Bmp2Dcm.cxx File Reference

#include "gdcmArgMgr.h"
#include "gdcmDirList.h"
#include "gdcmDebug.h"
#include "gdcmUtil.h"
#include <vtkImageData.h>
#include <vtkBMPReader.h>
#include <vtkBMPWriter.h>
#include "vtkGdcmWriter.h"
#include <vtkImageExtractComponents.h>
#include <vtkPointData.h>
#include <vtkDataArray.h>
#include <stdio.h>
#include <string.h>
#include <stdlib.h>
#include <math.h>

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Functions
int	main (int argc, char *argv[])

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Function Documentation

int main (  int  argc, char *  argv[] )

Definition at line 41 of file Bmp2Dcm.cxx. References FINISH_USAGE, and START_USAGE. { START_USAGE(usage) "\n Bmp2Dcm :\n ", "usage: Bmp2Dcm {filein=inputFileName|dirin=inputDirectoryName} ", " [studyUID = ] [patName = ] [debug] ", " ", " inputFileName : Name of the (single) file user wants to transform ", " inputDirectoryName : user wants to transform *all* the files ", " studyUID : *aware* user wants to add the serie ", " to an already existing study ", " verbose : user wants to run the program in 'verbose mode' ", " debug : *developper* wants to run the program in 'debug mode' ", FINISH_USAGE // ----- Initialize Arguments Manager ------ GDCM_NAME_SPACE::ArgMgr *am = new GDCM_NAME_SPACE::ArgMgr(argc, argv); if (am->ArgMgrDefined("usage") || argc == 1) { am->ArgMgrUsage(usage); // Display 'usage' delete am; return 0; } if (am->ArgMgrDefined("debug")) GDCM_NAME_SPACE::Debug::DebugOn(); int verbose = am->ArgMgrDefined("verbose"); const char *fileName = am->ArgMgrGetString("filein"); const char *dirName = am->ArgMgrGetString("dirin"); if ( (fileName == 0 && dirName == 0) || (fileName != 0 && dirName != 0) ) { std::cout <<std::endl << "Either 'filein=' or 'dirin=' must be present;" << std::endl << "Not both" << std::endl; am->ArgMgrUsage(usage); // Display 'usage' delete am; return 0; } std::string patName = am->ArgMgrGetString("patname", dirName); bool userDefinedStudy = am->ArgMgrDefined("studyUID"); const char *studyUID; if (userDefinedStudy) studyUID = am->ArgMgrGetString("studyUID"); // not described *on purpose* in the Usage ! bool userDefinedSerie = am->ArgMgrDefined("serieUID"); const char *serieUID; if(userDefinedSerie) serieUID = am->ArgMgrGetString("serieUID"); /* if unused Param we give up */ if ( am->ArgMgrPrintUnusedLabels() ) { am->ArgMgrUsage(usage); delete am; return 0; } delete am; // ------ we don't need Arguments Manager any longer ------ // ----- Begin Processing ----- int *dim; std::string nomFich; if ( fileName != 0 ) // ====== Deal with a single file ====== { vtkBMPReader* Reader = vtkBMPReader::New(); if ( Reader->CanReadFile(fileName ) == 0) { // skip 'non BMP' files Reader->Delete(); if (verbose) std::cout << "Sorry, [" << fileName << "] is not a BMP file!" << std::endl; return 0; } if (verbose) std::cout << "deal with [" << fileName << "]" << std::endl; //Read BMP file Reader->SetFileName(fileName); Reader->Update(); vtkImageExtractComponents* Red = vtkImageExtractComponents::New(); Red->SetInput(Reader->GetOutput()); Red->SetComponents(0); Red->Update(); vtkGdcmWriter* Writer = vtkGdcmWriter::New(); Writer->SetInput(Red->GetOutput()); nomFich = ""; nomFich = nomFich+fileName+".acr"; Writer->Write(); Reader->Delete(); Red->Delete(); Writer->Delete(); } else // ====== Deal with a (single Patient) Directory ====== { if ( ! GDCM_NAME_SPACE::DirList::IsDirectory(dirName) ) { std::cout << "KO : [" << dirName << "] is not a Directory." << std::endl; return 0; } else { if (verbose) std::cout << "OK : [" << dirName << "] is a Directory." << std::endl; } std::string strStudyUID; std::string strSerieUID; if (userDefinedStudy) strSerieUID = studyUID; else strStudyUID = GDCM_NAME_SPACE::Util::CreateUniqueUID(); if (userDefinedStudy) strSerieUID = serieUID; else strStudyUID = GDCM_NAME_SPACE::Util::CreateUniqueUID(); if(verbose) std::cout << "dirName [" << dirName << "]" << std::endl; GDCM_NAME_SPACE::DirList dirList(dirName,1); // gets recursively the file list GDCM_NAME_SPACE::DirListType fileList = dirList.GetFilenames(); for( GDCM_NAME_SPACE::DirListType::iterator it = fileList.begin(); it != fileList.end(); ++it ) { if ( GDCM_NAME_SPACE::Util::GetName((*it)).c_str()[0] == '.' ) { // skip hidden files continue; } vtkBMPReader* Reader = vtkBMPReader::New(); if ( Reader->CanReadFile(it->c_str() ) == 0) { // skip 'non BMP' files Reader->Delete(); continue; } if (verbose) std::cout << "deal with [" << it->c_str() << "]" << std::endl; Reader->SetFileName(it->c_str()); Reader->Update(); dim=Reader->GetOutput()->GetDimensions(); vtkImageExtractComponents* Red = vtkImageExtractComponents::New(); Red->SetInput(Reader->GetOutput()); Red->SetComponents(0); Red->Update(); // At least, created files will look like a Serie from a single Study ... GDCM_NAME_SPACE::File *f = GDCM_NAME_SPACE::File::New(); f->InsertEntryString(strStudyUID, 0x0020, 0x000d, "UI"); f->InsertEntryString(strSerieUID, 0x0020, 0x000e, "UI"); f->InsertEntryString(patName, 0x0010, 0x0010, "PN"); // Patient's Name vtkGdcmWriter* Writer = vtkGdcmWriter::New(); Writer->SetInput(Red->GetOutput()); nomFich = ""; nomFich = nomFich+it->c_str()+".acr"; Writer->SetFileName(nomFich.c_str()); Writer->SetGdcmFile(f); Writer->Write(); f->Delete(); } } return 0; }

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