GDCM_NAME_SPACE Namespace Reference

namespace for Grass root DiCoM More...

Classes
class	ArgMgr
	class designed for command line arguments management (to make programmer's live easier) NOT Dicom dependant (could be used for any kind of 'command line program') More...
class	Base
	Base class of all gdcm classes. Contains the Print related methods : Print SetPrintLevel / GetPrintLevel. More...
class	CallbackCommand
	CallbackCommand base class to react on a gdcm event. More...
class	Command
	Command base class to react on a gdcm event. More...
class	CommandManager
	CommandManager base class to react on a gdcm event. More...
struct	DicomElement
	structure, for internal use only More...
class	DataEntry
	Any Dicom Document (File or DicomDir, or ...) contains a set of DocEntry - Dicom entries - (when successfuly parsed against a given Dicom dictionary) DataEntry is an elementary DocEntry (as opposed to SeqEntry). Depending on the type of its content,. More...
class	Debug
	Debug is an object for warning/logging/tracing programs. It has the following modes : error : for bad library use, seriously wrong DICOM debug : for information/debug messages warning : Warns the user when some oddity occured. log : we display messages when anything is not Dicom Kosher debug : we help developper to trace, at a glance, the execution assert : design by contract implementation. A function should have proper input and proper output. (should not happen, not user controlled). More...
struct	DICT_ENTRY
struct	ELEMENT
class	DicomDir
	DicomDir defines an object representing a DICOMDIR in memory as a tree-like structure :. More...
class	DicomDirElement
	Represents elements contained in a DicomDir class for the chained lists from the file 'Dicts/DicomDir.dic'. More...
class	DicomDirImage
	describes an IMAGE within a SERIE (DicomDirSerie) of a given DICOMDIR (DicomDir) More...
class	DicomDirMeta
	Meta Elements (group 0002) of a DicomDir. More...
class	DicomDirObject
	Parent object for DicomDirPatient, DicomDirStudy, DicomDirSerie, DicomDirImage, of a DicomDir. More...
class	DicomDirPatient
	describes a PATIENT within a DICOMDIR (DicomDir) More...
class	DicomDirPrivate
	describes a PRIVATE within a within a SERIE (DicomDirSerie) of a given DICOMDIR (DicomDir) More...
class	DicomDirSerie
	describes a SERIE within a within a STUDY (DicomDirStudy) of a given DICOMDIR (DicomDir) More...
class	DicomDirStudy
	describes a STUDY within a within a PATIENT (DicomDirPatient) of a given DICOMDIR (DicomDir) More...
class	DicomDirVisit
	describes a VISIT within a within a STUDY (DicomDirStudy) of a given DICOMDIR (DicomDir) More...
class	DicomEntry
	a DicomEntry is an element contained by the Dict. It contains : the key referenced by the DICOM norm or the manufacturer(for private keys) i.e. - the Group number - the Element number the VR (Value Representation) the VM (Value Multiplicity) the corresponding name in english More...
class	Dict
	Dict acts a memory representation of a dicom dictionary i.e. it is a container for a collection of dictionary entries. The dictionary is loaded from in an ascii file. There should be a single public dictionary (THE dictionary of the actual DICOM v3) but as many shadow dictionaries as imagers combined with all software versions... More...
class	DictEntry
	the DictEntry in an element contained by the Dict. It contains : the key referenced by the DICOM norm or the constructor (for private keys) i.e. the Group number the Element number the VR (Value Representation) the VM (Value Multiplicity) the corresponding name in english More...
class	DictGroupName
	Container for dicom 'Group Name' Hash Table. (formerly NIH defined ACR-NEMA group name). More...
class	DictSet
	Container for managing a set of loaded dictionaries (Dict). More...
class	DirList
	List containing the file headers of all the 'gdcm readable' files found by exploring (possibly recursively) a root directory. More...
class	DocEntry
	The dicom header of a Dicom file contains a set of such entries (when successfuly parsed against a given Dicom dictionary). More...
class	DocEntryArchive
	Container It's goal is to change the File header correctly. At this time, the change is only made for the first level of the Document. In the future, it might consider Dicom Sequences (SeqEntry, within any SQItem). The change is made by replacing a DocEntry by an other that is created outside the class. The old value is kept. When we restore the File status, the added DocEntry is deleted and replaced by the old value. More...
class	DocEntrySet
	DocEntrySet is an abstract base class for ElementSet, SQItem which are both containers for DocEntries. ElementSet is based on the STL map<> container (see ElementSet::TagHT) SQItem is based on an STL list container (see ListDocEntry). More...
class	Document
	Derived by both gdcm::File and gdcm::DicomDir. More...
class	ElementSet
	ElementSet is based on the STL map<> container (see ElementSet::TagHT), as opposed to SQItem which is based on an STL list container (see ListDocEntry). It contains the 'zero-level- DocEntry (out of any Dicom Sequence) More...
class	Exception
	Any exception thrown in the gdcm library. More...
class	FileError
	File error exception thrown in the gdcm library. More...
class	FormatUnexpected
	Unexpected file format exception. More...
class	FormatError
	Invalid file format exception. More...
class	File
	DICOM elements and their corresponding values (and additionaly the corresponding DICOM dictionary entry) of the header of a DICOM file. More...
class	FileHelper
	In addition to Dicom header exploration, this class is designed for accessing the image/volume content. One can also use it to write Dicom/ACR-NEMA/RAW files. More...
class	Global
class	JPEGFragment
	*very* internal class . Shouldn't appear here ! Utility class for summerizing the informations of a JPEG fragment of an "Encapsulated JPEG Compressed Image". This information is a mix of: the fragment offset the fragment length More...
class	JPEGFragmentsInfo
	Utility class for gathering the informations of the collection of JPEG fragment[s] (see JPEGFragment) when handling "Encapsulated JPEG Compressed Images". The informations on each frame are obtained during the pixel parsing of a gdcm::File (refer to File::ComputeJPEGFragmentInfo() ). They shall be used when (if necessary) decoding the fragments. More...
struct	vector3D
class	Orientation
	Orientation class for dealing with DICOM image orientation. More...
class	PixelReadConvert
	Utility container for gathering the various forms the pixel data migth take during the user demanded processes. WARNING : *none* of these functions may be invoked by gdcm user (internal use only). More...
class	PixelWriteConvert
class	RefCounter
	Integration of reference counting with a destruction of the object only when the reference is to zero. More...
class	RLEFrame
	Utility class for summerizing the informations of a SINGLE RLE frame of an "Encapsulated RLE Compressed Image" (refer to PS 3.5-2003 annex G). This information is a mix of: the RLE Header (see PS 3.5-2003 section G5) and the lengths of each RLE segment [ which can be decuded from both the above RLE Header and the itemlength of the frame). More...
class	RLEFramesInfo
	Utility class for gathering the informations of the collection of RLE frame[s] (see RLEFrame) when handling "Encapsulated RLE Compressed Images" (see PS 3.5-2003 annex G). Note: a classical image can be considered as the degenerated case of a multiframe image. In this case the collection is limited to a single individual frame. The informations on each frame are obtained during the pixel parsing of a gdcm::File (refer to File::ComputeRLEInfo() ). They shall be used when (if necessary) decoding the frames. More...
class	SeqEntry
	a SeqEntry (as opposed to a DataEntry) is a non elementary DocEntry. It is composed by a set of SQItems. Each SQItem is composed by a set of DocEntry A DocEntry may be a SeqEntry ... and so forth More...
class	SerieHelper
	This class should be used for a stack of 2D dicom images. More...
class	SQItem
	a SeqEntry is composed by a set of SQItems. Each SQItem is composed by a set of DocEntry A DocEntry may be a SeqEntry ... and so forth More...
class	TagKey
class	TS
	Container for dicom 'Transfer Syntax' Hash Table. More...
class	Util
	Here are some utility functions, belonging to the gdcm::Util class, dealing with strings, file names... that can be called from anywhere by whomsoever they can help. More...
class	Validator
class	VR
	Container for dicom Value Representation Hash Table. More...
class	VRKey
Typedefs
typedef std::pair< const Base *, unsigned int >	CommandKey
typedef std::map< CommandKey, Command * >	CommandHT
typedef std::string	TagName
	TagKey is made to hold the standard Dicom Tag (Group number, Element number) Instead of using the two '16 bits integers' as the Hask Table key, we converted into a string (e.g. 0x0018,0x0050 converted into "0018|0050") It appears to be a huge waste of time. We'll fix the mess up -without any change in the API- as soon as the bench marks are fully performed. TagName is made to hold the 'non hexa" fields (VR, VM, Name) of Dicom Entries.
typedef std::list< DicomDirPatient * >	ListDicomDirPatient
typedef std::vector< Document * >	VectDocument
typedef std::list< DicomElement >	ListDicomDirElem
typedef std::list< DicomElement >	ListDicomDirMetaElem
typedef std::list< DicomElement >	ListDicomDirPatientElem
typedef std::list< DicomElement >	ListDicomDirStudyElem
typedef std::list< DicomElement >	ListDicomDirVisitElem
typedef std::list< DicomElement >	ListDicomDirSerieElem
typedef std::list< DicomElement >	ListDicomDirImageElem
typedef std::list< DicomElement >	ListDicomDirPrivateElem
typedef std::list< DicomDirObject * >	ListContent
typedef std::list< DicomDirStudy * >	ListDicomDirStudy
typedef std::list< DicomDirImage * >	ListDicomDirImage
typedef std::list< DicomDirPrivate * >	ListDicomDirPrivate
typedef std::list< DicomDirSerie * >	ListDicomDirSerie
typedef std::list< DicomDirVisit * >	ListDicomDirVisit
typedef std::string	DictKey
typedef std::map< TagKey, DictEntry * >	TagKeyHT
typedef std::map< uint16_t, TagName >	DictGroupNameHT
	Group Name Hash Table.
typedef std::map< DictKey, Dict * >	DictSetHT
typedef std::vector< std::string >	DirListType
typedef std::map< TagKey, DocEntry * >	TagDocEntryHT
typedef std::map< uint16_t, int >	GroupHT
typedef void(*	VOID_FUNCTION_PUINT8_PFILE_POINTER )(uint8_t *, File *)
typedef std::pair< double, double >	Res
typedef void(*	VOID_FUNCTION_PUINT8_PFILE_POINTER )(uint8_t *, File *)
typedef std::pair< size_t, uint32_t >	JpegPair
typedef std::vector< JpegPair >	JpegVector
typedef std::list< SQItem * >	ListSQItem
typedef std::vector< File * >	FileList
typedef std::vector< File * >	GdcmFileList
typedef std::map< std::string, FileList * >	XCoherentFileSetmap
	XCoherent stands for 'Extra Coherent', (The name 'Coherent' would be enough but it was used before; I don't want to put a bomb in the code) Any 'better name' is welcome !
typedef bool(*	BOOL_FUNCTION_PFILE_PFILE_POINTER )(File *, File *)
typedef std::list< DocEntry * >	ListDocEntry
typedef std::string	TSKey
typedef std::string	TSAtr
typedef std::map< TSKey, TSAtr >	TSHT
typedef std::map< uint16_t, int >	GroupHT
typedef std::string	VRAtr
typedef std::map< VRKey, VRAtr >	VRHT
	Value Representation Hash Table.
Enumerations
enum	CommandType {   CMD_UNKNOWN = 0, CMD_DEBUG, CMD_WARNING, CMD_ERROR,   CMD_ASSERT, CMD_STARTPROGRESS, CMD_ENDPROGRESS, CMD_PROGRESS }
	Command list. More...
enum	FileType {   Unknown = 0, ExplicitVR, ImplicitVR, ACR,   ACR_LIBIDO, JPEG, JPEG2000 }
	various types of a DICOM file (for internal use only) More...
enum	DicomDirType {   DD_UNKNOWN = 0, DD_META, DD_PATIENT, DD_STUDY,   DD_SERIE, DD_IMAGE, DD_VISIT }
	type of the elements composing a DICOMDIR (for internal use only) More...
enum	CompOperators {   GDCM_EQUAL = 0, GDCM_DIFFERENT, GDCM_GREATER, GDCM_GREATEROREQUAL,   GDCM_LESS, GDCM_LESSOREQUAL }
	comparison operators (as used in SerieHelper::AddRestriction() ) More...
enum	LodModeType { LD_ALL = 0x00000000, LD_NOSEQ = 0x00000001, LD_NOSHADOW = 0x00000002, LD_NOSHADOWSEQ = 0x00000004 }
	Loading mode. More...
enum	ImageContentType { USER_OWN_IMAGE = 1, FILTERED_IMAGE, CREATED_IMAGE, UNMODIFIED_PIXELS_IMAGE }
	Only user knows what kind of image he is going to write ! More...
enum	ModalityType {   Unknow, AU, AS, BI,   CF, CP, CR, CS,   CT, DD, DF, DG,   DM, DS, DX, ECG,   EPS, ES, FA, FS,   HC, HD, LP, LS,   MA, MR, NM, OT,   PT, RF, RG, RTDOSE,   RTIMAGE, RTPLAN, RTSTRUCT, SM,   ST, TG, US, VF,   XA, XC }
enum	OrientationType {   NotApplicable = 0, Axial = 1, AxialInvert = -1, Coronal = 2,   CoronalInvert = -2, Sagital = 3, SagitalInvert = -3, HeartAxial = 4,   HeartAxialInvert = -4, HeartCoronal = 5, HeartCoronalInvert = -5, HeartSagital = 6,   HeartSagitalInvert = -6 }
Functions
void	FillDefaultDataDict (Dict *d)
	auto generated function, to fill up the Dicom Dictionnary, if relevant file is not found on user's disk
void	FillDefaultTSDict (TSHT &ts)
	auto generated function, to fill up the Dicom Dictionnary, if relevant file is not found on user's disk
void	FillDefaultVRDict (VRHT &vr)
	auto generated function, to fill up the 'Value Representation' Dictionnary, if relevant file is not found on user's disk
void	FillDefaultDictGroupName (DictGroupNameHT &groupName)
	auto generated function, to fill up the 'Group Name' Dictionnary, if relevant file is not found on user's disk
void	FillDefaultDIRDict (DicomDirElement *dde)
	auto generate function, to fill up the default elements for a DICOMDIR, if relevant file is not found on user's disk
std::ostream &	operator<< (std::ostream &os, const Exception &e)
	Exception::operator <<.
void	error_callback (const char *msg, void *)
	routine for JPEG decompression
void	warning_callback (const char *msg, void *)
void	info_callback (const char *msg, void *)
int	int_ceildivpow2 (int a, int b)
bool	gdcm_read_JPEG2000_file (void *raw, char *inputdata, size_t inputlength)
template<typename T>
void	rawtoimage_fill (T *inputbuffer, int w, int h, int numcomps, opj_image_t *image)
opj_image_t *	rawtoimage (char *inputbuffer, opj_cparameters_t *parameters, int fragment_size, int image_width, int image_height, int sample_pixel, int bitsallocated, int sign, int quality)
bool	gdcm_write_JPEG2000_file (std::ostream *fp, char *inputdata, size_t inputlength, int image_width, int image_height, int numZ, int sample_pixel, int bitsallocated, int sign, int quality)
bool	gdcm_read_JPEG2000_file (std::ifstream *fp, void *image_buffer)
bool	gdcm_read_JPEGLS_file (std::ifstream *fp, void *image_buffer)
	routine for JPEG decompression. WARNING LPEG-LS is NOT the 'classical' jpeg lossless. See : http://www.jpeg.org/jpeg/jpegls.html gdcm DOES deal with 'classical' jpeg lossless
double	square_dist (vector3D const &v1, vector3D const &v2)
void	WriteDICOMItems (std::ostream *fp, JpegVector &v)
void	EncodeWithoutBasicOffsetTable (std::ostream *fp, int numFrag)
void	EncodeWithBasicOffsetTable (std::ostream *fp, int numFrag, size_t &start)
void	UpdateBasicOffsetTable (std::ostream *fp, JpegVector const &v, size_t pos)
void	UpdateJpegFragmentSize (std::ostream *fp, JpegVector const &v)
void	CloseJpeg (std::ostream *fp, JpegVector &v)
bool	gdcm_write_JPEG_file8 (std::ostream *fp, char *inputdata, size_t inputlength, int image_width, int image_height, int numZ, int sample_pixel, int bitsallocated, int quality)
bool	gdcm_write_JPEG_file12 (std::ostream *fp, char *inputdata, size_t inputlength, int image_width, int image_height, int numZ, int sample_pixel, int bitsallocated, int quality)
bool	gdcm_write_JPEG_file16 (std::ostream *fp, char *inputdata, size_t inputlength, int image_width, int image_height, int numZ, int sample_pixel, int bitsallocated, int quality)
std::ostream &	operator<< (std::ostream &_os, const TagKey &_val)
int	GetMacAddrSys (unsigned char *addr)
	gets current M.A.C adress (for internal use only)
int	getlastdigit (unsigned char *data)
	Mini function to return the last digit from a number express in base 256 pre condition data contain an array of 6 unsigned char post condition carry contain the last digit.
std::ostream &	binary_write (std::ostream &os, const uint16_t &val)
	binary_write binary_write
std::ostream &	binary_write (std::ostream &os, const uint32_t &val)
	binary_write binary_write
std::ostream &	binary_write (std::ostream &os, const double &val)
	binary_write binary_write
std::ostream &	binary_write (std::ostream &os, const char *val)
	binary_write binary_write
std::ostream &	binary_write (std::ostream &os, std::string const &val)
	binary_write binary_write
std::ostream &	binary_write (std::ostream &os, const uint8_t *val, size_t len)
	binary_write binary_write
std::ostream &	binary_write (std::ostream &os, const uint16_t *val, size_t len)
	binary_write binary_write
bool	CheckVM (DataEntry *entry)
std::ostream &	operator<< (std::ostream &_os, const VRKey &_val)
std::istream &	operator>> (std::istream &_is, VRKey &_val)
Variables
GDCM_EXPORT const std::string	GDCM_UNKNOWN
	Those global string that are returned by reference everywhere in gdcm code used to be in gdcmCommon.h but due to a 'bug' in gcc/MacOSX you cannot have static initialization in a multithreaded environment since there is a lazy construction everything got skrew up somehow Therefore the actual initialization is done in a cxx file (avoid duplicated symbol), and an extern is used in gdcmCommon.h.
GDCM_EXPORT const std::string	GDCM_UNFOUND
GDCM_EXPORT const std::string	GDCM_BINLOADED
GDCM_EXPORT const std::string	GDCM_NOTLOADED
GDCM_EXPORT const std::string	GDCM_UNREAD
GDCM_EXPORT const std::string	GDCM_NOTASCII
GDCM_EXPORT const std::string	GDCM_PIXELDATA
GDCM_EXPORT const char	GDCM_VRUNKNOWN [2]
GDCM_EXPORT const char	GDCM_FILESEPARATOR
static DICT_ENTRY	datadir []
static ELEMENT	dataElement []
const std::string	GDCM_UNKNOWN = "GDCM::Unknown"
	Those global string that are returned by reference everywhere in gdcm code used to be in gdcmCommon.h but due to a 'bug' in gcc/MacOSX you cannot have static initialization in a multithreaded environment since there is a lazy construction everything got skrew up somehow Therefore the actual initialization is done in a cxx file (avoid duplicated symbol), and an extern is used in gdcmCommon.h.
const std::string	GDCM_UNFOUND = "GDCM::Unfound"
const std::string	GDCM_BINLOADED = "GDCM::Binary data loaded"
const std::string	GDCM_NOTLOADED = "GDCM::NotLoaded"
const std::string	GDCM_UNREAD = "GDCM::UnRead"
const std::string	GDCM_NOTASCII = "GDCM::NotAscii"
const std::string	GDCM_PIXELDATA = "GDCM::Pixel Data to be loaded"
const char	GDCM_VRUNKNOWN [2] = {' ',' '}
const char	GDCM_FILESEPARATOR = '/'
Global	Glob
	Global container.
static const char *	OrientationTypeStrings []
	THERALYS' Algorithm to determine the most similar basic orientation (Axial, Coronal, Sagital) of the image.
static const char *	SpecialStrings []
	Transfer Syntaxes gdcm deals with (internal use only).

