA, 2017.

[CAMA-08b]S. Camarasu-Pop, Benoit-Cattin, H., Guigues, L., Clarysse, P., Bernard, O., et Friboulet, D., « Towards a Virtual Radiological Platform Based on a Grid Infrastructure », in Medical imaging on grids: achievements and perspectives (MICCAI Grid Workshop), New York, USA, 2008, p. 85-95.

[MAHE-09]K. Maheshwari, Glatard, T., Schaerer, J., Delhay, B., Camarasu-Pop, S., Clarysse, P., et Montagnat, J., « Towards Production-level Cardiac Image Analysis with Grids », in HealthGrid'09, Berlin, 2009.

healthgrid09.pdf (813.4 KB)

[TAN-10]W. - J. Tan, Ching, C. T. M., Camarasu-Pop, S., Calvat, P., et Glatard, T., « Two experiments with application-level quality of service on the EGEE grid », in Proceeding of the 2nd workshop on Grids meets autonomic computing, New York, NY, USA, 2010, p. 11–20.

Journal Article

[GLA18]T. Glatard, Kiar, G., Aumentado-Armstrong, T., Beck, N., Bellec, P., Bernard, R., Bonnet, A., Camarasu-Pop, S., Cervenansky, F., Das, S., da Silva, R. Ferreira, Flandin, G., Girard, P., Gorgolewski, K. J., Guttmann, C. R. G., Hayot-Sasson, V., Quirion, P. - O., Rioux, P., Rousseau, M. - E., et Evans, A. C., « Boutiques: a flexible framework for automated application integration in computing platforms », GigaScience, vol. inpress, 2018.

[CAMA-16]S. Camarasu-Pop, Glatard, T., et Benoit-Cattin, H., « Combining Analytical Modeling, Realistic Simulation and Real Experimentation for the Optimization of Monte-Carlo Applications on the European Grid Infrastructure », Future Generation Computer Systems, vol. 57, p. 13-23, 2016.

[CAMA-10]S. Camarasu-Pop, Glatard, T., Moscicki, J. T., Benoit-Cattin, H., et Sarrut, D., « Dynamic partitioning of GATE Monte-Carlo simulations on EGEE », Journal of Grid Computing, vol. 8, p. 241-259, 2010.

[LEPO-13a]B. Leporq, Camarasu-Pop, S., Dávila Serrano, E. E., Pilleul, F., et Beuf, O., « Enabling 3D-Liver Perfusion Mapping from MR-DCE Imaging Using Distributed Computing », Journal of Medical Engineering, vol. 2013, 2013.

[HATT2018177]M. Hatt, Laurent, B., Ouahabi, A., Fayad, H., Tan, S., Li, L., Lu, W., Jaouen, V., Tauber, C., Czakon, J., Drapejkowski, F., Dyrka, W., Camarasu-Pop, S., Cervenansky, F., Girard, P., Glatard, T., Kain, M., Yao, Y., Barillot, C., Kirov, A., et Visvikis, D., « The first MICCAI challenge on PET tumor segmentation », Medical Image Analysis, vol. 44, p. 177 - 195, 2018.

[ZHOU-18]Y. Zhou, Giffard-Roisin, S., De Craene, M., Camarasu-Pop, S., D'hooge, J., Alessandrini, M., Friboulet, D., Sermesant, M., et Bernard, O., « A Framework for the Generation of Realistic Synthetic Cardiac Ultrasound and Magnetic Resonance Imaging Sequences from the same Virtual Patients », IEEE Transactions on Medical Imaging, vol. 37, p. 741-754, 2018.

[GLAT-11]T. Glatard et Camarasu-Pop, S., « A model of pilot-job resource provisioning on production grids », Parallel Computing, vol. 37, p. 684-692, 2011.

parco10.pdf (531.99 KB)

[CAMA-13]S. Camarasu-Pop, Glatard, T., Ferreira da Silva, R., Gueth, P., Sarrut, D., et Benoit-Cattin, H., « Monte-Carlo Simulation on Heterogeneous Distributed Systems: a Computing Framework with Parallel Merging and Checkpointing Strategies », Future Generation Computer Systems, vol. 29, p. 728--738, 2013.

[COMM-18]O. Commowick, Istace, A., Kain, M., Laurent, B., Leray, F., Simon, M., Camarasu-Pop, S., Girard, P., Améli, R., Ferré, J. - C., Kerbrat, A., Tourdias, T., Cervenansky, F., Glatard, T., Beaumont, érémy, Doyle, S., Forbes, F., Knight, J., Khademi, A., Mahbod, A., Wang, C., McKinley, R., Wagner, F., Muschelli, J., Sweeney, E., Roura, E., Lladó, X., Santos, M. M., Santos, W. P., Silva-Filho, A. G., Tomas-Fernandez, X., Urien, élène, Bloch, I., Valverde, S., Cabezas, M., Vera-Olmos, F. Javier, Malpica, N., Guttmann, C., Vukusic, S., Edan, G., Dojat, M., Styner, M., Warfield, S. K., Cotton, F., et Barillot, C., « Objective Evaluation of Multiple Sclerosis Lesion Segmentation using a Data Management and Processing Infrastructure », Scientific Reports, vol. 869133541861714842334460201527102932142611011155734155, 2018.

