Patrick Clarysse
Short Bio
Publications
Softwares
Contact

Patrick Clarysse received a PhD in 1991 from the Scientific and Technological University of Lille, France. Since 1992, he is with the French National Center for Scientific Research (CNRS) at CREATIS Lab, University of Lyon, CNRS UMR 5220, Inserm U1294, Lyon, France. Currently, he is Research Director and Deputy Director of CREATIS. His primary research interests are in the bioengineering and medical image analysis fields, including medical image processing workflows, multidimensional/multimodal image segmentation and registration, motion estimation and biomechanical modeling with applications to the 3D analysis and modeling of the heart function and thoracic structures. Patrick Clarysse has coauthored more than 150 papers in international journals and conferences, and coedited 3 books and 3 conference proceedings.

Selection of recent publications (supervised students are in bold)

  • N. Duchateau, M. Viallon, L. Petrusca, P. Clarysse, N. Mewton, L. Belle, and P. Croisille, "Pixel-wise statistical analysis of myocardial injury in STEMI patients with delayed enhancement MRI," Frontiers in Cardiovascular Medicine, vol. 10, 2023. Doi: 10.3389/fcvm.2023.1136760. JIF=3.6 (Q1), citations=.

  • W. A. Romero R, M. Viallon, J. Spaltenstein, L. Petrusca, O. Bernard, L. Belle, P. Clarysse, and P. Croisille, "CMRSegTools: An open-source software enabling reproducible research in segmentation of acute myocardial infarct in CMR images," PLOS ONE, vol. 17, no. 9, p. e0274491, 2022. Doi: 10.1371/journal.pone.0274491. JIF=3.7 (Q1), citations=1.

  • M. Di Folco, P. Moceri, P. Clarysse, and N. Duchateau, "Characterizing interactions between cardiac shape and deformation by non-linear manifold learning," Medical Image Analysis, vol. 75, p. 102278, 2022. Doi: 10.1007/978-3-031-35302-4_62. JIF=10.9 (Q1), citations=.

  • S. Wang, F. Varray, W. Liu, P. Clarysse, and I. E. Magnin, "Measurement of local orientation of cardiomyocyte aggregates in human left ventricle free wall samples using X-ray phase-contrast microtomography," Medical Image Analysis, vol. 75, p. 102269, 2022. Doi: 10.1016/j.media.2021.102269. JIF=10.9 (Q1), citations=2.

  • G. K. Rumindo, J. Ohayon, P. Croisille, and P. Clarysse, "In vivo estimation of normal left ventricular stiffness and contractility based on routine cine MR acquisition," Medical Engineering & Physics, vol. 85, pp. 16-26, 2020. Doi: 10.1016/j.medengphy.2020.09.003. JIF=2.4 (Q2), citations=3.

  • A. Debbich, A. Ben Abdallah, M. Maatouk, B. Hmida, M. Sigovan, P. Clarysse, and M. H. Bedoui, "A Spatiotemporal exploration and 3D modeling of blood flow in healthy carotid artery bifurcation from two modalities: Ultrasound-Doppler and phase contrast MRI," Computers in Biology and Medicine, vol. 118, p. 103644, 2020. Doi: 10.1007/s10554-020-02156-1. JIF=7.7 (Q1), citations=4.

  • L. Wang, P. Clarysse, Z. Liu, B. Gao, W. Liu, P. Croisille, and P. Delachartre, "A gradient-based optical-flow cardiac motion estimation method for cine and tagged MR images," Med Image Anal, vol. 57, pp. 136-148, 2019. Doi: 10.1016/j.media.2019.06.016. JIF=10.6 (Q1), citations=7.

  • F. Yang, Y.-M. Zhu, G. Michalowicz, P.-S. Jouk, L. Fanton, M. Viallon, P. Clarysse, P. Croisille, and Y. Usson, "Quantitative comparison of human myocardial fiber orientations derived from DTI and polarized light imaging," Physics in Medicine & Biology, vol. 63, no. 21, p. 215003, 2018. Doi: 10.1088/1361-6560/aae514. JIF=3.5 (Q1), citations=9.

  • P. R. Girard, P. Clarysse, R. Pujol, R. Goutte, and P. Delachartre, "Hyperquaternions: A New Tool for Physics," Advances in Applied Clifford Algebras, vol. 28, no. 3, p. 68, 2018. Doi: 10.1007/s00006-018-0881-8. JIF=1.5 (Q1), citations=11.

