marParameters.cpp

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/*=========================================================================

 Program:   wxMaracas
 Module:    $RCSfile: marParameters.cpp,v $
 Language:  C++
 Date:      $Date: 2009/05/14 13:54:43 $
 Version:   $Revision: 1.2 $
 
  Copyright: (c) 2002, 2003
  License:
  
   This software is distributed WITHOUT ANY WARRANTY; without even 
   the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
   PURPOSE.  See the above copyright notice for more information.
   
=========================================================================*/

#include "marParameters.h"
#include <math.h>
#include <wx/log.h>

static char* BoolParamNames[] = {
        // PS ->     "e_debug_window_visible"  ,
        // PS ->        "e_debug_console_visible"     ,
        // PS ->        "e_calculate_mip_default"    ,
        // PS ->        "e_choose_all_slices_default" ,
        "e_debug_isocontour"          ,
        "e_debug_diameters"           ,
        "e_debug_fill_area"           ,
        "e_invest_slice_order"           ,
        // PS ->        "e_show_cell"                 ,
        // PS ->        "e_show_int_cell"
};
static char* DoubleParamNames[] = {
    "e_gravity_distance"              ,
        "e_axis_discret_step"             ,
        "e_distance_to_maximum_intensity" ,
        "e_cell_coeficient"               ,
        "e_flexion_coeficient"            ,
        "e_tension_coeficient"            ,
        "e_voxel_x_dimension"            ,
        "e_voxel_y_dimension"             ,
        "e_voxel_z_dimension"             ,
        "e_scale"                         ,
        // PS ->        "e_sampling"                      ,
        "e_threshold_isocontour"          ,
        "e_threshold_snake_isocontour"    ,
        "e_sigma"                         ,
        // PS ->        "e_gradient_coeficient"           ,
        // PS ->        "e_extern_coeficient"             ,
        // PS ->        "e_ballon_coeficient"             ,
        // PS ->        "e_back_color_3D_r"               ,
        // PS ->        "e_back_color_3D_g"               ,
        // PS ->        "e_back_color_3D_b"               ,
        // PS ->        "e_axis_color_r"                  ,
        // PS ->        "e_axis_color_g"                  ,
        // PS ->        "e_axis_color_b"
    "e_RescaleIntercept"          ,
    "e_RescaleSlope"              ,
};
static char* IntParamNames[] = {
    "e_roi_dimension"                     ,
        "e_step"                                  ,
        "e_step_coeficient"                       ,
        "e_mass_power"                            ,
        "e_algorithm_type"                        ,
        "e_mask_size"                             ,
        "e_number_of_points_for_snake"            ,
        "e_quantification_type"                   ,
        "e_stenosis_type"                         ,
        // PS ->        "e_number_of_iterations_snake_isocontour" ,
        // PS ->        "e_number_of_iterations_snake_deriche"    ,
        "e_voxel_type"                            ,
        // PS ->        "e_coef_cell_max_int"
};
static char* StringParamNames[] = {
        "e_installation_directory" ,
        "e_dicom_images_directory"
};

// -------------------------------------------------------------------------
double marParameters::getVoxelSize( )
{
/* OLD CODE:

 double ret = 1.0;
 
  if( _intValues[ e_voxel_type ] == VOX_TYPE_MINIMUM ) {
  
   ret = _doubleValues[ e_voxel_x_dimension ];
   ret = GTM_MIN( _doubleValues[ e_voxel_y_dimension ], ret );
   ret = GTM_MIN( _doubleValues[ e_voxel_z_dimension ], ret );
   
    } // fi
    return( ret );
        */


//EEDx1 
    double ret = 1.0;
    //Juan Carrillo 03/06/2005
        if( _intValues[ e_voxel_type ] == VOX_TYPE_MINIMUM ) {
                
                ret = _doubleValues[ e_voxel_x_dimension ];
                ret = ( _doubleValues[ e_voxel_y_dimension ] < ret )?
                        _doubleValues[ e_voxel_y_dimension ]: ret;
                ret = ( _doubleValues[ e_voxel_z_dimension ] < ret )?
                        _doubleValues[ e_voxel_z_dimension ]: ret;
    } // fi
    return( ret*1 );
}

// -------------------------------------------------------------------------
double marParameters::getDimIma( )
{
        double scale = _doubleValues[ e_scale ];
        double roiDim = ( double )( _intValues[ e_roi_dimension ] );
    return( scale * roiDim );
}

// -------------------------------------------------------------------------
int marParameters::getSizeIma( )
{
    //  TODO : There should be a formal way to calculate a good image size.
    return( 128 ); 
}