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Detailed Description

namespace for Grass root DiCoM

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Typedef Documentation

typedef bool(* GDCM_NAME_SPACE::BOOL_FUNCTION_PFILE_PFILE_POINTER)(File *, File *)

Definition at line 47 of file gdcmSerieHelper.h.

typedef std::map<CommandKey,Command *> GDCM_NAME_SPACE::CommandHT

Definition at line 32 of file gdcmCommandManager.h.

typedef std::pair<const Base *, unsigned int> GDCM_NAME_SPACE::CommandKey

Definition at line 30 of file gdcmCommandManager.h.

typedef std::map<uint16_t, TagName> GDCM_NAME_SPACE::DictGroupNameHT

Group Name Hash Table. Definition at line 33 of file gdcmDictGroupName.h.

typedef std::string GDCM_NAME_SPACE::DictKey

Definition at line 34 of file gdcmDict.h.

typedef std::map<DictKey, Dict*> GDCM_NAME_SPACE::DictSetHT

Definition at line 32 of file gdcmDictSet.h.

typedef std::vector<std::string> GDCM_NAME_SPACE::DirListType

Definition at line 32 of file gdcmDirList.h.

typedef std::vector<File* > GDCM_NAME_SPACE::FileList

Definition at line 34 of file gdcmSerieHelper.h.

typedef std::vector<File* > GDCM_NAME_SPACE::GdcmFileList

Definition at line 38 of file gdcmSerieHelper.h.

typedef std::map<uint16_t, int> GDCM_NAME_SPACE::GroupHT

Definition at line 30 of file gdcmValidator.cxx.

typedef std::map<uint16_t, int> GDCM_NAME_SPACE::GroupHT

Definition at line 159 of file gdcmFileHelper.cxx.

typedef std::pair<size_t, uint32_t> GDCM_NAME_SPACE::JpegPair

Definition at line 129 of file gdcmPixelWriteConvert.cxx.

typedef std::vector<JpegPair> GDCM_NAME_SPACE::JpegVector

Definition at line 130 of file gdcmPixelWriteConvert.cxx.

typedef std::list<DicomDirObject *> GDCM_NAME_SPACE::ListContent

Definition at line 31 of file gdcmDicomDirObject.h.

typedef std::list<DicomElement> GDCM_NAME_SPACE::ListDicomDirElem

Definition at line 32 of file gdcmDicomDirElement.h.

typedef std::list<DicomDirImage *> GDCM_NAME_SPACE::ListDicomDirImage

Definition at line 27 of file gdcmDicomDirSerie.h.

typedef std::list<DicomElement> GDCM_NAME_SPACE::ListDicomDirImageElem

Definition at line 38 of file gdcmDicomDirElement.h.

typedef std::list<DicomElement> GDCM_NAME_SPACE::ListDicomDirMetaElem

Definition at line 33 of file gdcmDicomDirElement.h.

