vtkOtsuImageData Class Reference

#include <vtkOtsuImageData.h>

List of all members.

Public Member Functions
	vtkOtsuImageData ()
virtual	~vtkOtsuImageData ()
int	calculateOptimalThreshold (vtkImageData *volume)
Protected Attributes
FILE *	logger
Private Attributes
int *	H
double *	SI
double *	P
vtkImageData *	volume

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Detailed Description

Definition at line 7 of file vtkOtsuImageData.h.

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Constructor & Destructor Documentation

vtkOtsuImageData::vtkOtsuImageData

(

)

Definition at line 3 of file vtkOtsuImageData.cxx.

References P, and volume.

                                           {
                 volume = NULL;
                 P = NULL;

        }

vtkOtsuImageData::~vtkOtsuImageData

(

)

[virtual]

Definition at line 9 of file vtkOtsuImageData.cxx.

                                            {
                
        }

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Member Function Documentation

int vtkOtsuImageData::calculateOptimalThreshold

(

vtkImageData *

volume

)

Definition at line 13 of file vtkOtsuImageData.cxx.

References H, P, SI, and volume.

                                                                        {
                
                int extent[6];
                int static TAM = 10000;
                
                
                this->volume = voi; //VOI
                this->volume->GetExtent(extent);

                printf("otsu: extent = x (%d %d) y (%d %d) z(%d %d)\n",extent[0],extent[1],extent[2],extent[3],extent[4],extent[5]);

                                        
                double valor = 0.0;
                int index = 0;
                int T = 0;
                int max=0;
                int voxelCount = 0;
        
                //1. Inicializacion
                this->H = new int[TAM];
                this->P = new double[TAM];
                this->SI = new double[TAM];
                for (index = 0; index <TAM; index++){
                        this->H[index] = 0;
                        this->P[index] = 0.0;   //probabilidad acumulada
                        this->SI[index] = 0.0;
                }
                
                //2. Calcular el Histograma
                
                int i, j, k;
                for(i=extent[0];i<=extent[1];i++){
                        for(j=extent[2];j<=extent[3];j++){
                                for(k=extent[4];k<=extent[5];k++){
                                        
                                                                                
                                        valor = this->volume->GetScalarComponentAsDouble(i,j,k,0);
                                        if (valor > max){
                                                max = (int)valor;
                                        }
                                        
                                        index  = (int)valor;
                                        this->H[index]++;
                                        voxelCount++;
                                        
                                }
                        }
                }

                printf("otsu: voxelCount = %d\n",voxelCount);
                
                //3. Normalizacion de la funcion P
                for(index=0;index<=max;index++){
                        this->P[index] = (double)this->H[index] / (double)voxelCount;
                        //printf("H[%d] = %d\n",index, H[index]);
                }




                //FILE *logger = NULL;
        
                //if ((logger = freopen("c:\\Diego\\Andes\\Tesis\\ITK\\FM_3D\\bin\\Debug\\thotsu.txt","w", stdout)) == NULL)
                        //exit(-1);

                //printf("THRESHOLD; VARIANZA INTERCLASE\n");


                //4. Recorrer los diferentes niveles de intensidad

                for(T=0;T<=max;T++){

                        //printf("T= %d, ",T);
                        
                        //4.1 Calcular las probabilidades acumuladas de las clases A y B
                        double Q1 = 0.0;
                        double Q2 = 0.0;
                        for(index=0;index<=max;index++){
                                if (index < T){
                                        Q1 = Q1 + this->P[index];
                                }
                                else{
                                        Q2 = Q2 + this->P[index];
                                }
                        }

                        //4.2 Calcular las medias de las clases A y B
                        double U1 = 0.0;
                        double U2 = 0.0;
                        for (index=0;index<=max;index++){
                                if (index < T){
                                        U1 = U1 + ((double)(index * this->P[index])/(double)Q1);
                                }
                                else{
                                        U2 = U2 + ((double)(index * this->P[index])/(double)Q2);
                                }
                        }

                        
                        //4.3 Calcular las varianzas individuales
                        double S1 = 0.0;
                        double S2 = 0.0;
                        for (index=0;index<=max;index++){
                                if (index < T){
                                        S1 = S1 + ((index - U1)*(index - U1)*(this->P[index]/(double)Q1));
                                }
                                else{
                                        S2 = S2 + ((index - U2)*(index - U2)*(this->P[index]/(double)Q2));
                                }
                        }

                        //4.4 Calcular SI: La varianza intraclases y seleccionar el valor minimo
                        this->SI[T] = Q1*S1 + Q2*S2;
                        //printf("VI = %.2f\n",SI[T]);
                }
                
            int optimalThreshold        = 0;
                double optimalCriteria  = VTK_LARGE_FLOAT;

        

                for (int index2=0;index2<=max;index2++){
                        
                        if (SI[index2] < optimalCriteria){
                                optimalCriteria = SI[index2];
                                optimalThreshold = index2;
                                //printf("ENTRO %d %d\n",index2,optimalThreshold);
                        }
                        //printf("SI[%d] = %.2f, optimo = %d\n",index2,SI[index2],optimalThreshold);
                }
                //fclose(logger);
                //logger = NULL;

                printf(">>>%d<<<\n", optimalThreshold);
        
                return optimalThreshold;
        }

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Member Data Documentation

int* vtkOtsuImageData::H [private]

Definition at line 19 of file vtkOtsuImageData.h.

Referenced by calculateOptimalThreshold().

FILE* vtkOtsuImageData::logger [protected]

Definition at line 17 of file vtkOtsuImageData.h.

double* vtkOtsuImageData::P [private]

Definition at line 21 of file vtkOtsuImageData.h.

Referenced by calculateOptimalThreshold(), and vtkOtsuImageData().

double* vtkOtsuImageData::SI [private]

Definition at line 20 of file vtkOtsuImageData.h.

Referenced by calculateOptimalThreshold().

vtkImageData* vtkOtsuImageData::volume [private]

Definition at line 23 of file vtkOtsuImageData.h.

Referenced by calculateOptimalThreshold(), and vtkOtsuImageData().

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The documentation for this class was generated from the following files:

• /home/davila/Creatis/creaMaracasVisu/lib/maracasVisuLib/src/kernel/include/vtkOtsuImageData.h
• /home/davila/Creatis/creaMaracasVisu/lib/maracasVisuLib/src/kernel/include/vtkOtsuImageData.cxx