// -------------------------------------------------------------------------
double marParameters::getImaRatio( )
{
    return( getDimIma( ) / ( double )( getSizeIma( ) ) );
}

// -------------------------------------------------------------------------
void marParameters::setROIStep( double width )
{
    _intValues[ e_roi_dimension ] =
                ( int )ceil( _doubleValues[ e_cell_coeficient ] * width );
    _intValues[ e_step ] =
                ( int )floor( ( double )_intValues[ e_roi_dimension ] /
                      ( double )_intValues[ e_step_coeficient ] );
}


// -------------------------------------------------------------------------
float marParameters::getRescaleSlope(){
        return (float) _doubleValues[ e_RescaleSlope ];
}
// -------------------------------------------------------------------------
float marParameters::getRescaleIntercept(){
        return (float) _doubleValues[ e_RescaleIntercept ];
}
// -------------------------------------------------------------------------
void marParameters::setRescaleSlope(float slope){
        _doubleValues[ e_RescaleSlope ]= slope;
}
// -------------------------------------------------------------------------
void marParameters::setRescaleIntercept(float intercept){
        _doubleValues[ e_RescaleIntercept ]= intercept;
}
// -------------------------------------------------------------------------
void marParameters::copyFrom( const marParameters& from )
{
    int i;
        
    memcpy( _boolValues, from._boolValues, e_bool_cont * sizeof( bool ) );
    memcpy( _intValues, from._intValues, e_int_cont * sizeof( int ) );
    memcpy( _doubleValues,
                from._doubleValues,
                e_double_cont * sizeof( double ) );
        
     for( i = 0; i < e_string_cont; i++ )
                _stringValues[ i ] = from._stringValues[ i ];
}

// -------------------------------------------------------------------------
void marParameters::reset( )
{
        // PS ->     _boolValues[ e_debug_window_visible ]      = false;
        // PS ->     _boolValues[ e_debug_console_visible ]     = false;
        // PS ->     _boolValues[ e_calculate_mip_default ]     = false;
        // PS ->     _boolValues[ e_choose_all_slices_default ] = true;
    _boolValues[ e_debug_isocontour ]          = true;
    _boolValues[ e_debug_diameters ]           = true;
    _boolValues[ e_debug_fill_area ]           = false;
    _boolValues[ e_invest_slice_order ]            = false;
        // PS ->     _boolValues[ e_show_cell ]                 = true;
        // PS ->     _boolValues[ e_show_int_cell ]             = true;
        
    _doubleValues[ e_gravity_distance ]              = 1.0;
    _doubleValues[ e_axis_discret_step ]             = 2.0;
    _doubleValues[ e_distance_to_maximum_intensity ] = 0.0;
    _doubleValues[ e_cell_coeficient ]               = 1.2;
    _doubleValues[ e_flexion_coeficient ]            = 0.1;
    _doubleValues[ e_tension_coeficient ]            = 0.3;
    _doubleValues[ e_voxel_x_dimension ]             = 1.0;
    _doubleValues[ e_voxel_y_dimension ]             = 1.0;
    _doubleValues[ e_voxel_z_dimension ]             = 1.0;
    _doubleValues[ e_scale ]                         = 4.0;
        // PS ->     _doubleValues[ e_sampling ]                      = 4.0;
    _doubleValues[ e_threshold_isocontour ]          = 40.0;
    _doubleValues[ e_threshold_snake_isocontour ]    = 40.0;
    _doubleValues[ e_sigma ]                         = 0.1;
    _doubleValues[ e_RescaleIntercept ]              = 0;
    _doubleValues[ e_RescaleSlope ]                  = 1;
        // PS ->     _doubleValues[ e_extern_coeficient ]             = 0.3;
        // PS ->     _doubleValues[ e_gradient_coeficient ]           = 0.3;
        // PS ->     _doubleValues[ e_ballon_coeficient ]             = 0.02;
        // PS ->     _doubleValues[ e_back_color_3D_r ]               = 0.0;
        // PS ->     _doubleValues[ e_back_color_3D_g ]               = 0.0;
        // PS ->     _doubleValues[ e_back_color_3D_b ]               = 0.0;
        // PS ->     _doubleValues[ e_axis_color_r ]                  = 1.0;
        // PS ->     _doubleValues[ e_axis_color_g ]                  = 0.0;
        // PS ->     _doubleValues[ e_axis_color_b ]                  = 0.0;
        