typedef std::list<DicomDirPatient *> GDCM_NAME_SPACE::ListDicomDirPatient

Definition at line 39 of file gdcmDicomDir.h.

typedef std::list<DicomElement> GDCM_NAME_SPACE::ListDicomDirPatientElem

Definition at line 34 of file gdcmDicomDirElement.h.

typedef std::list<DicomDirPrivate *> GDCM_NAME_SPACE::ListDicomDirPrivate

Definition at line 31 of file gdcmDicomDirSerie.h.

typedef std::list<DicomElement> GDCM_NAME_SPACE::ListDicomDirPrivateElem

Definition at line 39 of file gdcmDicomDirElement.h.

typedef std::list<DicomDirSerie *> GDCM_NAME_SPACE::ListDicomDirSerie

Definition at line 27 of file gdcmDicomDirStudy.h.

typedef std::list<DicomElement> GDCM_NAME_SPACE::ListDicomDirSerieElem

Definition at line 37 of file gdcmDicomDirElement.h.

typedef std::list<DicomDirStudy*> GDCM_NAME_SPACE::ListDicomDirStudy

Definition at line 26 of file gdcmDicomDirPatient.h.

typedef std::list<DicomElement> GDCM_NAME_SPACE::ListDicomDirStudyElem

Definition at line 35 of file gdcmDicomDirElement.h.

typedef std::list<DicomDirVisit *> GDCM_NAME_SPACE::ListDicomDirVisit

Definition at line 33 of file gdcmDicomDirStudy.h.

typedef std::list<DicomElement> GDCM_NAME_SPACE::ListDicomDirVisitElem

Definition at line 36 of file gdcmDicomDirElement.h.

typedef std::list<DocEntry *> GDCM_NAME_SPACE::ListDocEntry

Definition at line 29 of file gdcmSQItem.h.

typedef std::list<SQItem *> GDCM_NAME_SPACE::ListSQItem

Definition at line 28 of file gdcmSeqEntry.h.

typedef std::pair<double, double> GDCM_NAME_SPACE::Res

Definition at line 34 of file gdcmOrientation.h.

typedef std::map<TagKey, DocEntry *> GDCM_NAME_SPACE::TagDocEntryHT

Definition at line 30 of file gdcmElementSet.h.

typedef std::map<TagKey, DictEntry *> GDCM_NAME_SPACE::TagKeyHT

Definition at line 35 of file gdcmDict.h.

typedef std::string GDCM_NAME_SPACE::TagName

TagKey is made to hold the standard Dicom Tag (Group number, Element number) Instead of using the two '16 bits integers' as the Hask Table key, we converted into a string (e.g. 0x0018,0x0050 converted into "0018|0050") It appears to be a huge waste of time. We'll fix the mess up -without any change in the API- as soon as the bench marks are fully performed. TagName is made to hold the 'non hexa" fields (VR, VM, Name) of Dicom Entries. Definition at line 99 of file gdcmCommon.h.

typedef std::string GDCM_NAME_SPACE::TSAtr

Definition at line 32 of file gdcmTS.h.

typedef std::map<TSKey, TSAtr> GDCM_NAME_SPACE::TSHT

Definition at line 33 of file gdcmTS.h.

typedef std::string GDCM_NAME_SPACE::TSKey

Definition at line 31 of file gdcmTS.h.

typedef std::vector<Document *> GDCM_NAME_SPACE::VectDocument

Definition at line 42 of file gdcmDicomDir.h.

typedef void(* GDCM_NAME_SPACE::VOID_FUNCTION_PUINT8_PFILE_POINTER)(uint8_t *, File *)

Definition at line 36 of file gdcmPixelReadConvert.h.

typedef void(* GDCM_NAME_SPACE::VOID_FUNCTION_PUINT8_PFILE_POINTER)(uint8_t *, File *)

Definition at line 36 of file gdcmFileHelper.h.

typedef std::string GDCM_NAME_SPACE::VRAtr

Definition at line 33 of file gdcmVR.h.

typedef std::map<VRKey, VRAtr> GDCM_NAME_SPACE::VRHT

Value Representation Hash Table. Definition at line 35 of file gdcmVR.h.

typedef std::map<std::string, FileList *> GDCM_NAME_SPACE::XCoherentFileSetmap

XCoherent stands for 'Extra Coherent', (The name 'Coherent' would be enough but it was used before; I don't want to put a bomb in the code) Any 'better name' is welcome ! Definition at line 45 of file gdcmSerieHelper.h.

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Enumeration Type Documentation

enum GDCM_NAME_SPACE::CommandType

Command list. Enumerator: CMD_UNKNOWN  CMD_DEBUG  CMD_WARNING  CMD_ERROR  CMD_ASSERT  CMD_STARTPROGRESS  CMD_ENDPROGRESS  CMD_PROGRESS  Definition at line 31 of file gdcmCommand.h. { CMD_UNKNOWN =0, CMD_DEBUG, CMD_WARNING, CMD_ERROR, CMD_ASSERT, CMD_STARTPROGRESS, CMD_ENDPROGRESS, CMD_PROGRESS };

enum GDCM_NAME_SPACE::CompOperators

comparison operators (as used in SerieHelper::AddRestriction() ) Enumerator: GDCM_EQUAL  GDCM_DIFFERENT  GDCM_GREATER  GDCM_GREATEROREQUAL  GDCM_LESS  GDCM_LESSOREQUAL  Definition at line 127 of file gdcmCommon.h. { GDCM_EQUAL = 0, GDCM_DIFFERENT, GDCM_GREATER, GDCM_GREATEROREQUAL, GDCM_LESS, GDCM_LESSOREQUAL };

enum GDCM_NAME_SPACE::DicomDirType

type of the elements composing a DICOMDIR (for internal use only) Enumerator: DD_UNKNOWN  DD_META  DD_PATIENT  DD_STUDY  DD_SERIE  DD_IMAGE  DD_VISIT  Definition at line 116 of file gdcmCommon.h. { DD_UNKNOWN = 0, DD_META, DD_PATIENT, DD_STUDY, DD_SERIE, DD_IMAGE, DD_VISIT };

enum GDCM_NAME_SPACE::FileType

various types of a DICOM file (for internal use only) Enumerator: Unknown  ExplicitVR  ImplicitVR  ACR  ACR_LIBIDO  JPEG  Todo: FIXME : an encapsulated JPEG file may be either ExplicitVR or ImplicitVR, right? JPEG2000  Definition at line 102 of file gdcmCommon.h. { // note to developer : don't forget to add as well in vtkGdcmWriter.h ! Unknown = 0, ExplicitVR, // DicomDir is in this case. Except when it's ImplicitVR !... ImplicitVR, ACR, ACR_LIBIDO, JPEG, JPEG2000 };

enum GDCM_NAME_SPACE::ImageContentType

Only user knows what kind of image he is going to write ! -1) user created ex nihilo his own image and wants to write it as a Dicom image. USER_OWN_IMAGE -2) user modified the pixels of an existing image. FILTERED_IMAGE -3) user created a new image, using existing images (eg MIP, MPR, cartography image) CREATED_IMAGE -4) user modified/added some tags *without processing* the pixels (anonymization... UNMODIFIED_PIXELS_IMAGE Enumerator: USER_OWN_IMAGE  FILTERED_IMAGE  CREATED_IMAGE  UNMODIFIED_PIXELS_IMAGE  Definition at line 157 of file gdcmCommon.h. { // note to developer : don't forget to add as well in vtkGdcmWriter.h ! USER_OWN_IMAGE = 1, FILTERED_IMAGE, CREATED_IMAGE, UNMODIFIED_PIXELS_IMAGE };

enum GDCM_NAME_SPACE::LodModeType

Loading mode. Enumerator: LD_ALL  LD_NOSEQ  LD_NOSHADOW  LD_NOSHADOWSEQ  Definition at line 137 of file gdcmCommon.h. { LD_ALL = 0x00000000, // Load all LD_NOSEQ = 0x00000001, // Don't load Sequences LD_NOSHADOW = 0x00000002, // Don't load odd groups LD_NOSHADOWSEQ = 0x00000004 // Don't load Sequences if they belong // to an odd group // (*exclusive* from LD_NOSEQ and LD_NOSHADOW) };

enum GDCM_NAME_SPACE::ModalityType

Enumerator: Unknow  AU  AS  BI  CF  CP  CR  CS  CT  DD  DF  DG  DM  DS  DX  ECG  EPS  ES  FA  FS  HC  HD  LP  LS  MA  MR  NM  OT  PT  RF  RG  RTDOSE  RTIMAGE  RTPLAN  RTSTRUCT  SM  ST  TG  US  VF  XA  XC  Definition at line 35 of file gdcmFile.h. { Unknow, AU, // Voice Audio AS, // Angioscopy BI, // Biomagnetic Imaging CF, // Cinefluorography CP, // Culposcopy CR, // Computed Radiography CS, // Cystoscopy CT, // Computed Tomography DD, // Duplex Dopler DF, // Digital Fluoroscopy DG, // Diaphanography DM, // Digital Microscopy DS, // Digital Substraction Angiography DX, // Digital Radiography ECG, // Echocardiography EPS, // Basic Cardiac EP ES, // Endoscopy FA, // Fluorescein Angiography FS, // Fundoscopy HC, // Hard Copy HD, // Hemodynamic LP, // Laparoscopy LS, // Laser Surface Scan MA, // Magnetic Resonance Angiography MR, // Magnetic Resonance NM, // Nuclear Medicine OT, // Other PT, // Positron Emission Tomography RF, // Radio Fluoroscopy RG, // Radiographic Imaging RTDOSE, // Radiotherapy Dose RTIMAGE, // Radiotherapy Image RTPLAN, // Radiotherapy Plan RTSTRUCT, // Radiotherapy Structure Set SM, // Microscopic Imaging ST, // Single-photon Emission Computed Tomography TG, // Thermography US, // Ultrasound VF, // Videofluorography XA, // X-Ray Angiography XC // Photographic Imaging };

enum GDCM_NAME_SPACE::OrientationType

Enumerator: NotApplicable  Axial  AxialInvert  Coronal  CoronalInvert  Sagital  SagitalInvert  HeartAxial  HeartAxialInvert  HeartCoronal  HeartCoronalInvert  HeartSagital  HeartSagitalInvert  Definition at line 37 of file gdcmOrientation.h. { NotApplicable = 0, Axial = 1, AxialInvert = -1, Coronal = 2, CoronalInvert = -2, Sagital = 3, SagitalInvert = -3, HeartAxial = 4, HeartAxialInvert = -4, HeartCoronal = 5, HeartCoronalInvert = -5, HeartSagital = 6, HeartSagitalInvert = -6 } OrientationType;

---

Function Documentation

GDCM_EXPORT std::ostream & GDCM_NAME_SPACE::binary_write (  std::ostream &  os, const uint16_t *  val, size_t  len )

binary_write binary_write Parameters: os  ostream to write to val  16 bits words aray to write len  length (in bytes) of the 'value' to be written Definition at line 1086 of file gdcmUtil.cxx. { // This is tricky since we are writting two bytes buffer. // Be carefull with little endian vs big endian. // Also this other trick is to allocate a small (efficient) buffer that store // intermediate result before writting it. #if defined(GDCM_WORDS_BIGENDIAN) || defined(GDCM_FORCE_BIGENDIAN_EMULATION) const int BUFFER_SIZE = 4096; static char buffer[BUFFER_SIZE]; uint16_t *binArea16 = (uint16_t*)val; //for the const // how many BUFFER_SIZE long pieces in binArea ? int nbPieces = len/BUFFER_SIZE; //(16 bits = 2 Bytes) int remainingSize = len%BUFFER_SIZE; for (int j=0;j<nbPieces;j++) { uint16_t *pbuffer = (uint16_t*)buffer; //reinitialize pbuffer for (int i = 0; i < BUFFER_SIZE/2; i++) { *pbuffer = *binArea16 >> 8 | *binArea16 << 8; pbuffer++; binArea16++; } os.write ( buffer, BUFFER_SIZE ); } if ( remainingSize > 0) { uint16_t *pbuffer = (uint16_t*)buffer; //reinitialize pbuffer for (int i = 0; i < remainingSize/2; i++) { *pbuffer = *binArea16 >> 8 | *binArea16 << 8; pbuffer++; binArea16++; } os.write ( buffer, remainingSize ); } return os; #else return os.write(reinterpret_cast<const char*>(val), len); #endif }

