Namespaces
namespace	tree

Classes
class	AbstractImageReader
	Abstract image reader. More...

class	DicomImageReader
	Concrete image reader for DICOM images. More...

class	DicomImageScanner
	Concrete image reader for DICOM images. More...

struct	OutputAttr
	Central controler of the gimmick application. More...

class	Gimmick

class	ImageExtent
	Class used to represent the actual state of the image selected and to perform comparisons on its values. More...

struct	OutStrGimmick

class	GimmickView
	Abstract class that handles views, attributes and previews (GUI) for Gimmick. More...

class	ImagePointerHolder

class	ImageReader
	Generic image reader which uses all the specific concrete image reader of the lib (tif, jpg, dicom, ...) More...

class	IndexedHeap
	Indexed priority queues handled by binary trees. More...

class	Listener

class	ThreadedImageReader

class	MultiThreadImageReaderUser

class	MultiThreadImageReader
	Class that allows parallel lectures of several images. More...

class	OutputModel

class	PACSConnection

class	Settings

class	SimpleView

class	SQLiteTreeHandler
	Concrete TreeHandler which manages a Tree stored in a sqlite database. More...

class	AddList
	Represents the list of currently added files. More...

class	RemoveList
	Represents the list of currently removed files. More...

class	Synchronizer
	In charge of the synchronization of the database and the disk state. More...

class	TimestampDatabaseHandler
	Concrete TreeHandler which manages a Tree stored in a sqlite database. More...

class	TreeHandler
	Abstract class which 'handles' a Tree structure. More...

class	TreeHandlerImageAdder
	Object which can add images files to a TreeHandler. Is able to parse (recursively) a part of a filesystem to look for known images and load their attributes in order to add the images to a Tree (submission via a TreeHandler::AddBranch) More...

class	TreeView
	Abstract class that handles the view of a Tree through its TreeHandler. More...

struct	Ultrasonix_header

class	UltrasonixImageReader
	Concrete image reader for ultrasonix 'rf' files. More...

class	VtkImageReader
	Concrete image reader based on a vtkImageReader2. More...

class	WxAnySimpleDlg
	Simple Wxwidgets interface to select file(s) or directory or from creaImageIO database to display. More...

class	WxAttributeSelectionPanel

class	WxCustomizeConfigPanel

class	WxDescriptorPanel

class	WxDumpPanel
	Display all dicom tags from a given DICOM file. More...

class	WxEditFieldsPanel

class	WxExportDlg

class	WxGimmickFrame

class	WxGimmickPanel

class	WxGimmickReaderDialog

class	WxGimmickTools

class	WxGimmickView
	Concrete derivative of GimmickView which implements a wxWidgets-based view. More...

class	WxListenerPanel

class	WxOutputDlg

class	WxPACSConnectionPanel

class	WxSimpleDlg
	Simple Wxwidgets interface to select file(s) or directory or from creaImageIO database to display. More...

struct	ItemData
	Data stored by the list items. More...

class	WxTreeView
	Abstract class that handles the view of a Tree through its TreeHandler. More...

class	RemoveAlertDlg

class	WxViewerPlayer

class	WxViewer

Typedefs
typedef std::map< std::string, std::string >	mapInfoDicom

Enumerations
enum	{ TOOL_ADDFILES_ID = 1, TOOL_ADDDIR_ID = 2, TOOL_ADDDATABASE_ID = 3, TOOL_REMOVE_ID = 4, TOOL_SYNCHRONIZE_ID = 5, TOOL_HELP_ID = 6, TOOL_SETTINGS_ID = 7, TOOL_TOOLS_ID = 8, TOOL_CREATEDB_ID = 9, TOOL_PACS_ID = 10 }

enum	icon_id { Icon_create_database, Icon_accept, Icon_add, Icon_folder_down, Icon_page_down, Icon_database_add, Icon_remove, Icon_synchronize, Icon_help, Icon_settings, Icon_tools }

