{"id":431,"date":"2021-02-18T12:07:32","date_gmt":"2021-02-18T12:07:32","guid":{"rendered":"http:\/\/www.creatis.insa-lyon.fr\/~grenier\/?p=431"},"modified":"2021-11-09T16:18:13","modified_gmt":"2021-11-09T16:18:13","slug":"simple-filtering-and-segmentation-of-medical-image","status":"publish","type":"post","link":"https:\/\/www.creatis.insa-lyon.fr\/~grenier\/?p=431","title":{"rendered":"Simple Filtering and Segmentation of medical image"},"content":{"rendered":"\n<p>Here is the notebook to start with SimpleITK and basics such as N4 bias field correction on MRI and segmentation using region growing and python programming.<\/p>\n\n\n\n<p>We also study the k-means segmentation.<\/p>\n\n\n\n<p>Python notebook : (<a href=\"https:\/\/www.creatis.insa-lyon.fr\/~grenier\/wp-content\/uploads\/teaching\/DIP\/TP-FSRMED_MRIFilteringAndSegmentation.zip\">zip<\/a>)<\/p>\n\n\n\n<div class=\"wp-block-image wp-duotone-default-filter\"><figure class=\"aligncenter size-full\"><img loading=\"lazy\" decoding=\"async\" width=\"1134\" height=\"300\" src=\"https:\/\/www.creatis.insa-lyon.fr\/~grenier\/wp-content\/uploads\/N4.png\" alt=\"\" class=\"wp-image-432\" srcset=\"https:\/\/www.creatis.insa-lyon.fr\/~grenier\/wp-content\/uploads\/N4.png 1134w, https:\/\/www.creatis.insa-lyon.fr\/~grenier\/wp-content\/uploads\/N4-300x79.png 300w, https:\/\/www.creatis.insa-lyon.fr\/~grenier\/wp-content\/uploads\/N4-1024x271.png 1024w, https:\/\/www.creatis.insa-lyon.fr\/~grenier\/wp-content\/uploads\/N4-768x203.png 768w\" sizes=\"auto, (max-width: 1134px) 100vw, 1134px\" \/><\/figure><\/div>\n","protected":false},"excerpt":{"rendered":"<p>Here is the notebook to start with SimpleITK and basics such as N4 bias field correction on MRI and segmentation using region growing and python programming. We also study the k-means segmentation. Python notebook : (zip)<\/p>\n","protected":false},"author":2,"featured_media":0,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"templates\/template-full-width.php","format":"standard","meta":{"footnotes":""},"categories":[6,4],"tags":[],"class_list":["post-431","post","type-post","status-publish","format-standard","hentry","category-image-processing","category-teaching"],"_links":{"self":[{"href":"https:\/\/www.creatis.insa-lyon.fr\/~grenier\/index.php?rest_route=\/wp\/v2\/posts\/431","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.creatis.insa-lyon.fr\/~grenier\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.creatis.insa-lyon.fr\/~grenier\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.creatis.insa-lyon.fr\/~grenier\/index.php?rest_route=\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/www.creatis.insa-lyon.fr\/~grenier\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=431"}],"version-history":[{"count":4,"href":"https:\/\/www.creatis.insa-lyon.fr\/~grenier\/index.php?rest_route=\/wp\/v2\/posts\/431\/revisions"}],"predecessor-version":[{"id":437,"href":"https:\/\/www.creatis.insa-lyon.fr\/~grenier\/index.php?rest_route=\/wp\/v2\/posts\/431\/revisions\/437"}],"wp:attachment":[{"href":"https:\/\/www.creatis.insa-lyon.fr\/~grenier\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=431"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.creatis.insa-lyon.fr\/~grenier\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=431"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.creatis.insa-lyon.fr\/~grenier\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=431"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}