GDCM_EXPORT std::ostream & GDCM_NAME_SPACE::binary_write (  std::ostream &  os, const uint8_t *  val, size_t  len )

binary_write binary_write Parameters: os  ostream to write to val  8 bits 'characters' aray to write len  length of the 'value' to be written Definition at line 1074 of file gdcmUtil.cxx. { // We are writting sizeof(char) thus no need to swap bytes return os.write(reinterpret_cast<const char*>(val), len); }

GDCM_EXPORT std::ostream & GDCM_NAME_SPACE::binary_write (  std::ostream &  os, std::string const &  val )

binary_write binary_write Parameters: os  ostream to write to val  std::string value to write Definition at line 1063 of file gdcmUtil.cxx. { return os.write(val.c_str(), val.size()); }

GDCM_EXPORT std::ostream & GDCM_NAME_SPACE::binary_write (  std::ostream &  os, const char *  val )

binary_write binary_write Parameters: os  ostream to write to val  8 bits characters aray to write Definition at line 1053 of file gdcmUtil.cxx. { return os.write(val, strlen(val)); }

GDCM_EXPORT std::ostream & GDCM_NAME_SPACE::binary_write (  std::ostream &  os, const double &  val )

binary_write binary_write Parameters: os  ostream to write to val  double (64 bits) value to write Definition at line 1026 of file gdcmUtil.cxx. { #if defined(GDCM_WORDS_BIGENDIAN) || defined(GDCM_FORCE_BIGENDIAN_EMULATION) double swap = val; char *beg = (char *)&swap; char *end = beg + 7; char t; for (unsigned int i = 0; i<7; i++) { t = *beg; *beg = *end; *end = t; beg++, end--; } return os.write(reinterpret_cast<const char*>(&swap), 8); #else return os.write(reinterpret_cast<const char*>(&val), 8); #endif //GDCM_WORDS_BIGENDIAN }

GDCM_EXPORT std::ostream & GDCM_NAME_SPACE::binary_write (  std::ostream &  os, const uint32_t &  val )

binary_write binary_write Parameters: os  ostream to write to val  32 bits value to write Definition at line 1009 of file gdcmUtil.cxx. { #if defined(GDCM_WORDS_BIGENDIAN) || defined(GDCM_FORCE_BIGENDIAN_EMULATION) uint32_t swap; swap = ( (val<<24) | ((val<<8) & 0x00ff0000) | ((val>>8) & 0x0000ff00) | (val>>24) ); return os.write(reinterpret_cast<const char*>(&swap), 4); #else return os.write(reinterpret_cast<const char*>(&val), 4); #endif //GDCM_WORDS_BIGENDIAN }

GDCM_EXPORT std::ostream & GDCM_NAME_SPACE::binary_write (  std::ostream &  os, const uint16_t &  val )

binary_write binary_write Parameters: os  ostream to write to val  16 bits value to write Definition at line 992 of file gdcmUtil.cxx. Referenced by CloseJpeg(), EncodeWithBasicOffsetTable(), EncodeWithoutBasicOffsetTable(), UpdateJpegFragmentSize(), GDCM_NAME_SPACE::DicomDir::Write(), GDCM_NAME_SPACE::SQItem::WriteContent(), GDCM_NAME_SPACE::DocEntry::WriteContent(), GDCM_NAME_SPACE::DataEntry::WriteContent(), and WriteDICOMItems(). { #if defined(GDCM_WORDS_BIGENDIAN) || defined(GDCM_FORCE_BIGENDIAN_EMULATION) uint16_t swap; swap = ( val << 8 | val >> 8 ); return os.write(reinterpret_cast<const char*>(&swap), 2); #else return os.write(reinterpret_cast<const char*>(&val), 2); #endif //GDCM_WORDS_BIGENDIAN }

bool GDCM_NAME_SPACE::CheckVM (  DataEntry *  entry  )

Definition at line 43 of file gdcmValidator.cxx. References GDCM_NAME_SPACE::Util::CountSubstring(), GDCM_NAME_SPACE::DataEntry::GetString(), GDCM_NAME_SPACE::DocEntry::GetVM(), and GDCM_NAME_SPACE::DocEntry::GetVR(). Referenced by GDCM_NAME_SPACE::Validator::SetInput(). { // Don't waste time checking tags where VM is OB and OW, since we know // it's always 1, whatever the actual length (found on disc) if ( entry->GetVR() == "OB" || entry->GetVR() == "OW" ) return true; const std::string &s = entry->GetString(); unsigned int n = Util::CountSubstring( s , "\\"); n++; // number of '\' + 1 == Value Multiplicity std::string vmFromDict = entry->GetVM(); if ( vmFromDict == "1-n" || vmFromDict == "2-n" || vmFromDict == "3-n" ) return true; unsigned int m; std::istringstream is; is.str( vmFromDict ); is >> m; return n == m; }

void GDCM_NAME_SPACE::CloseJpeg (  std::ostream *  fp, JpegVector &  v )

Definition at line 218 of file gdcmPixelWriteConvert.cxx. References binary_write(), and UpdateJpegFragmentSize(). { // sequence terminator uint16_t group = 0xfffe; uint16_t elem = 0xe0dd; GDCM_NAME_SPACE::binary_write(*fp, group); GDCM_NAME_SPACE::binary_write(*fp, elem); uint32_t length = 0x0; GDCM_NAME_SPACE::binary_write(*fp, length); // Jpeg is done, now update the frag length UpdateJpegFragmentSize(fp, v); }

void GDCM_NAME_SPACE::EncodeWithBasicOffsetTable (  std::ostream *  fp, int  numFrag, size_t &  start )

Definition at line 170 of file gdcmPixelWriteConvert.cxx. References binary_write(). Referenced by GDCM_NAME_SPACE::PixelWriteConvert::SetCompressJPEG2000UserData(), and GDCM_NAME_SPACE::PixelWriteConvert::SetCompressJPEGUserData(). { // Item tag: uint16_t group = 0xfffe; uint16_t elem = 0xe000; GDCM_NAME_SPACE::binary_write(*fp, group); GDCM_NAME_SPACE::binary_write(*fp, elem); // Item Length uint32_t item_length = numFrag*4; // sizeof(uint32_t) GDCM_NAME_SPACE::binary_write(*fp, item_length); // Just prepare the space start = fp->tellp(); //to be able to rewind for(int i=0; i<numFrag;++i) { uint32_t dummy = 0x0000; GDCM_NAME_SPACE::binary_write(*fp, dummy); } }

void GDCM_NAME_SPACE::EncodeWithoutBasicOffsetTable (  std::ostream *  fp, int  numFrag )

Definition at line 154 of file gdcmPixelWriteConvert.cxx. References binary_write(). Referenced by GDCM_NAME_SPACE::PixelWriteConvert::SetCompressJPEG2000UserData(), and GDCM_NAME_SPACE::PixelWriteConvert::SetCompressJPEGUserData(). { assert( numFrag == 1); // Item tag: uint16_t group = 0xfffe; uint16_t elem = 0xe000; GDCM_NAME_SPACE::binary_write(*fp, group); GDCM_NAME_SPACE::binary_write(*fp, elem); // Item Length uint32_t item_length = 0x0000; GDCM_NAME_SPACE::binary_write(*fp, item_length); }

void GDCM_NAME_SPACE::error_callback (  const char *  msg, void *  )

routine for JPEG decompression sample error callback expecting a FILE* client object Definition at line 65 of file gdcmJpeg2000.cxx. Referenced by gdcm_read_JPEG2000_file(). { std::cerr << "Error in gdcmopenjpeg" << msg << std::endl; }

void GDCM_NAME_SPACE::FillDefaultDataDict (  Dict *  d  )

auto generated function, to fill up the Dicom Dictionnary, if relevant file is not found on user's disk Definition at line 2603 of file gdcmDefaultDicts.cxx. References GDCM_NAME_SPACE::Dict::AddEntry(), datadir, GDCM_NAME_SPACE::RefCounter::Delete(), GDCM_NAME_SPACE::DICT_ENTRY::element, GDCM_NAME_SPACE::DICT_ENTRY::group, GDCM_NAME_SPACE::DICT_ENTRY::name, GDCM_NAME_SPACE::DictEntry::New(), GDCM_NAME_SPACE::DICT_ENTRY::vm, and GDCM_NAME_SPACE::DICT_ENTRY::vr. Referenced by GDCM_NAME_SPACE::Dict::Dict(). { DictEntry *e; unsigned int i = 0; DICT_ENTRY n = datadir[i]; while( n.name != 0 ) { e = DictEntry::New( n.group, n.element, n.vr, n.vm, n.name); d->AddEntry( e ); e->Delete(); n = datadir[++i]; } }

void GDCM_NAME_SPACE::FillDefaultDictGroupName (  DictGroupNameHT &  groupName  )

auto generated function, to fill up the 'Group Name' Dictionnary, if relevant file is not found on user's disk Definition at line 2851 of file gdcmDefaultDicts.cxx. Referenced by GDCM_NAME_SPACE::DictGroupName::DictGroupName(). { groupName[0x0000] = "Command"; groupName[0x0002] = "Meta Elements"; groupName[0x0004] = "Directory"; groupName[0x0008] = "Identifing"; groupName[0x0010] = "Patient"; groupName[0x0012] = "Clinical Trial"; groupName[0x0018] = "Acquisition"; groupName[0x0020] = "Relationship"; groupName[0x0028] = "Image Presentation"; groupName[0x0032] = "Study"; groupName[0x0038] = "Visit"; groupName[0x003a] = "Waveform"; groupName[0x0040] = "Procedure"; groupName[0x0050] = "Device"; groupName[0x0054] = "Nuclear Medicine"; groupName[0x2000] = "BFS"; groupName[0x2010] = "BFB"; groupName[0x2020] = "BAB"; groupName[0x2040] = "IOB"; groupName[0x2100] = "Print Job"; groupName[0x2110] = "Printer"; groupName[0x3002] = "Radio Therapy"; groupName[0x3004] = "DVH"; groupName[0x3006] = "SSET"; groupName[0x300a] = "RT"; groupName[0x300b] = "RT"; groupName[0x300e] = "Review"; groupName[0x4000] = "Text"; groupName[0x4008] = "Results"; groupName[0x5000] = "Curves"; groupName[0x5002] = "Curves"; groupName[0x5004] = "Curves"; groupName[0x5006] = "Curves"; groupName[0x5008] = "Curves"; groupName[0x500a] = "Curves"; groupName[0x500c] = "Curves"; groupName[0x500e] = "Curves"; groupName[0x5010] = "Curves"; groupName[0x5012] = "Curves"; groupName[0x5014] = "Curves"; groupName[0x5016] = "Curves"; groupName[0x5018] = "Curves"; groupName[0x501a] = "Curves"; groupName[0x501c] = "Curves"; groupName[0x501e] = "Curves"; groupName[0x6000] = "Overlays"; groupName[0x6002] = "Overlays"; groupName[0x6004] = "Overlays"; groupName[0x6006] = "Overlays"; groupName[0x6008] = "Overlays"; groupName[0x600a] = "Overlays"; groupName[0x600c] = "Overlays"; groupName[0x600e] = "Overlays"; groupName[0x6010] = "Overlays"; groupName[0x6012] = "Overlays"; groupName[0x6014] = "Overlays"; groupName[0x6016] = "Overlays"; groupName[0x6018] = "Overlays"; groupName[0x601a] = "Overlays"; groupName[0x601c] = "Overlays"; groupName[0x601e] = "Overlays"; groupName[0x7fe0] = "Pixels"; }