Functions
std::string	irclean (const std::string &str)

bool	GimmickReaderDialog (std::vector< vtkImageData * > &images, const std::string i_namedescp, const std::string i_namedb="Local Database", const std::string &title="Select images", int posx=0, int posy=0, int sizex=1200, int sizey=800, int image_min_type=2, int image_max_type=3, int image_out_dim=2, int nb_threads=1)
	Pops up a WxGimmickReaderDialog returns true if the user clicked 'Ok', false if 'Cancel' and fills the vector of images. More...

template<class T , class C , class I >
std::ostream &	operator<< (std::ostream &, const IndexedHeap< T, C, I > &)

template<class T , class CT , class IT >
std::ostream &	operator<< (std::ostream &s, const IndexedHeap< T, CT, IT > &t)

char *	format_sql (const std::string &s)

void	SQLformat (std::string i_str, std::string &o_str)

void	RegisterGimmickMessageTypes ()

void	SetGimmickMessageLevel (int l)

void	SetGimmickDebugMessageLevel (int l)

void	deleteGimmickDebugMessage ()

bool	ReadHeader (FILE *Ultrasonix_file, Ultrasonix_header &h)

void	SplitExtensionsString (const std::string &str, const std::string &delimiters, std::vector< std::string > &tokens)

template<typename TImage >
class __declspec(dllexport) WxISimpleDlg	~WxISimpleDlg ()
	Simple Wxwidgets interface to select file(s) or directory or from creaImageIO database to display. More...

void	setExts (std::vector< std::string >)

void	OnReadFile (wxCommandEvent &event)
	Callback to read file(s) More...

void	OnReadDirectory (wxCommandEvent &event)
	Callback to read directory, no recursive. More...

void	OnReadGimmick (wxCommandEvent &event)
	Callback to select from creaImageIO database. More...

std::vector< vtkImageData * >	getVtkImagesSelected ()
	return a vtkImageData vector of selected images, if available More...

std::vector< typename TImage::Pointer >	getImagesSelected ()
	return a itkImage vector of selected images, if available More...

wxString	getInfoImage ()

void	split4Din3Dvtk (const std::string &i_dir)

void	split3Din3Dvtk ()

void	set (bool i_dicom)

std::vector< boost::any > &	getAnyImages ()

void	readImg (const std::string &i_name)

void	readDicomImg (const std::vector< std::string > &i_names)

Variables
const int	ID_COMBO = 180

const int	icon_number = 11

std::vector< boost::any >	m_AnyImages

std::vector< std::string >	m_exts

std::string	namedescp

std::string	namedb

wxString	infoimage

bool	m_dicom

SimpleView	m_view
	interface to read data More...

std::vector< typename TImage::Pointer >	m_Iresults

std::vector< vtkImageData * >	m_Vresults

Typedef Documentation

typedef std::map<std::string, std::string> creaImageIO::mapInfoDicom

Definition at line 63 of file creaImageIOGimmickView.h.

Enumeration Type Documentation

anonymous enum

Enumerator
TOOL_ADDFILES_ID
TOOL_ADDDIR_ID
TOOL_ADDDATABASE_ID
TOOL_REMOVE_ID
TOOL_SYNCHRONIZE_ID
TOOL_HELP_ID
TOOL_SETTINGS_ID
TOOL_TOOLS_ID
TOOL_CREATEDB_ID
TOOL_PACS_ID

Definition at line 79 of file creaImageIOWxGimmickView.cpp.

     {
         TOOL_ADDFILES_ID    = 1,
         TOOL_ADDDIR_ID      = 2,
         TOOL_ADDDATABASE_ID = 3,
         TOOL_REMOVE_ID      = 4,
         TOOL_SYNCHRONIZE_ID = 5,
         TOOL_HELP_ID        = 6,
         TOOL_SETTINGS_ID    = 7,
         TOOL_TOOLS_ID       = 8,
         TOOL_CREATEDB_ID    = 9,
         TOOL_PACS_ID        = 10
     };

enum creaImageIO::icon_id

Enumerator
Icon_create_database
Icon_accept
Icon_add
Icon_folder_down
Icon_page_down
Icon_database_add
Icon_remove
Icon_synchronize
Icon_help
Icon_settings
Icon_tools

Definition at line 98 of file creaImageIOWxGimmickView.cpp.

