General

[ TMI 2013 ] T. Glatard, C. Lartizien, B. Gibaud, R. Ferreira da Silva, G. Forestier, F. Cervenansky, M. Alessandrini, H. Benoit-Cattin, O. Bernard, S. Camarasu-Pop, N. Cerezo, P. Clarysse, A. Gaignard, P. Hugonnard, H. Liebgott, S. Marache, A. Marion, J. Montagnat, J. Tabary, and D. Friboulet, A Virtual Imaging Platform for multi-modality medical image simulation, IEEE Transactions on Medical Imaging, vol. 32, no. 1, pp. 110-118, 2013
[ ISBI 2012-1 ] T. Glatard, A. Marion, H. Benoit-Cattin, S. Camarasu-Pop, P. Clarysse, R. Ferreira da Silva, G. Forestier, B. Gibaud, C. Lartizien, H. Liebgott, K. Moulin, and D. Friboulet Multi-modality image simulation with the virtual imaging platform: Illustration on cardiac MRI and echography, IEEE International Symposium on Biomedical Imaging (ISBI), Barcelona, Spain, pp 98-101, 2012

Applications

[ Nature 2021 ] J.-F. Mathiot, L.Gerbaud, V. Breton, Highlighting the impact of social relationships on the propagation of respiratory viruses using percolation theory. Nature Scientific Reports 2021.
[ Frontiers 2020 ] Deruelle, Tristan and Kober, Frank and Perles-Barbacaru, Adriana and Delzescaux, Thierry and Noblet, Vincent and Barbier, Emmanuel L. and Dojat, Michel A Multicenter Preclinical MRI Study: Definition of Rat Brain Relaxometry Reference Maps. Frontiers in Neuroinformatics 2020.
[ Atomic 2020 ] Panagiotis Gonias, Panagiotis Zaverdinos, Mohammed Alkhorayef, Abdelmoneim Sulieman, Constantin Kappas, Kiki Theodorou Monte Carlo Simulation of 6MV Varian Clinac Photon Beam Using GEANT4-GATE . Journal of Atomic and Nuclear Physics 2020.
[ CCGrid 2019 ] M. Chauvin and G. Mathieu and S. Camarasu-Pop and A. Bonnet and M. Bardies and I. Perseil Enabling Large Scale Data Production for OpenDose with GATE on the EGI Infrastructure. CCGrid Life 2019.
[ Nature 2018 ] Olivier Commowick, Audrey Istace, Michael Kain, Baptiste Laurent, Florent Leray, Mathieu Simon, Sorina Camarasu-Pop, Pascal Girard, Roxana Ameli, Jean-Christophe Ferré, Anne Kerbrat, Thomas Tourdias, Frédéric Cervenansky, Tristan Glatard, Jeremy Beaumont, Senan Doyle, Florence Forbes, Jesse Knight, April Khademi, Amirreza Mahbod, Chunliang Wang, Richard Mckinley, Franca Wagner, John Muschelli, Elizabeth Sweene, Eloy Roura, Xavier Lladó, Michel Santos, Wellington Santos, Abel Silva-Filho, Xavier Tomas-Fernandez, Hélène Urien, Isabelle Bloch, Sergi Valverde, Mariano Cabezas, Francisco Vera-Olmos, Norberto Malpica, Charles Guttmann, Sandra Vukusic, Gilles Edan, Michel Dojat, Martin Styner, Simon Warfield, François Cotton, Christian BarillotObjective Evaluation of Multiple Sclerosis Lesion Segmentation using a Data Management and Processing Infrastructure. Scientific Reports, Nature Publishing Group, 2018, 8, pp.13650. .
[ SPIE 2013 ] Alessandro Crimi, Olivier Commowick, Jean-Christoph Ferre, Adil Maarouf, Gilles Edan, Christian Barillot, "Classification of Multiple sclerosis lesions evolution in patients with clinically isolated syndrome ." In Proceedings of the SPIE: Medical Imaging 2013, Orlando, Florida, USA, 2013.
[ ISBI 2013 ] Alessandro Crimi, Olivier Commowick, Jean-Christoph Ferre, Adil Maarouf, Gilles Edan, Christian Barillot, "Semi automatic classification of Multiple sclerosis lesion pattern in patients with clinically isolated syndrome." International symposium on biomedical imaging, San-Francisco, California, USA, 2013
[ Acoustics 2012 ] G. Xinxin, D. Friboulet, H. Liebgott, "Back-progagation based beamformer design for transverse oscillations in echocardiography", Proc. Acoustics 2012, Nantes, France, Avril 2012
[ ISBI 2012 ] G. Xinxin, D. Friboulet, H. Liebgott, Transverse oscillations beamformer design for sector scan using back-propagation, Proc. IEEE International Symposium on Biomedical Imaging (ISBI), Barcelona, Spain, May 2012
[ MBIA 2012 ] Fang Cao, Olivier Commowick, Elise Bannier, Jean-Christophe Ferré, Gilles Edan, Christian Barillot, P .-T. Yap et al., MRI Estimation of T1 Relaxation Time Using a Constrained Optimization Algorithm MBIA 2012, Oct 2012, Nice, France. pp. 203-214