void GDCM_NAME_SPACE::FillDefaultDIRDict (  DicomDirElement *  dde  )

auto generate function, to fill up the default elements for a DICOMDIR, if relevant file is not found on user's disk Definition at line 3024 of file gdcmDefaultDicts.cxx. References GDCM_NAME_SPACE::DicomDirElement::AddEntry(), dataElement, DD_IMAGE, DD_META, DD_PATIENT, DD_SERIE, DD_STUDY, DD_UNKNOWN, GDCM_NAME_SPACE::DicomElement::Elem, GDCM_NAME_SPACE::ELEMENT::element, GDCM_NAME_SPACE::ELEMENT::group, GDCM_NAME_SPACE::DicomElement::Group, GDCM_NAME_SPACE::ELEMENT::type, GDCM_NAME_SPACE::ELEMENT::value, GDCM_NAME_SPACE::DicomElement::Value, GDCM_NAME_SPACE::ELEMENT::vr, and GDCM_NAME_SPACE::DicomElement::VR. Referenced by GDCM_NAME_SPACE::DicomDirElement::DicomDirElement(). { unsigned int i = 0; ELEMENT e = dataElement[i]; DicomElement elem; DicomDirType type; std::string strType; while( e.type != 0 ) { // Force to use the string comparison operator == strType = e.type; if( strType == "metaElem" ) type = DD_META; else if( strType == "patientElem" ) type = DD_PATIENT; else if( strType == "studyElem" ) type = DD_STUDY; else if( strType == "serieElem" ) type = DD_SERIE; else if( strType == "imageElem" ) type = DD_IMAGE; else type = DD_UNKNOWN; elem.Group = e.group; elem.Elem = e.element; elem.VR = e.vr; elem.Value = e.value; dde->AddEntry( type, elem); e = dataElement[++i]; } }

void GDCM_NAME_SPACE::FillDefaultTSDict (  TSHT &  ts  )