        
    _intValues[ e_roi_dimension ]                         = 10;
    _intValues[ e_step ]                                  = 3;
    _intValues[ e_step_coeficient ]                       = 2;
    _intValues[ e_mass_power ]                            = 2;
    _intValues[ e_algorithm_type ]                        = ISOCONTOURS;
    _intValues[ e_mask_size ]                             = 5;
    _intValues[ e_number_of_points_for_snake ]            = 20;
    _intValues[ e_quantification_type ]                   = TYPE_AREA;
    _intValues[ e_stenosis_type ]                         = TYPE_AREA;
        // PS ->     _intValues[ e_number_of_iterations_snake_isocontour ] = 5;
        // PS ->     _intValues[ e_number_of_iterations_snake_deriche ]    = 700;


    _intValues[ e_voxel_type ]                            = VOX_TYPE_NORMAL;


        // PS ->     _intValues[ e_coef_cell_max_int ]                     = 2;
        
     _stringValues[ e_installation_directory ]  = _T("NO_DIRECTORY");
     _stringValues[ e_dicom_images_directory ] = _T("NO_DIRECTORY");
        
         //MAZV CT compatibility
        _contourThresh          = 10;
        _lumenPercentage        = 86;
        _calcPercentage         = 90;
        _standardDeviation      = 3;
        _radius                 = 3;
        //end MAZV CT compatibility

}

// -------------------------------------------------------------------------
bool marParameters::save( std::ofstream& os )
{
    int i, s;
        try 
        {
                os.write( ( const char* )_boolValues, e_bool_cont * sizeof( bool ) );
                os.write( ( char* )_intValues, e_int_cont * sizeof( int ) );
                os.write( ( const char* )_doubleValues, e_double_cont * sizeof( double ) );
                for( i = 0; i < e_string_cont; i++ ) {
                        s = _stringValues[ i ].length( );
                        os.write( ( const char* )&s, sizeof( int ) );
                        os.write( ( const char* )_stringValues[ i ].c_str( ), s * sizeof( char ) );
                } // rof
                return( true );
        }
        catch (...)
        {
                return(false);
        }
    
}

// -------------------------------------------------------------------------
bool marParameters::load( std::ifstream& is )
{
        int i, s;
        try
        {
                is.read( ( char* )_boolValues, e_bool_cont * sizeof( bool ) );
                is.read( ( char* )_intValues, e_int_cont * sizeof( int ) );
                is.read( ( char* )_doubleValues, e_double_cont * sizeof( double ) );
                for( i = 0; i < e_string_cont; i++ )
                {
                        is.read( ( char* )&s, sizeof( int ) );
                        _stringValues[ i ].resize( s );
                        is.read( ( char* )_stringValues[ i ].c_str( ), s * sizeof( char ) );
                } // rof
                return( true ); 
        }
        catch (...)
        {
                
                return(false);
        }
        
}

// -------------------------------------------------------------------------
bool marParameters::save( wxString& nw )
{
    std::ofstream os( (const char*)nw.mb_str( ) ,std::ios::out |std::ios::binary );
        
//EEDxx2.4 DEBuG
//      wxLogDebug("Saving parameters to file " + nw);
        
    if( os==NULL ) 
        {
                wxString errorMsg;
                errorMsg= _T("Error : Cannot open file ")+nw+_T(" to save parameters");
//EEDxx2.4 DEBuG
//              wxLogDebug(errorMsg);
                return( false );
        }
        if (save( os ))
        {
                os.close( );
//EEDxx2.4 DEBuG
//              wxLogDebug("Parameters saved to file " + nw);
                return( true );
        }
        else
        {
                os.close( );
//EEDxx2.4 DEBuG
//              wxLogDebug("Error : Cannot save parameters to file "+nw);
                return(false);
        }
}

// -------------------------------------------------------------------------
bool marParameters::load( wxString& nr )
{
    std::ifstream is( (const char*)nr.mb_str( ),std::ios::binary|std::ios::in);
        
//EEDxx2.4 DEBuG
//      wxLogDebug("Laoding parameters from file " + nr);
    if( is==NULL ) 
        {
                wxString errorMsg;
                errorMsg= _T("Error : Cannot open file ")+nr+_T(" to load parameters");
//EEDxx2.4 DEBuG
//              wxLogDebug(errorMsg);
                return( false );
        }
        if (load( is ))
        {
                is.close( );
//EEDxx2.4 DEBuG
//              wxLogDebug("Parameters loaded from file " + nr);
                return( true );
        }
        else
        {
                is.close( );
//EEDxx2.4 DEBuG
//              wxLogDebug("Error : Cannot load parameters from file "+nr+": file may be corrupted");
                return(false);
        }
}