[GLAT-17]T. Glatard, Rousseau, M. - E., Camarasu-Pop, S., Adalat, R., Beck, N., Das, S., da Silva, R. Ferreira, Khalili-Mahani, N., Korkhov, V., Quirion, P. - O., Rioux, P., Olabarriaga, S. D., Bellec, P., et Evans, A. C., « Software architectures to integrate workflow engines in science gateways », Future Generation Computer Systems, p. -, 2017.

[BERN-16]O. Bernard, Bosch, J. G., Heyde, B., Alessandrini, M., Barbosa, D., D'hooge, J., Camarasu-Pop, S., Cervenansky, F., et Valette, S., « Standardized evaluation system for left ventricular segmentation algorithms in 3D echocardiography », IEEE Transactions on Medical Imaging, vol. 35, p. 1915-1926, 2016.

[GLAT-13]T. Glatard, Lartizien, C., Gibaud, B., Ferreira da Silva, R., Forestier, G., Cervenansky, F., Alessandrini, M., Benoit-Cattin, H., Bernard, O., Camarasu-Pop, S., Cerezo, N., Clarysse, P., Gaignard, A., Hugonnard, P., Liebgott, H., Marache, S., Marion, A., Montagnat, J., Tabary, J., et Friboulet, D., « A Virtual Imaging Platform for multi-modality medical image simulation », IEEE Transactions on Medical Imaging, vol. 32, p. 110-118, 2013.

tmi-2012.pdf (487.25 KB)

Miscellaneous

[WANG-12]L. Wang, Camarasu-Pop, S., Glatard, T., Zhu, Y. M., et Magnin, I. E., « Diffusion MRI Simulation with the Virtual Imaging Platform », Journées scientifiques mésocentres et France Grilles 2012. Paris, France, 2012.

[CAMA-09a]S. Camarasu-Pop, Sarrut, D., Benoit-Cattin, H., et Glatard, T., « GATE-Lab ». Barcelone, Espagne, 2009.

[ARRA-12]L. Arrabito, Bouvet, D., Camarasu-Pop, S., Cardenas, Y., Clémentin, N., Cordier, H., Gallina, S., Garnier, J., Gay, P., Glatard, T., Hamar, V., Lavalley, C., Mathieu, G., Sapunov, M., Ferreira da Silva, R., et Tsaregorodtsev, A., « Instance nationale et multi-communauté de DIRAC pour France Grilles », Journées scientifiques mésocentres et France Grilles 2012. Paris, France, 2012.

[GLAT-09c]T. Glatard, Camarasu-Pop, S., Benoit-Cattin, H., Clarysse, P., Montagnat, J., Moscicki, J., Olabarriaga, S., et Sarrut, D., « Integrating pilot-jobs, workflows and virtual resource browser to foster medical image analysis on EGEE ». Catania, Italie, 2009.

[45716]T. Glatard, Rousseau, M., Camarasu-Pop, S., Rioux, P., Sherif, T., Beck, N., Adalat, R., et Evans, A. C., « Interoperability between the CBRAIN and VIP web platforms for neuroimage analysis ». Neuroinformatics 2014, Leiden, Netherlands, 2014.

[CAMA-08c]S. Camarasu-Pop, Benoit-Cattin, H., Guigues, L., et Sarrut, D., « Porting ThIS on the EGEE grid ». Istanbul, Turquie, 2008.

[CAMA-09]S. Camarasu-Pop, Benoit-Cattin, H., Moscicki, J., Sarrut, D., et Glatard, T., « Results and evaluation of ThIS on grid ». Catania, Italie, 2009.

[CAMA-08d]S. Camarasu-Pop, Guigues, L., Benoit-Cattin, H., et Sarrut, D., « ThIS on the Grid ». Clermont-Ferrand, France, 2008.

Report

[CAMA-08]S. Camarasu-Pop, « Conception et optimisation d’un système d’exécution d'une application d'imagerie médicale sur grille de calcul », 2008.

rapport_stage_sorina_camarasu.pdf (921.78 KB)

Thesis

[CAMA-13b]S. Camarasu-Pop, « Exploitation d'infrastructures hétérogènes de calcul distribué pour la simulation Monte-Carlo dans le domaine médical », INSA Lyon, Lyon, 2013.

Jury : Frédéric Desprez (Rapporteur), Ignacio Blanquer (Rapporteur), M. Johan Montagnat, Arnaud Legrand, Jakub T. Moscicki, David Sarrut, Tristan Glatard (co-directeur), Hugues Benoit-Cattin (directeur)

PhD_manuscript_final_version.pdf (3.99 MB)