auto generated function, to fill up the Dicom Dictionnary, if relevant file is not found on user's disk Definition at line 2617 of file gdcmDefaultDicts.cxx. Referenced by GDCM_NAME_SPACE::TS::TS(). { ts["1.2.840.10008.1.2"] = "Implicit VR - Little Endian"; ts["1.2.840.10008.1.2.1"] = "Explicit VR - Little Endian"; ts["1.2.840.10008.1.2.1.99"] = "Deflated Explicit VR - Little Endian"; ts["1.2.840.10008.1.2.2"] = "Explicit VR - Big Endian"; ts["1.2.840.10008.1.2.4.50"] = "JPEG Baseline (Process 1)"; ts["1.2.840.10008.1.2.4.51"] = "JPEG Extended (Process 2 & 4)"; ts["1.2.840.10008.1.2.4.52"] = "JPEG Extended (Process 3 & 5) (Retired)"; ts["1.2.840.10008.1.2.4.53"] = "JPEG Spectral Selection, Non-Hierarchical (Process 6 & 8) (Retired)"; ts["1.2.840.10008.1.2.4.54"] = "JPEG Spectral Selection, Non-Hierarchical (Process 7 & 9) (Retired)"; ts["1.2.840.10008.1.2.4.55"] = "JPEG Full Progression, Non-Hierarchical (Process 10 & 12) (Retired)"; ts["1.2.840.10008.1.2.4.56"] = "JPEG Full Progression, Non-Hierarchical (Process 11 & 13) (Retired)"; ts["1.2.840.10008.1.2.4.57"] = "JPEG Lossless Non-Hierarchical (Process 14)"; ts["1.2.840.10008.1.2.4.58"] = "JPEG Lossless Non-Hierarchical (Process 15) (Retired)"; ts["1.2.840.10008.1.2.4.59"] = "JPEG Extended Hierarchical (Process 16 & 18) (Retired)"; ts["1.2.840.10008.1.2.4.60"] = "JPEG Spectral Selection, Non-Hierarchical (Process 17 & 19) (Retired)"; ts["1.2.840.10008.1.2.4.61"] = "JPEG Spectral Selection, Hierarchical (Process 20 & 22) (Retired)"; ts["1.2.840.10008.1.2.4.62"] = "JPEG Spectral Selection, Hierarchical (Process 21 & 23) (Retired)"; ts["1.2.840.10008.1.2.4.63"] = "JPEG Full Progression, Hierarchical (Process 24 & 26) (Retired)"; ts["1.2.840.10008.1.2.4.64"] = "JPEG Full Progression, Hierarchical (Process 25 & 27) (Retired)"; ts["1.2.840.10008.1.2.4.65"] = "JPEG Lossless, Hierarchical (Process 28) (Retired)"; ts["1.2.840.10008.1.2.4.66"] = "JPEG Lossless, Hierarchical (Process 29) (Retired))"; ts["1.2.840.10008.1.2.4.70"] = "JPEG Lossless, Non-Hierarchical, First-Order Prediction (Process 14 [Selection Value 1])"; ts["1.2.840.10008.1.2.4.80"] = "JPEG-LS Lossless Image Compression"; ts["1.2.840.10008.1.2.4.81"] = "JPEG-LS Lossy (Near-Lossless) Image Compression"; ts["1.2.840.10008.1.2.4.90"] = "JPEG 2000 Image Compression (Lossless Only)"; ts["1.2.840.10008.1.2.4.91"] = "JPEG 2000 Image Compression"; ts["1.2.840.10008.1.2.4.100"] = "MPEG2 Main Profile @ Main Level"; ts["1.2.840.10008.1.2.5"] = "RLE Lossless"; ts["1.2.840.113619.5.2"] = "Implicit VR - Big Endian (G.E Private)"; ts["1.2.528.1.1001.4.1.1.2"] = "Explicit VR, AMI Wavelet Progressive Lossy Compression (G.E Private) "; ts["1.2.528.1.1001.4.2.1.1"] = "Explicit VR, AMI JPEG Lossy Compression 8-bit (G.E Private)"; ts["1.2.528.1.1001.4.2.1.2"] = "Explicit VR, AMI JPEG Lossy Compression 12-bit (G.E Private)"; ts["1.2.528.1.1001.4.4.1"] = "Explicit VR, AMI ZLIB Lossless Compression (G.E Private)"; ts["1.2.840.10008.1.3.10"] = "Media Storage Directory Storage"; ts["1.2.840.10008.1.4.1.1"] = "Talairach Brain Atlas Frame of Reference"; ts["1.2.840.10008.1.4.1.2"] = "SPM2 T1 Frame of Reference"; ts["1.2.840.10008.1.4.1.3"] = "SPM2 T2 Frame of Reference"; ts["1.2.840.10008.1.4.1.4"] = "SPM2 PD Frame of Reference"; ts["1.2.840.10008.1.4.1.5"] = "SPM2 EPI Frame of Reference"; ts["1.2.840.10008.1.4.1.6"] = "SPM2 FIL T1 Frame of Reference"; ts["1.2.840.10008.1.4.1.7"] = "SPM2 PET Frame of Reference"; ts["1.2.840.10008.1.4.1.8"] = "SPM2 TRANSM Frame of Reference"; ts["1.2.840.10008.1.4.1.9"] = "SPM2 SPECT Frame of Reference"; ts["1.2.840.10008.1.4.1.10"] = "SPM2 GRAY Frame of Reference"; ts["1.2.840.10008.1.4.1.11"] = "SPM2 WHITE Frame of Reference"; ts["1.2.840.10008.1.4.1.12"] = "SPM2 CSF Frame of Reference"; ts["1.2.840.10008.1.4.1.13"] = "SPM2 BRAINMASK Frame of Reference"; ts["1.2.840.10008.1.4.1.14"] = "SPM2 AVG305T1 Frame of Reference"; ts["1.2.840.10008.1.4.1.15"] = "SPM2 AVG152T1 Frame of Reference"; ts["1.2.840.10008.1.4.1.16"] = "SPM2 AVG152T2 Frame of Reference"; ts["1.2.840.10008.1.4.1.17"] = "SPM2 AVG152PD Frame of Reference"; ts["1.2.840.10008.1.4.1.18"] = "SPM2 SINGLESUBJT1 Frame of Reference"; ts["1.2.840.10008.1.4.2.1"] = "ICBM 452 T1 Frame of Reference"; ts["1.2.840.10008.1.4.2.2"] = "ICBM Single Subject MRI Frame of Reference"; ts["1.2.840.10008.1.1"] = "Verification SOP Class"; ts["1.2.840.10008.1.9"] = "Basic Study Content Notification SOP Class"; ts["1.2.840.10008.1.20.1"] = "Image Commitment Push Model SOP Class"; ts["1.2.840.10008.1.20.1.1"] = "Image Commitment Push Model SOP Instance"; ts["1.2.840.10008.1.20.2"] = "Image Commitment Push Model SOP Class (Retired)"; ts["1.2.840.10008.1.20.2.1"] = "Image Commitment Push Model SOP Instance (Retired)"; ts["1.2.840.10008.1.40"] = "Procedural Event Logging SOP Class"; ts["1.2.840.10008.1.40.1"] = "Procedural Event Logging SOP Instance"; ts["1.2.840.10008.2.16.4"] = "DICOM Controlled Terminology"; ts["1.2.840.10008.3.1.1.1"] = "DICOM Application Context Name"; ts["1.2.840.10008.3.1.2.1.1"] = "Detached Patient Management SOP Class"; ts["1.2.840.10008.3.1.2.1.4"] = "Detached Patient Management Meta SOP Class"; ts["1.2.840.10008.3.1.2.2.1"] = "Detached Visit Management SOP Class"; ts["1.2.840.10008.3.1.2.3.1"] = "Detached Study Management SOP Class"; ts["1.2.840.10008.3.1.2.3.2"] = "Study Component Management SOP Class"; ts["1.2.840.10008.3.1.2.3.3"] = "Modality Performed Procedure Step SOP Class"; ts["1.2.840.10008.3.1.2.3.4"] = "Modality Performed Procedure Step Retrieve SOP Class"; ts["1.2.840.10008.3.1.2.3.5"] = "Modality Performed Procedure Step Notification SOP Class"; ts["1.2.840.10008.3.1.2.5.1"] = "Detached Results Management SOP Class"; ts["1.2.840.10008.3.1.2.5.4"] = "Detached Results Management Meta SOP Class"; ts["1.2.840.10008.3.1.2.5.5"] = "Detached Study Management Meta SOP Class"; ts["1.2.840.10008.3.1.2.6.1"] = "Detached Interpretation Management SOP Class"; ts["1.2.840.10008.4.2"] = "Storage Device Class"; ts["1.2.840.10008.5.1.1.1"] = "Basic Film Session SOP Class"; ts["1.2.840.10008.5.1.1.2"] = "Basic Film Box SOP Class"; ts["1.2.840.10008.5.1.1.4"] = "Basic Gray Scale Image Box SOP Class"; ts["1.2.840.10008.5.1.1.4.1"] = "Basic Color Image Box SOP Class"; ts["1.2.840.10008.5.1.1.4.2"] = "Referenced Image Box SOP Class (Retired)"; ts["1.2.840.10008.5.1.1.9"] = "Basic Gray Scale Print Management Meta SOP Class"; ts["1.2.840.10008.5.1.1.9.1"] = "Referenced Gray Scale Print Management Meta SOP Class(Retired)"; ts["1.2.840.10008.5.1.1.14"] = "Print Job SOP Class"; ts["1.2.840.10008.5.1.1.15"] = "Basic Annotation Box SOP Class"; ts["1.2.840.10008.5.1.1.16"] = "Printer SOP Class"; ts["1.2.840.10008.5.1.1.16.376"] = "Printer Configuration Retrieval SOP Class"; ts["1.2.840.10008.5.1.1.17"] = "Printer SOP Instance"; ts["1.2.840.10008.5.1.1.17.376"] = "Printer Configuration Retrieval SOP Instance"; ts["1.2.840.10008.5.1.1.18"] = "Basic Color Print Management Meta SOP Class"; ts["1.2.840.10008.5.1.1.18.1"] = "Referenced Color Print Management Meta SOP Class (Retired)"; ts["1.2.840.10008.5.1.1.22"] = "VOI LUT Box SOP Class"; ts["1.2.840.10008.5.1.1.23"] = "Presentation LUT Box SOP Class"; ts["1.2.840.10008.5.1.1.24"] = "Image Overlay Box SOP Class (Retired)"; ts["1.2.840.10008.5.1.1.24.1"] = "Basic Print Image Overlay Box SOP Class"; ts["1.2.840.10008.5.1.1.25"] = "Print Queue SOP Instance"; ts["1.2.840.10008.5.1.1.26"] = "Print Queue Management SOP Class"; ts["1.2.840.10008.5.1.1.27"] = "Stored Print Storage SOP Class"; ts["1.2.840.10008.5.1.1.29"] = "Hardcopy Grayscale Image Storage SOP Class"; ts["1.2.840.10008.5.1.1.30"] = "Hardcopy Color Image Storage SOP Class"; ts["1.2.840.10008.5.1.1.31"] = "Pull Print Request SOP Class"; ts["1.2.840.10008.5.1.1.32"] = "Pull Stored Print Management Meta SOP Class"; ts["1.2.840.10008.5.1.1.33"] = "Media Creation Management SOP Class UID"; ts["1.2.840.10008.5.1.4.1.1.1"] = "Computed Radiography Image Storage"; ts["1.2.840.10008.5.1.4.1.1.1.1"] = "Digital X-Ray Image Storage - For Presentation"; ts["1.2.840.10008.5.1.4.1.1.1.1.1"] = "Digital X-Ray Image Storage - For Processing"; ts["1.2.840.10008.5.1.4.1.1.1.2"] = "Digital Mammography Image Storage - For Presentation"; ts["1.2.840.10008.5.1.4.1.1.1.2.1"] = "Digital Mammography Image Storage - For Processing"; ts["1.2.840.10008.5.1.4.1.1.1.3"] = "Digital Intra-oral X-ray Image Storage - For Presentation"; ts["1.2.840.10008.5.1.4.1.1.1.3.1"] = "Digital Intra-oral X-Ray Image Storage - For Processing"; ts["1.2.840.10008.5.1.4.1.1.2"] = "CT Image Storage"; ts["1.2.840.10008.5.1.4.1.1.2.1"] = "Enhanced CT Image Storage"; ts["1.2.840.10008.5.1.4.1.1.3"] = "Ultrasound Multi-Frame Image Storage (Retired)"; ts["1.2.840.10008.5.1.4.1.1.3.1"] = "Ultrasound Multi-Frame Image Storage"; ts["1.2.840.10008.5.1.4.1.1.4"] = "MR Image Storage"; ts["1.2.840.10008.5.1.4.1.1.4.1"] = "Enhanced MR Image Storage"; ts["1.2.840.10008.5.1.4.1.1.4.2"] = "MR Spectroscopy Storage"; ts["1.2.840.10008.5.1.4.1.1.5"] = "Nuclear Medicine Image Storage (Retired)"; ts["1.2.840.10008.5.1.4.1.1.6"] = "Ultrasound Image Storage (Retired)"; ts["1.2.840.10008.5.1.4.1.1.6.1"] = "Ultrasound Image Storage"; ts["1.2.840.10008.5.1.4.1.1.7"] = "Secondary Capture Image Storage"; ts["1.2.840.10008.5.1.4.1.1.7.1"] = "Multi-frame Single Bit Secondary Capture Image Storage"; ts["1.2.840.10008.5.1.4.1.1.7.2"] = "Multi-frame Grayscale Byte Secondary Capture Image Storage"; ts["1.2.840.10008.5.1.4.1.1.7.3"] = "Multi-frame Grayscale Word Secondary Capture Image Storage"; ts["1.2.840.10008.5.1.4.1.1.7.4"] = "Multi-frame True Color Secondary Capture Image Storage"; ts["1.2.840.10008.5.1.4.1.1.8"] = "Standalone Overlay Storage"; ts["1.2.840.10008.5.1.4.1.1.9"] = "Standalone Curve Storage"; ts["1.2.840.10008.5.1.4.1.1.9.1.1"] = "12-Lead ECG Waveform Storage"; ts["1.2.840.10008.5.1.4.1.1.9.1.2"] = "General ECG Waveform Storage"; ts["1.2.840.10008.5.1.4.1.1.9.1.3"] = "Ambulatory ECG Waveform Storage"; ts["1.2.840.10008.5.1.4.1.1.9.2.1"] = "Hemodynamic Waveform Storage"; ts["1.2.840.10008.5.1.4.1.1.9.3.1"] = "Cardiac Electrophysiology Waveform Storage"; ts["1.2.840.10008.5.1.4.1.1.9.4.1"] = "Basic Voice Audio Waveform Storage"; ts["1.2.840.10008.5.1.4.1.1.10"] = "Standalone Modality LUT Storage"; ts["1.2.840.10008.5.1.4.1.1.11"] = "Standalone VOI LUT Storage"; ts["1.2.840.10008.5.1.4.1.1.11.1"] = "Grayscale Softcopy Presentation State Storage SOP Class"; ts["1.2.840.10008.5.1.4.1.1.12.1"] = "X-Ray Angiographic Image Storage"; ts["1.2.840.10008.5.1.4.1.1.12.2"] = "X-Ray Radiofluoroscoping Image Storage"; ts["1.2.840.10008.5.1.4.1.1.12.3"] = "X-Ray Angiographic Bi-Plane Image Storage (Retired)"; ts["1.2.840.10008.5.1.4.1.1.20"] = "Nuclear Medicine Image Storage"; ts["1.2.840.10008.5.1.4.1.1.66"] = "Raw Data Storage"; ts["1.2.840.10008.5.1.4.1.1.66.1"] = "Spacial Registration Storage"; ts["1.2.840.10008.5.1.4.1.1.66.2"] = "Spacial Fiducials Storage"; ts["1.2.840.10008.5.1.4.1.1.77.1"] = "VL Image Storage (Retired)"; ts["1.2.840.10008.5.1.4.1.1.77.2"] = "VL MultiFrame Image Storage (Retired)"; ts["1.2.840.10008.5.1.4.1.1.77.1.1"] = "VL Endoscoping Image Storage"; ts["1.2.840.10008.5.1.4.1.1.77.1.1.1"] = "Video Endoscoping Image Storage"; ts["1.2.840.10008.5.1.4.1.1.77.1.2"] = "VL Microscoping Image Storage"; ts["1.2.840.10008.5.1.4.1.1.77.1.2.1"] = "Video Microscoping Image Storage"; ts["1.2.840.10008.5.1.4.1.1.77.1.3"] = "VL Slide-Coordinates Microscoping Image Storage"; ts["1.2.840.10008.5.1.4.1.1.77.1.4"] = "VL Photographic Image Storage"; ts["1.2.840.10008.5.1.4.1.1.77.1.4.1"] = "Video Photographic Image Storage"; ts["1.2.840.10008.5.1.4.1.1.77.1.5.1"] = "Ophthalmic Photography 8 Bit Image Storage"; ts["1.2.840.10008.5.1.4.1.1.77.1.5.2"] = "Ophthalmic Photography 16 Bit Image Storage"; ts["1.2.840.10008.5.1.4.1.1.77.1.5.3"] = "Stereometric Relationship Storage"; ts["1.2.840.10008.5.1.4.1.1.88.1"] = "SR Text Storage"; ts["1.2.840.10008.5.1.4.1.1.88.2"] = "SR Audio Storage"; ts["1.2.840.10008.5.1.4.1.1.88.3"] = "SR Detail Storage"; ts["1.2.840.10008.5.1.4.1.1.88.4"] = "SR Comprehensive Storage"; ts["1.2.840.10008.5.1.4.1.1.88.11"] = "Basic Text SR"; ts["1.2.840.10008.5.1.4.1.1.88.22"] = "Enhanced SR"; ts["1.2.840.10008.5.1.4.1.1.88.33"] = "Comprehensive SR"; ts["1.2.840.10008.5.1.4.1.1.88.40"] = "Procedure Log Storage"; ts["1.2.840.10008.5.1.4.1.1.88.50"] = "Mammography CAD SR"; ts["1.2.840.10008.5.1.4.1.1.88.59"] = "Key Object Selection Document"; ts["1.2.840.10008.5.1.4.1.1.88.65"] = "Chest CAD SR"; ts["1.2.840.10008.5.1.4.1.1.104.1"] = "Encapsulated PDF Storage"; ts["1.2.840.10008.5.1.4.1.1.128"] = "Positron Emission Tomography Image Storage"; ts["1.2.840.10008.5.1.4.1.1.129"] = "Standalone PET Curve Storage"; ts["1.2.840.10008.5.1.4.1.1.481.1"] = "RT Image Storage"; ts["1.2.840.10008.5.1.4.1.1.481.2"] = "RT Dose Storage"; ts["1.2.840.10008.5.1.4.1.1.481.3"] = "RT Structure Set Storage"; ts["1.2.840.10008.5.1.4.1.1.481.4"] = "RT Beams Treatment Record Storage"; ts["1.2.840.10008.5.1.4.1.1.481.5"] = "RT Plan Storage"; ts["1.2.840.10008.5.1.4.1.1.481.6"] = "RT Brachy Treatment Record Storage"; ts["1.2.840.10008.5.1.4.1.1.481.7"] = "RT Treatment Summary Record Storage"; ts["1.2.840.10008.5.1.4.1.2.1.1"] = "Patient Root Query/Retrieve Information Model - FIND"; ts["1.2.840.10008.5.1.4.1.2.1.2"] = "Patient Root Query/Retrieve Information Model - MOVE"; ts["1.2.840.10008.5.1.4.1.2.1.3"] = "Patient Root Query/Retrieve Information Model - GET"; ts["1.2.840.10008.5.1.4.1.2.2.1"] = "Study Root Query/Retrieve Information Model - FIND"; ts["1.2.840.10008.5.1.4.1.2.2.2"] = "Study Root Query/Retrieve Information Model - MOVE"; ts["1.2.840.10008.5.1.4.1.2.2.3"] = "Study Root Query/Retrieve Information Model - GET"; ts["1.2.840.10008.5.1.4.1.2.3.1"] = "Patient/Study Only Query/Retrieve Information Model - FIND"; ts["1.2.840.10008.5.1.4.1.2.3.2"] = "Patient/Study Only Query/Retrieve Information Model - GET"; ts["1.2.840.10008.5.1.4.1.2.3.3"] = "Patient/Study Only Query/Retrieve Information Model - MOVE"; ts["1.2.840.10008.5.1.4.31"] = "Modality Worklist Information Model - FIND"; ts["1.2.840.10008.5.1.4.32.1"] = "General Purpose Worklist Information Model - FIND"; ts["1.2.840.10008.5.1.4.32.2"] = "General Purpose Scheduled Procedure Step SOP Class"; ts["1.2.840.10008.5.1.4.32.3"] = "General Purpose Performed Procedure Step SOP Class"; ts["1.2.840.10008.5.1.4.32"] = "General Purpose Worklist Management Meta SOP Class"; ts["1.2.840.10008.5.1.4.33"] = "Instance Availability Notification SOP Class"; ts["1.2.840.10008.5.1.4.37.1"] = "General Relevant Patient Information Query"; ts["1.2.840.10008.5.1.4.37.2"] = "Breast Imaging Relevant Patient Information Query"; ts["1.2.840.10008.5.1.4.37.3"] = "Cardiac Relevant Patient Information Query"; ts["1.3.12.2.1107.5.9.1"] = "CSA Non-Image Storage"; ts["1.3.46.670589.2.5.1.1"] = "3D Subpage Storage"; }