Semantic modeling and tools

[ JBI 2014 ] Bernard Gibaud, Germain Forestier, Hugues Benoit-Cattin, Frédéric Cervenansky, Patrick Clarysse, Denis Friboulet, Alban Gaignard, Patrick Hugonnard, Carole Lartizien, Hervé Liebgott, Johan Montagnat, Joachim Tabary, Tristan Glatard, OntoVIP: An ontology for the annotation of object models used for medical image simulation, Journal of Biomedical Informatics, Volume 52, December 2014, Pages 279-292.
[ JWS 2014 ] Alban Gaignard, Johan Montagnat, Bernard Gibaud, Germain Forestier, Tristan Glatard, Domain-specific summarization of Life-Science e-experiments from provenance traces, Web Semantics: Science, Services and Agents on the World Wide Web, Volume 29, December 2014, Pages 19-30.
[ JGC 2013 ] N. Cerezo, J. Montagnat, M. Blay-Fornarino. Computer-assisted Scientific Workflow Design, Journal of Grid Computing September 2013, Volume 11, Issue 3, pp 585-612.
[ HISB 2012 ] B. Gibaud, G. Forestier, H. Benoit-Cattin, F. Cervenansky, P. Clarysse, D. Friboulet, A. Gaignard, P. Hugonnard, C. Lartizien, H. Liebgott, J. Montagnat, J. Tabary, and T. Glatard, OntoVIP: an ontology for the annotation of object models used for medical image simulation, IEEE International Conference on Healthcare Informatics, Imaging and Systems Biology (HISB), La Jolla, California, USA, pp. 110-119, 2012.
[ DCICTIA-MICCAI 2012 ] A. Gaignard, J. Montagnat, C. Faron-Zucker, O. Corby, Semantic Federation of Distributed Neurodata. MICCAI Workshop on Data- and Compute-Intensive Clinical and Translational Imaging Applications (DCICTIA-MICCAI 2012), pp 41-50, Nice, France, Oct. 2012.
[ WORKS 2011 ] N. Cerezo, J. Montagnat, Scientific Workflows Reuse through Conceptual Workflows, 6th Workshop on Workflows in Support of Large-Scale Science (WORKS), associated to SuperComputing, Seattle (USA), November 2011.
[ IEEE CBMS 2011 ] G. Forestier, A. Marion, H. Benoit-Cattin, P. Clarysse, D. Friboulet, T. Glatard, P. Hugonnard, C. Lartizien, H. Liebgott, J. Tabary, B. Gibaud, Sharing object models for multi-modality medical image simulation: a semantic approach, Computer-Based Medical Systems (CBMS), 2011 24th International Symposium on pp.1-6, 27-30 June 2011
[ KEOD 2011 ] A. Gaignard, J. Montagnat, B. Wali, B. Gibaud. Characterizing semantic service parameters with Role concepts to infer domain-specific knowledge at runtime. International Conference on Knowledge Engineering and Ontology Development (KEOD'11), Paris, France, Oct. 2011.

Computing and storage

[ FGCS 2013 ] R. Ferreira da Silva, T. Glatard, and F. Desprez, "Controlling fairness and task granularity in distributed, online, non-clairvoyant workflow executions", Concurrency and Computation: Practice and Experience, vol. 26, no. 14, pp. 2347-2366, 2014
[ FGCS 2013 ] R. Ferreira da Silva, T. Glatard, and F. Desprez, "Self-healing of workflow activity incidents on distributed computing infrastructures", Future Generation Computer Systems, to appear, 2013.
[ CoreGrid 2012 ] R. Ferreira da Silva, T. Glatard, A science-gateway workload archive to study pilot jobs, user activity, bag of tasks, task sub-steps, and workflow executions, CoreGRID/ERCIM Workshop on Grids, Clouds and P2P Computing - CGWS 2012, Rhodes Island, Greece, Springer Berlin Heidelberg, pp. 79-88.
[ CCGrid 2012 ] R. Ferreira da Silva, T. Glatard, and F. Desprez, Self-healing of operational workflow incidents on distributed computing infrastructures, 12th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing - CCGrid 2012, Ottawa, Canada, pp. 318-325.
[ IEEE CBMS 2011a ], A. Marion, G. Forestier, H. Liebgott, C. Lartizien, H. Benoit-Cattin, S. Camarasu-Pop, T. Glatard, R. Ferreira da Silva, P. Clarysse, S. Valette, B. Gibaud, P. Hugonnard, J. Tabary, D. Friboulet, Multi-modality image simulation of biological models within VIP, Computer-Based Medical Systems (CBMS), 2011 24th International Symposium on , pp.1-6, 27-30 June 2011.
[ HealthGrid 2011 ], Multi-platform workflow execution for medical simulation, Rafael Ferreira da Silva, Sorina Camarasu-Pop, Baptiste Grenier, Vanessa Hamar, David Manset, Johan Montagnat, Jérôme Revillard, Javier Rojas Balderrama, Andrei Tsaregorodtsev, Tristan Glatard, proceedings of the 9th HealthGrid conference, 2011.
[ IEEE ICWS 2011 ], J. Rojas Balderrama, J. Montagnat, D. Lingrand, jGASW: A Service-Oriented Framework Supporting High Throughput Computing and Non-functional Concerns, Proceedings of the IEEE International Conference on Web Services, pp. 691-694, 2010.

vip@creatis.insa-lyon.fr
VIP was funded by ANR under grant ANR-09-COSI-03.