     {
       Icon_create_database,
       Icon_accept,
       Icon_add,
       Icon_folder_down,
       Icon_page_down,
       Icon_database_add,
       Icon_remove,
       Icon_synchronize,
       Icon_help,
       Icon_settings,
       Icon_tools
     }

Function Documentation

void creaImageIO::deleteGimmickDebugMessage ( )

inline

Definition at line 76 of file creaImageIOSystem.h.

         {
                 delete crea::MessageManager::GetInstance();
         }

char* creaImageIO::format_sql ( const std::string & s )

Definition at line 218 of file creaImageIOSQLiteTreeHandler.cpp.

   { 
     return sqlite3_mprintf("%q",s.c_str());
   }

std::vector<boost::any>& creaImageIO::getAnyImages ( )

Definition at line 80 of file creaImageIOWxIsimpleDlg.h.

References m_AnyImages.

80 { return m_AnyImages;}

std::vector<typename TImage::Pointer> creaImageIO::getImagesSelected ( )

return a itkImage vector of selected images, if available

wxString creaImageIO::getInfoImage ( )

std::vector<vtkImageData*> creaImageIO::getVtkImagesSelected ( )

return a vtkImageData vector of selected images, if available

Definition at line 69 of file creaImageIOWxIsimpleDlg.h.

References m_Vresults.

69 {return m_Vresults;}

std::string creaImageIO::irclean ( const std::string & str )

Definition at line 110 of file creaImageIODicomImageReader.cpp.

Referenced by creaImageIO::DicomImageReader::ReadAttributes(), and creaImageIO::DicomImageReader::ReadAttributes2().

   {
           if(str.size() > 0)
           {
                 if (str == "GDCM::Unfound") 
                   {
                 return "";
                   }
                 if (str[str.size()-1]==' ')
                   {
                 return irclean(str.substr(0,str.size()-1));
                   }
                 if (str[str.size()-1]==0)
                   {
                 return irclean(str.substr(0,str.size()-1));
                   }
           }
     
     return str;
   }

Here is the caller graph for this function:

void creaImageIO::OnReadDirectory ( wxCommandEvent & event )

Callback to read directory, no recursive.

void creaImageIO::OnReadFile ( wxCommandEvent & event )

Callback to read file(s)

void creaImageIO::OnReadGimmick ( wxCommandEvent & event )

Callback to select from creaImageIO database.

template<class T , class CT , class IT >

std::ostream& creaImageIO::operator<<	(	std::ostream &	s,
		const IndexedHeap< T, CT, IT > &	t
	)

Definition at line 38 of file creaImageIOIndexedHeap.h.

{

template<class T , class C , class I >

std::ostream& creaImageIO::operator<<	(	std::ostream &	,
		const IndexedHeap< T, C, I > &
	)

void creaImageIO::readDicomImg ( const std::vector< std::string > & i_names )

private

bool creaImageIO::ReadHeader	(	FILE *	Ultrasonix_file,
		Ultrasonix_header &	h
	)

Definition at line 69 of file creaImageIOUltrasonixImageReader.cpp.

References creaImageIO::Ultrasonix_header::frame, creaImageIO::Ultrasonix_header::frequency, HEADER_SIZE, creaImageIO::Ultrasonix_header::height, creaImageIO::Ultrasonix_header::samplingRate, creaImageIO::Ultrasonix_header::type, and creaImageIO::Ultrasonix_header::width.

Referenced by creaImageIO::UltrasonixImageReader::CanRead(), creaImageIO::UltrasonixImageReader::ReadAttributes(), and creaImageIO::UltrasonixImageReader::ReadImage().