  • V. Wang, C. Casta, Y. M. Zhu, B. Cowan, P. Croisille, A. Young, P. Clarysse, and M. Nash, "Image-based investigation of human in vivo myofibre strain," IEEE Transactions on Medical Imaging, vol. PP, no. 99, pp. 1-1, 2016. Doi: 10.1016/j.media.2015.06.005. JIF=10.6 (Q1), citations=8. 

Books

  • P. Clarysse, and D. Friboulet, "Multi-modality Cardiac Imaging: Processing and Analysis", Digital signal and image processing series, Hoboken (USA) - London (UK), Wiley-ISTE, pp. 370, 2015. 

  • P. Clarysse, D. Friboulet, "Traitement et analyse d'images cardiaques", Traité IC2 Série Information et Science du vivant, Paris, Hermès-Lavoisier, pp. 344, 2015.

  • P. Clarysse, "Imagerie dynamique cardiaque et thoracique", Traité Information et Science du Vivant: Hermes-Lavoisier, 288 pages, 2011.

Proceedings of organized workshops
[FIMH-23]    Proceedings of "Functional Imaging and Modeling of the Heart, 12th International Conference, FIMH 2023," O. Bernard, P. Clarysse, N. Duchateau, J. Ohayon, and M. Viallon (eds), Lyon, France, vol. 13958, XXII, 723p, 2023. Doi: 10.1007/978-3-031-35302-4
[FIMH-03]     Proceedings of the Second international Workshop on Functional Imaging and Modeling of the Heart (FIMH’03), I.E. Magnin, J. Montagnat, P. Clarysse, J. Nenonen et T. Katila, editors, Springer, Lecture Notes in Computer Science, vol. 2674, ISBN 3-540-40262-4, 2003.
[FIMH-01]     Proceedings of the First international Workshop on Functional Imaging and Modeling of the Heart (FIMH), T. Katila, I.E. Magnin, P. Clarysse, J. Montagnat, et J. Nenonen editors, Springer, Lecture Notes in Computer Science, vol. 2230, ISBN 3-540-42861-5, nov 2001.

Journal Special Issues

  • "Medical Image Analysis - Special Issue FIMH 2023," P. Clarysse, N. Duchateau, O. Bernard, J. Ohayon, and M. Viallon, Med Image Anal, p. 103612, 2025. Doi: 10.1016/j.media.2025.103612
  • Special Issue ‘Medical Imaging’ of Mathematical Modelling of Natural Phenomena (http://www.mmnp-journal.org), P. Clarysse, D. Metaxas and J. Pousin editors, Vol. 3 No. 6 (2008)
  • Special Issue FIMH’03, J. Montagnat, P. Clarysse, J. Nenonen, T. Katila, I.E. Magnin editors, Medical Image Analysis, 9, p352, 2005
  • Special Issue FIMH’01, I.E. Magnin, P. Clarysse, J. Montagnat, J. Nenonen et T. Katila editors, Medical Image Analysis, 7, p351, 2003

     

I am the initiator with P. Croisille of the inTag software integrated as a plug-in in OsiriX software under MAC-OS (http://www.creatis.insa-lyon.fr/inTag/). This software is designed for rapid integrated analysis of tissue-labelled MRI sequences. Initially developed within MATLAB in collaboration with CARIM Lab in Maastricht, it has been ported to an OsiriX plugin with the Axinoe Company and made available since January 2010. It is freely accessible through a scientific collaboration. Please visit the inTag web site: http://www.creatis.insa-lyon.fr/inTag

I am involved in the software suite for cardiac MRI image analysis: inTag, CMRSegTools, CMRDiffTools. Information available at: https://www.creatis.insa-lyon.fr/osirix-dev/CardiacTools.html
    
Through several thesis, we developed software for the dynamic segmentation and tracking of the heart within cardiac MRI sequences, motion estimation and image registration. Some of them are available on demand.

CREATIS CNRS UMR 5220, Inserm U1044
INSA Batiment Blaise Pascal
7, Avenue Jean Capelle
F-69621 VILLEURBANNE cedex

Tel (Working Hours) : (+33) 04 72 43 81 48
E-mail : patrick.clarysse@creatis.insa-lyon.fr, mailto:patrick.clarysse@cnrs.fr

Linkedin
https://www.linkedin.com/in/patrick-clarysse-84072a8