void GDCM_NAME_SPACE::FillDefaultVRDict (  VRHT &  vr  )

auto generated function, to fill up the 'Value Representation' Dictionnary, if relevant file is not found on user's disk Definition at line 2819 of file gdcmDefaultDicts.cxx. Referenced by GDCM_NAME_SPACE::VR::VR(). { vr["AE"] = "Application Entity"; vr["AS"] = "Age String"; vr["AT"] = "Attribute Tag"; vr["CS"] = "Code String"; vr["DA"] = "Date"; vr["DS"] = "Decimal String"; vr["DT"] = "Date Time"; vr["FL"] = "Floating Point Single"; vr["FD"] = "Floating Point Double"; vr["IS"] = "Integer String"; vr["LO"] = "Long String"; vr["LT"] = "Long Text"; vr["OB"] = "Other Byte String"; vr["OW"] = "Other Word String"; vr["OF"] = "Other Float String"; vr["PN"] = "Person Name"; vr["SH"] = "Short String"; vr["SL"] = "Signed Long"; vr["SQ"] = "Sequence of Items"; vr["SS"] = "Signed Short"; vr["ST"] = "Short Text"; vr["TM"] = "Time"; vr["UI"] = "Unique Identifier"; vr["UL"] = "Unsigned Long"; vr["UN"] = "Unknown"; vr["US"] = "Unsigned Short"; vr["UT"] = "Unlimited Text"; }

bool GDCM_NAME_SPACE::gdcm_read_JPEG2000_file (  std::ifstream *  fp, void *  image_buffer )

bool GDCM_NAME_SPACE::gdcm_read_JPEG2000_file (  void *  raw, char *  inputdata, size_t  inputlength )

Definition at line 102 of file gdcmJpeg2000.cxx. References error_callback(), info_callback(), int_ceildivpow2(), J2K_CFMT, PGX_DFMT, and warning_callback(). Referenced by GDCM_NAME_SPACE::PixelReadConvert::ReadAndDecompressJPEGFile(). { opj_dparameters_t parameters; /* decompression parameters */ opj_event_mgr_t event_mgr; /* event manager */ opj_image_t *image; opj_dinfo_t* dinfo; /* handle to a decompressor */ opj_cio_t *cio; unsigned char *src = (unsigned char*)inputdata; int file_length = static_cast< int >( inputlength ); /* configure the event callbacks (not required) */ memset(&event_mgr, 0, sizeof(opj_event_mgr_t)); event_mgr.error_handler = error_callback; event_mgr.warning_handler = warning_callback; event_mgr.info_handler = info_callback; /* set decoding parameters to default values */ opj_set_default_decoder_parameters(&parameters); // default blindly copied parameters.cp_layer=0; parameters.cp_reduce=0; // parameters.decod_format=-1; // parameters.cod_format=-1; /* JPEG-2000 codestream */ parameters.decod_format = J2K_CFMT; assert(parameters.decod_format == J2K_CFMT); parameters.cod_format = PGX_DFMT; assert(parameters.cod_format == PGX_DFMT); /* get a decoder handle */ dinfo = opj_create_decompress(CODEC_J2K); /* catch events using our callbacks and give a local context */ opj_set_event_mgr((opj_common_ptr)dinfo, &event_mgr, NULL); /* setup the decoder decoding parameters using user parameters */ opj_setup_decoder(dinfo, &parameters); /* open a byte stream */ cio = opj_cio_open((opj_common_ptr)dinfo, src, file_length); /* decode the stream and fill the image structure */ image = opj_decode(dinfo, cio); if(!image) { opj_destroy_decompress(dinfo); opj_cio_close(cio); return 1; } /* close the byte stream */ opj_cio_close(cio); /* free the memory containing the code-stream */ delete[] src; //FIXME // Copy buffer for (int compno = 0; compno < image->numcomps; compno++) { opj_image_comp_t *comp = &image->comps[compno]; int w = image->comps[compno].w; int wr = int_ceildivpow2(image->comps[compno].w, image->comps[compno].factor); //int h = image.comps[compno].h; int hr = int_ceildivpow2(image->comps[compno].h, image->comps[compno].factor); if (comp->prec <= 8) { uint8_t *data8 = (uint8_t*)raw + compno; for (int i = 0; i < wr * hr; i++) { int v = image->comps[compno].data[i / wr * w + i % wr]; *data8 = (uint8_t)v; data8 += image->numcomps; } } else if (comp->prec <= 16) { uint16_t *data16 = (uint16_t*)raw + compno; for (int i = 0; i < wr * hr; i++) { int v = image->comps[compno].data[i / wr * w + i % wr]; *data16 = (uint16_t)v; data16 += image->numcomps; } } else { uint32_t *data32 = (uint32_t*)raw + compno; for (int i = 0; i < wr * hr; i++) { int v = image->comps[compno].data[i / wr * w + i % wr]; *data32 = (uint32_t)v; data32 += image->numcomps; } } //free(image.comps[compno].data); } /* free remaining structures */ if(dinfo) { opj_destroy_decompress(dinfo); } /* free image data structure */ opj_image_destroy(image); return true; }

bool GDCM_NAME_SPACE::gdcm_read_JPEGLS_file (  std::ifstream *  fp, void *  image_buffer )

routine for JPEG decompression. WARNING LPEG-LS is NOT the 'classical' jpeg lossless. See : http://www.jpeg.org/jpeg/jpegls.html gdcm DOES deal with 'classical' jpeg lossless Parameters: fp  pointer to an already open file descriptor JPEG-LS encoded image image_buffer  to receive uncompressed pixels Returns: 1 on success, 0 on error Warning: : not yet made Definition at line 41 of file gdcmJpegLS.cxx. References gdcmWarningMacro. { (void)fp; (void)image_buffer; gdcmWarningMacro( "Sorry JPEG-LS File not yet taken into account" ); return false; }

bool GDCM_NAME_SPACE::gdcm_write_JPEG2000_file (  std::ostream *  fp, char *  inputdata, size_t  inputlength, int  image_width, int  image_height, int  numZ, int  sample_pixel, int  bitsallocated, int  sign, int  quality )

Definition at line 331 of file gdcmJpeg2000.cxx. References error_callback(), info_callback(), J2K_CFMT, rawtoimage(), and warning_callback(). Referenced by GDCM_NAME_SPACE::PixelWriteConvert::SetCompressJPEG2000UserData(). { (void)numZ; bool bSuccess; //bool delete_comment = true; opj_cparameters_t parameters; /* compression parameters */ opj_event_mgr_t event_mgr; /* event manager */ opj_image_t *image = NULL; //quality = 100; /* configure the event callbacks (not required) setting of each callback is optionnal */ memset(&event_mgr, 0, sizeof(opj_event_mgr_t)); event_mgr.error_handler = error_callback; event_mgr.warning_handler = warning_callback; event_mgr.info_handler = info_callback; /* set encoding parameters to default values */ memset(&parameters, 0, sizeof(parameters)); opj_set_default_encoder_parameters(&parameters); /* if no rate entered, lossless by default */ parameters.tcp_rates[0] = 0; parameters.tcp_numlayers = 1; parameters.cp_disto_alloc = 1; if(parameters.cp_comment == NULL) { const char comment[] = "Created by GDCM/OpenJPEG version 1.0"; parameters.cp_comment = (char*)malloc(strlen(comment) + 1); strcpy(parameters.cp_comment, comment); /* no need to delete parameters.cp_comment on exit */ //delete_comment = false; } /* decode the source image */ /* ----------------------- */ image = rawtoimage((char*)inputdata, &parameters, static_cast<int>( inputlength ), image_width, image_height, sample_pixel, bitsallocated, sign, quality); if (!image) { return 1; } /* encode the destination image */ /* ---------------------------- */ parameters.cod_format = J2K_CFMT; /* J2K format output */ int codestream_length; opj_cio_t *cio = NULL; //FILE *f = NULL; /* get a J2K compressor handle */ opj_cinfo_t* cinfo = opj_create_compress(CODEC_J2K); /* catch events using our callbacks and give a local context */ opj_set_event_mgr((opj_common_ptr)cinfo, &event_mgr, stderr); /* setup the encoder parameters using the current image and using user parameters */ opj_setup_encoder(cinfo, &parameters, image); /* open a byte stream for writing */ /* allocate memory for all tiles */ cio = opj_cio_open((opj_common_ptr)cinfo, NULL, 0); /* encode the image */ bSuccess = opj_encode(cinfo, cio, image, parameters.index); if (!bSuccess) { opj_cio_close(cio); fprintf(stderr, "failed to encode image\n"); return 1; } codestream_length = cio_tell(cio); /* write the buffer to disk */ //f = fopen(parameters.outfile, "wb"); //if (!f) { // fprintf(stderr, "failed to open %s for writing\n", parameters.outfile); // return 1; //} //fwrite(cio->buffer, 1, codestream_length, f); //#define MDEBUG #ifdef MDEBUG static int c = 0; std::ostringstream os; os << "/tmp/debug"; os << c; c++; os << ".j2k"; std::ofstream debug(os.str().c_str()); debug.write((char*)(cio->buffer), codestream_length); debug.close(); #endif fp->write((char*)(cio->buffer), codestream_length); //fclose(f); /* close and free the byte stream */ opj_cio_close(cio); /* free remaining compression structures */ opj_destroy_compress(cinfo); /* free user parameters structure */ //if(delete_comment) { if(parameters.cp_comment) free(parameters.cp_comment); //} if(parameters.cp_matrice) free(parameters.cp_matrice); /* free image data */ opj_image_destroy(image); return true; }

bool GDCM_NAME_SPACE::gdcm_write_JPEG_file12 (  std::ostream *  fp, char *  inputdata, size_t  inputlength, int  image_width, int  image_height, int  numZ, int  sample_pixel, int  bitsallocated, int  quality )

Referenced by GDCM_NAME_SPACE::PixelWriteConvert::SetCompressJPEGUserData().

bool GDCM_NAME_SPACE::gdcm_write_JPEG_file16 (  std::ostream *  fp, char *  inputdata, size_t  inputlength, int  image_width, int  image_height, int  numZ, int  sample_pixel, int  bitsallocated, int  quality )