   {
     //int *header=(int*)malloc(sizeof(int)*HEADER_SIZE);
     int header[HEADER_SIZE];
     fread(header, sizeof(int), HEADER_SIZE, Ultrasonix_file);
     if (ferror(Ultrasonix_file))
         return false;
     h.type         = header[1];
     h.frame        = header[2];
     h.height       = header[3];
     h.width        = header[4];
     h.frequency    = header[14];
     h.samplingRate = header[15];
     //free(header);  
     return true;
   }

Here is the caller graph for this function:

void creaImageIO::readImg ( const std::string & i_name )

private

void creaImageIO::RegisterGimmickMessageTypes ( )

inline

Definition at line 50 of file creaImageIOSystem.h.

Referenced by creaImageIO::Gimmick::Gimmick(), SetGimmickDebugMessageLevel(), and SetGimmickMessageLevel().

   {
     static bool first_time = true;
     if (first_time)
       {
         crea::MessageManager::RegisterMessageType("Gimmick!",
                                                   "Gimmick",1);
         crea::MessageManager::RegisterMessageType("Gimmick! DEBUG",
                                                   "Gimmick",0);
         first_time = false;
       }
   }

Here is the caller graph for this function:

void creaImageIO::set ( bool i_dicom )

Definition at line 79 of file creaImageIOWxIsimpleDlg.h.

References m_dicom.

79 {m_dicom= i_dicom;}

void creaImageIO::setExts ( std::vector< std::string > )

void creaImageIO::SetGimmickDebugMessageLevel ( int l )

inline

Definition at line 69 of file creaImageIOSystem.h.

References RegisterGimmickMessageTypes().

Referenced by myApp::OnInit(), and creaImageIO::Gimmick::SetDebugMessageLevel().

   {
     RegisterGimmickMessageTypes();                      
     crea::MessageManager::SetMessageLevel("Gimmick! DEBUG",l);
   }

Here is the call graph for this function:

Here is the caller graph for this function:

void creaImageIO::SetGimmickMessageLevel ( int l )

inline

Definition at line 63 of file creaImageIOSystem.h.

References RegisterGimmickMessageTypes().

Referenced by myApp::OnInit(), and creaImageIO::Gimmick::SetMessageLevel().

   {
     RegisterGimmickMessageTypes();                      
     crea::MessageManager::SetMessageLevel("Gimmick!",l);
   }

Here is the call graph for this function:

Here is the caller graph for this function:

void creaImageIO::split3Din3Dvtk ( )

void creaImageIO::split4Din3Dvtk ( const std::string & i_dir )

void creaImageIO::SplitExtensionsString	(	const std::string &	str,
		const std::string &	delimiters,
		std::vector< std::string > &	tokens
	)

Definition at line 162 of file creaImageIOVtkImageReader.cpp.

Referenced by creaImageIO::VtkImageReader::PushBackExtensions().

   {
     // Skip delimiters at beginning.
     std::string::size_type lastPos = str.find_first_not_of(delimiters, 0);
     // Find first delimiter.
     std::string::size_type pos     = str.find_first_of(delimiters, lastPos);
     
     while (std::string::npos != pos || std::string::npos != lastPos)
       {
         // Found a token, add it to the vector.
         // SPECIFIC : REMOVE INITIAL DOT (lastPos + 1)
         tokens.push_back(str.substr(lastPos+1, pos - lastPos));
         // Skip delimiters.  Note the "not_of"
         lastPos = str.find_first_not_of(delimiters, pos);
         // Find next delimiter
         pos = str.find_first_of(delimiters, lastPos);
       }
     
     }

Here is the caller graph for this function:

void creaImageIO::SQLformat	(	std::string	i_str,
		std::string &	o_str
	)

Definition at line 568 of file creaImageIOSQLiteTreeHandler.cpp.

Referenced by creaImageIO::SQLiteTreeHandler::SQLAppendAttributesValues().

   {
                 // quote must be doubled
                 boost::algorithm::replace_all(i_str,"'","''");
                 // Found strange strings which contained NULL char INSIDE string 
                 int i,size=(int)i_str.size();
                 for (i=0;i<size;++i) 
                 {
                         if (i_str[i]==0) 
                         {
                                 i_str = i_str.substr(0,i);
                                 break;
                           }
                 }
                 o_str = i_str;
   }