// ----------------------------------------------------------------------------
wxArrayString marParameters::getRelationalArray( )
{
    // Allocate memory for pairs of data plus one end NULL array
        //    wxStringList ret;
    wxArrayString ret;
    wxString str;
    int i, j;
        
    for( i = 0, j = 0; i < e_bool_cont; i++, j += 2 ) {
                
                ret.Add( wxString( BoolParamNames[ i ], wxConvUTF8)  );
                str.Printf( _T("%d"), ( _boolValues[ i ] )? 1: 0 );
                ret.Add( str );
                
    } // rof
    for( i = 0; i < e_double_cont; i++, j += 2 ) {
                
                ret.Add( wxString( DoubleParamNames[ i ], wxConvUTF8)  );
                str.Printf( _T("%f"), _doubleValues[ i ] );
                ret.Add( str );
                
    } // rof
    for( i = 0; i < e_int_cont; i++, j += 2 ) {
                
                ret.Add( wxString( IntParamNames[ i ], wxConvUTF8) );
                str.Printf( _T("%d"), _intValues[ i ] );
                ret.Add( str );
                
    } // rof

     for( i = 0; i < e_string_cont; i++, j += 2 ) {
                ret.Add( wxString( StringParamNames[ i ], wxConvUTF8)  );
                ret.Add( wxString( _stringValues[ i ].c_str( ), wxConvUTF8 ) );
     } // rof


    return( ret );
        
}

// ----------------------------------------------------------------------------
//void marParameters::setRelationalArray( wxStringList& arr )
void marParameters::setRelationalArray( wxArrayString& arr )
{
        
    int i = 0, j;
    bool cont;
        
        //    while( arr[ i ] != NULL ) {
    while( !arr.IsEmpty() ) {
                
                cont = true;
                for( j = 0; j < e_string_cont && cont; j++ ) {
                        if( strcmp( StringParamNames[ j ], (const char*)arr[ i ].mb_str() ) == 0 ) {
                                _stringValues[ j ] = ( wxString )arr[ i + 1 ];
                                cont = false;
                        } // fi
                } // rof
                for( j = 0; j < e_bool_cont && cont; j++ ) {
                        
                        if( strcmp( BoolParamNames[ j ], (const char*)arr[ i ].mb_str() ) == 0 ) {
                                
                                _boolValues[ j ] = ( strcmp( (const char*)arr[ i + 1 ].mb_str(), "1" ) == 0 );
                                cont = false;
                                
                        } // fi
                        
                } // rof
                for( j = 0; j < e_int_cont && cont; j++ ) {
                        
                        if( strcmp( IntParamNames[ j ], (const char*)arr[ i ].mb_str() ) == 0 ) {
                                
                                _intValues[ j ] = atoi( (const char*)arr[ i + 1 ].mb_str() );
                                cont = false;
                                
                        } // fi
                        
                } // rof
                for( j = 0; j < e_double_cont && cont; j++ ) {
                        
                        if( strcmp( DoubleParamNames[ j ], (const char*)arr[ i ].mb_str() ) == 0 ) {
                                
                                ( ( wxString )arr[ i + 1 ] ).ToDouble( &_doubleValues[ j ] );
                                cont = false;
                                
                        } // fi
                        
                } // rof
                i += 2;
                
    } // fwhile
        
}


bool marParameters::getInvestSliceOrder(){
  return _boolValues[ e_invest_slice_order ];
}

//MAZV - Added for CT compatibility
// ----------------------------------------------------------------------------
int marParameters::getContourThresh() {
        return _contourThresh;
}

// ----------------------------------------------------------------------------
void marParameters::setContourThresh( int thresh ) {
        _contourThresh = thresh;
}

// ----------------------------------------------------------------------------
double marParameters::getStandardDeviation() {
        return _standardDeviation;
}

// ----------------------------------------------------------------------------
double marParameters::getRadius() {
        return _radius;
}

// ----------------------------------------------------------------------------
void marParameters::setStandardDeviation( double dev ) {
        _standardDeviation = dev;
}

// ----------------------------------------------------------------------------
void marParameters::setRadius( double rad ) {
        _radius = rad;
}

// ----------------------------------------------------------------------------
void marParameters::setLumenPercentage(int percentage) {
        _lumenPercentage = percentage;
}
// ----------------------------------------------------------------------------
void marParameters::setCalcPercentage(int percentage) {
        _calcPercentage = percentage;
}

// ----------------------------------------------------------------------------
int      marParameters::getLumenPercentage() {
        return _lumenPercentage;
}

// ----------------------------------------------------------------------------
int  marParameters::getCalcPercentage() {
        return _calcPercentage;
}
//MAZV end of addition
// eof - parameters.cxx