marSimpleDicom.h

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/*=========================================================================

 Program:   wxMaracas
 Module:    $RCSfile: marSimpleDicom.h,v $
 Language:  C++
 Date:      $Date: 2009/05/14 13:55:08 $
 Version:   $Revision: 1.1 $
 
  Copyright: (c) 2002, 2003
  License:
  
   This software is distributed WITHOUT ANY WARRANTY; without even 
   the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
   PURPOSE.  See the above copyright notice for more information.
   
=========================================================================*/

#ifndef __MAR__KERNEL__MARSIMPLEDICOM__HXX__
#define __MAR__KERNEL__MARSIMPLEDICOM__HXX__

#include "marDicomBase.h"

#include "volume.hxx"
#include <wx/string.h>
#include <wx/gauge.h>
// PS -> #include <gdcm.h>
// PS -> #include <gdcmHeaderHelper.h>
#include <vector>
// PS -> #include <gdcmElValSet.h>

typedef std::vector<wxArrayString> SerieInfo;  //DICOM info for each serie
// EED Borrame 
//class MAR_KERNEL_EXPORT marGdcmDicom : public marObject

class marSimpleDicom : public marFilesBase
{
public:
        
    enum DicomTags
    {
                ID_File_Name = 0                   ,
                        ID_SOP_Class_UID                   ,
                        ID_SOP_Instance_UID                ,
                        ID_Study_Date                      ,
                        ID_Series_Date                     ,
                        ID_Acquisition_Date                ,
                        ID_Image_Date                      ,
                        ID_Study_Time                      ,
                        ID_Series_Time                     ,
                        ID_Acquisition_Time                ,
                        ID_Image_Time                      ,
                        ID_Modality                        ,
                        ID_Manufacturer                    ,
                        ID_Institution_Name                ,
                        ID_Study_Description               ,
                        ID_Series_Description              ,
                        ID_Admitting_Diagnoses_Description ,
                        ID_Patient_Name                    ,
                        ID_Patient_ID                      ,
                        ID_Body_Part_Examined              ,
                        ID_Scanning_Sequence               ,
                        ID_Sequence_Variant                ,
                        ID_Scan_Options                    ,
                        ID_MR_Acquisition_Type             ,
                        ID_Sequence_Name                   ,
                        ID_Slice_Thickness                 ,
                        ID_Repetition_Time                 ,
                        ID_Echo_Time                       ,
                        ID_Inversion_Time                  ,
                        ID_Number_of_Averages              ,
                        ID_Imaging_Frequency               ,
                        ID_Imaged_Nucleus                  ,
                        ID_Echo_Number                     ,
                        ID_Magnetic_Field_Strength         ,
                        ID_Spacing_Between_Slices          ,
                        ID_Echo_Train_Length               ,
                        ID_Percent_Sampling                ,
                        ID_Percent_Phase_Field_of_View     ,
                        ID_Receiving_Coil                  ,
                        ID_Patient_Position                ,
                        ID_Study_Instance_UID              ,
                        ID_Series_Instance_UID             ,
                        ID_Study_ID                        ,
                        ID_Series_Number                   ,
                        ID_Acquisition_Number              ,
                        ID_Image_Number                    ,
                        ID_Patient_Orientation             ,
                        ID_Image_Position                  ,
                        ID_Image_Position_Patient          ,
                        ID_Image_Orientation               ,
                        ID_Image_Orientation_Patient       ,
                        ID_Location                        ,
                        ID_Frame_of_Reference_UID          ,
                        ID_Slice_Location                  ,
                        ID_Image_Comments                  ,
                        ID_Pixel_Spacing                   ,
                        ID_Window_Center                   ,
                        ID_Window_Width                    ,
                        ID_dicom_tags_count
    };
        
public:
        void SetVolumeData( int dimX,
                                                int dimY,
                                                int dimZ, 
                                float spacingX, 
                                                float spacingY, 
                                                float spacingZ, 
                                                float rescaleSlope,
                                                float rescaleIntercept,
                                                unsigned short * pixels);
        
    marSimpleDicom( marParameters* p = NULL );
        
    virtual ~marSimpleDicom( );
        
// PS ->     wxArrayString getStudyInfo( ) { return( m_DicomInfo[m_ActualStudy][0] ); }
// PS ->     int getNumberOfStudies( ) { return m_DicomInfo.size(); }
// PS ->     wxArrayString getSerieInfo( ) { return( m_DicomInfo[m_ActualStudy][m_ActualSerie] ); }
// PS ->     int getNumberOfSeries( ) { return m_DicomInfo[m_ActualStudy].size(); }
        
        
// PS ->     int getNumberOfFiles( )
// PS ->     {
// PS ->                return m_DicomInfo[m_ActualStudy][m_ActualSerie].GetCount();
// PS ->     }
        
        void SetInvestSliceOrder(bool investSliceOrder);

    void loadActualSerie(wxGauge* gauge );
        
// PS ->     wxArrayString getImageNumbers( )
// PS ->     {
// PS ->                wxArrayString imageNumbers;
// PS ->                std::list<gdcmHeaderHelper*> flist = helper->GetGdcmFileList();
// PS ->                for(std::list<gdcmHeaderHelper*>::iterator it = flist.begin(); 
// PS ->                it != flist.end(); it++ )
// PS ->                {
// PS ->                        imageNumbers.Add( wxString::Format("%d", (*it)->GetImageNumber()) );
// PS ->                }
// PS ->                return( imageNumbers );
// PS ->     }

        // PS ->     void loadVolume( bool force = false, wxGauge* gauge = NULL);
    void loadVolumeDXMM( bool force = false, wxGauge* gauge = NULL);
        
// PS ->        
// PS ->     bool setActualStudy( unsigned int studynumber )
// PS ->     {
// PS ->                m_ActualStudy = studynumber;
// PS ->                return true;
// PS ->     }
// PS ->     bool setActualSerie( unsigned int serienumber )
// PS ->     {
// PS ->                m_ActualSerie = serienumber;
// PS ->                return true;
// PS ->     }
// PS ->        
    void reset( );
    void copyFrom( const marObject& from );
        
    bool save( std::ofstream& os );
    bool load( std::ifstream& is );
        
// PS ->     void FillDicomInfo();
    
// PS ->     wxString GetPatientName()
// PS ->        {
// PS ->                return wxString( helper->GetGdcmHeader()->GetPubElValByNumber(0x0010,0x0010).c_str()).Trim();//0010 0010 PN PAT Patient Name
// PS ->        }
        
  private:
          
// PS ->          wxArrayString gdcmGetExamInfo( wxString directoryname );
          
          std::vector< SerieInfo > m_DicomInfo;
          unsigned int m_ActualStudy;
          unsigned int m_ActualSerie;
          
// PS ->          gdcmSerieHeaderHelper *helper;
          unsigned short * m_pSlicesPixels;
          int   m_nX, m_nY, m_nSlices;
          float m_PixelSpacingColumn,m_PixelSpacingRow,m_PixelSpacingSlice;
          float m_RescaleSlope, m_RescaleIntercept;
          bool  _investSliceOrder;
};

#endif // __MAR__KERNEL__MARSIMPLEDICOM__HXX__