Referenced by GDCM_NAME_SPACE::PixelWriteConvert::SetCompressJPEGUserData().

bool GDCM_NAME_SPACE::gdcm_write_JPEG_file8 (  std::ostream *  fp, char *  inputdata, size_t  inputlength, int  image_width, int  image_height, int  numZ, int  sample_pixel, int  bitsallocated, int  quality )

Referenced by GDCM_NAME_SPACE::PixelWriteConvert::SetCompressJPEGUserData().

int GDCM_NAME_SPACE::getlastdigit (  unsigned char *  data  )  [inline]

Mini function to return the last digit from a number express in base 256 pre condition data contain an array of 6 unsigned char post condition carry contain the last digit. Definition at line 876 of file gdcmUtil.cxx. Referenced by GDCM_NAME_SPACE::Util::GetMACAddress(). { int extended, carry = 0; for(int i=0;i<6;i++) { extended = (carry << 8) + data[i]; data[i] = extended / 10; carry = extended % 10; } return carry; }

int GDCM_NAME_SPACE::GetMacAddrSys (  unsigned char *  addr  )

gets current M.A.C adress (for internal use only) Todo: FIXME I wish we don't pollute command line applications when no Ethernet cable ! Definition at line 598 of file gdcmUtil.cxx. Referenced by GDCM_NAME_SPACE::Util::GetMACAddress(). { #ifdef _WIN32 WSADATA WinsockData; if ( (WSAStartup(MAKEWORD(2, 0), &WinsockData)) != 0 ) { std::cerr << "in Get MAC Adress (internal) : This program requires Winsock 2.x!" << std::endl; return -1; } HANDLE PollForTrapEvent; AsnObjectIdentifier SupportedView; UINT OID_ifEntryType[] = { 1, 3, 6, 1, 2, 1, 2, 2, 1, 3 }; UINT OID_ifEntryNum[] = { 1, 3, 6, 1, 2, 1, 2, 1 }; UINT OID_ipMACEntAddr[] = { 1, 3, 6, 1, 2, 1, 2, 2, 1, 6 }; AsnObjectIdentifier MIB_ifMACEntAddr = { sizeof(OID_ipMACEntAddr) / sizeof(UINT), OID_ipMACEntAddr }; AsnObjectIdentifier MIB_ifEntryType = { sizeof(OID_ifEntryType) / sizeof(UINT), OID_ifEntryType }; AsnObjectIdentifier MIB_ifEntryNum = { sizeof(OID_ifEntryNum) / sizeof(UINT), OID_ifEntryNum }; RFC1157VarBindList varBindList; RFC1157VarBind varBind[2]; AsnInteger errorStatus; AsnInteger errorIndex; AsnObjectIdentifier MIB_NULL = { 0, 0 }; int ret; int dtmp; int j = 0; // Load the SNMP dll and get the addresses of the functions necessary HINSTANCE m_hInst = LoadLibrary("inetmib1.dll"); if (m_hInst < (HINSTANCE) HINSTANCE_ERROR) { return -1; } pSnmpExtensionInit m_Init = (pSnmpExtensionInit) GetProcAddress(m_hInst, "SnmpExtensionInit"); pSnmpExtensionQuery m_Query = (pSnmpExtensionQuery) GetProcAddress(m_hInst, "SnmpExtensionQuery"); m_Init(GetTickCount(), &PollForTrapEvent, &SupportedView); /* Initialize the variable list to be retrieved by m_Query */ varBindList.list = varBind; varBind[0].name = MIB_NULL; varBind[1].name = MIB_NULL; // Copy in the OID to find the number of entries in the // Inteface table varBindList.len = 1; // Only retrieving one item SNMP_oidcpy(&varBind[0].name, &MIB_ifEntryNum); m_Query(ASN_RFC1157_GETNEXTREQUEST, &varBindList, &errorStatus, &errorIndex); // printf("# of adapters in this system : %i\n", // varBind[0].value.asnValue.number); varBindList.len = 2; // Copy in the OID of ifType, the type of interface SNMP_oidcpy(&varBind[0].name, &MIB_ifEntryType); // Copy in the OID of ifPhysAddress, the address SNMP_oidcpy(&varBind[1].name, &MIB_ifMACEntAddr); do { // Submit the query. Responses will be loaded into varBindList. // We can expect this call to succeed a # of times corresponding // to the # of adapters reported to be in the system ret = m_Query(ASN_RFC1157_GETNEXTREQUEST, &varBindList, &errorStatus, &errorIndex); if (!ret) { ret = 1; } else { // Confirm that the proper type has been returned ret = SNMP_oidncmp(&varBind[0].name, &MIB_ifEntryType, MIB_ifEntryType.idLength); } if (!ret) { j++; dtmp = varBind[0].value.asnValue.number; // Type 6 describes ethernet interfaces if (dtmp == 6) { // Confirm that we have an address here ret = SNMP_oidncmp(&varBind[1].name, &MIB_ifMACEntAddr, MIB_ifMACEntAddr.idLength); if ( !ret && varBind[1].value.asnValue.address.stream != NULL ) { if ( (varBind[1].value.asnValue.address.stream[0] == 0x44) && (varBind[1].value.asnValue.address.stream[1] == 0x45) && (varBind[1].value.asnValue.address.stream[2] == 0x53) && (varBind[1].value.asnValue.address.stream[3] == 0x54) && (varBind[1].value.asnValue.address.stream[4] == 0x00) ) { // Ignore all dial-up networking adapters std::cerr << "in Get MAC Adress (internal) : Interface #" << j << " is a DUN adapter\n"; continue; } if ( (varBind[1].value.asnValue.address.stream[0] == 0x00) && (varBind[1].value.asnValue.address.stream[1] == 0x00) && (varBind[1].value.asnValue.address.stream[2] == 0x00) && (varBind[1].value.asnValue.address.stream[3] == 0x00) && (varBind[1].value.asnValue.address.stream[4] == 0x00) && (varBind[1].value.asnValue.address.stream[5] == 0x00) ) { // Ignore NULL addresses returned by other network // interfaces std::cerr << "in Get MAC Adress (internal) : Interface #" << j << " is a NULL address\n"; continue; } memcpy( addr, varBind[1].value.asnValue.address.stream, 6); } } } } while (!ret); // Free the bindings SNMP_FreeVarBind(&varBind[0]); SNMP_FreeVarBind(&varBind[1]); return 0; #endif //Win32 version #if defined(__sgi) return SGIGetMacAddress(addr); #endif // __sgi // implementation for POSIX system #if defined(CMAKE_HAVE_NET_IF_ARP_H) && defined(__sun) //The POSIX version is broken anyway on Solaris, plus would require full //root power struct arpreq parpreq; struct sockaddr_in *psa; struct hostent *phost; char hostname[MAXHOSTNAMELEN]; char **paddrs; int sock, status=0; if (gethostname(hostname, MAXHOSTNAMELEN) != 0 ) { perror("in Get MAC Adress (internal) : gethostname"); return -1; } phost = gethostbyname(hostname); paddrs = phost->h_addr_list; sock = socket(AF_INET, SOCK_DGRAM, IPPROTO_UDP); if (sock == -1 ) { perror("in Get MAC Adress (internal) : sock"); return -1; } memset(&parpreq, 0, sizeof(struct arpreq)); psa = (struct sockaddr_in *) &parpreq.arp_pa; memset(psa, 0, sizeof(struct sockaddr_in)); psa->sin_family = AF_INET; memcpy(&psa->sin_addr, *paddrs, sizeof(struct in_addr)); status = ioctl(sock, SIOCGARP, &parpreq); if (status == -1 ) { perror("in Get MAC Adress (internal) : SIOCGARP"); return -1; } memcpy(addr, parpreq.arp_ha.sa_data, 6); return 0; #else #ifdef CMAKE_HAVE_NET_IF_H int sd; struct ifreq ifr, *ifrp; struct ifconf ifc; char buf[1024]; int n, i; unsigned char *a; #if defined(AF_LINK) && (!defined(SIOCGIFHWADDR) && !defined(SIOCGENADDR)) struct sockaddr_dl *sdlp; #endif // // BSD 4.4 defines the size of an ifreq to be // max(sizeof(ifreq), sizeof(ifreq.ifr_name)+ifreq.ifr_addr.sa_len // However, under earlier systems, sa_len isn't present, so the size is // just sizeof(struct ifreq) // We should investigate the use of SIZEOF_ADDR_IFREQ // #ifdef HAVE_SA_LEN #ifndef max #define max(a,b) ((a) > (b) ? (a) : (b)) #endif #define ifreq_size(i) max(sizeof(struct ifreq),\ sizeof((i).ifr_name)+(i).ifr_addr.sa_len) #else #define ifreq_size(i) sizeof(struct ifreq) #endif // HAVE_SA_LEN if ( (sd = socket(AF_INET, SOCK_DGRAM, IPPROTO_IP)) < 0 ) { return -1; } memset(buf, 0, sizeof(buf)); ifc.ifc_len = sizeof(buf); ifc.ifc_buf = buf; if (ioctl (sd, SIOCGIFCONF, (char *)&ifc) < 0) { close(sd); return -1; } n = ifc.ifc_len; for (i = 0; i < n; i+= ifreq_size(*ifrp) ) { ifrp = (struct ifreq *)((char *) ifc.ifc_buf+i); strncpy(ifr.ifr_name, ifrp->ifr_name, IFNAMSIZ); #ifdef SIOCGIFHWADDR if (ioctl(sd, SIOCGIFHWADDR, &ifr) < 0) continue; a = (unsigned char *) &ifr.ifr_hwaddr.sa_data; #else #ifdef SIOCGENADDR // In theory this call should also work on Sun Solaris, but apparently // SIOCGENADDR is not implemented properly thus the call // ioctl(sd, SIOCGENADDR, &ifr) always returns errno=2 // (No such file or directory) // Furthermore the DLAPI seems to require full root access if (ioctl(sd, SIOCGENADDR, &ifr) < 0) continue; a = (unsigned char *) ifr.ifr_enaddr; #else #ifdef AF_LINK sdlp = (struct sockaddr_dl *) &ifrp->ifr_addr; if ((sdlp->sdl_family != AF_LINK) || (sdlp->sdl_alen != 6)) continue; a = (unsigned char *) &sdlp->sdl_data[sdlp->sdl_nlen]; #else perror("in Get MAC Adress (internal) : No way to access hardware"); close(sd); return -1; #endif // AF_LINK #endif // SIOCGENADDR #endif // SIOCGIFHWADDR if (!a[0] && !a[1] && !a[2] && !a[3] && !a[4] && !a[5]) continue; if (addr) { memcpy(addr, a, 6); close(sd); return 0; } } close(sd); #endif // Not implemented platforms (or no Ethernet cable !) //perror("Probabely your computer is not connected on a network, therefore its MAC adress cannot be found (or there is a configuration problem on your platform)"); // But the following -> error: invalid use of 'this' in non-member function //gdcmWarningMacro( "Probabely your computer is not connected on a network, therefore its MAC adress cannot be found (or there is a configuration problem on your platform)"); memset(addr,0,6); return -1; #endif //__sun }

void GDCM_NAME_SPACE::info_callback (  const char *  msg, void *  )

sample debug callback expecting no client object Definition at line 77 of file gdcmJpeg2000.cxx. Referenced by gdcm_read_JPEG2000_file(). { std::cerr << "Info in gdcmopenjpeg" << msg << std::endl; }

int GDCM_NAME_SPACE::int_ceildivpow2 (  int  a, int  b )  [inline]

Definition at line 95 of file gdcmJpeg2000.cxx. Referenced by gdcm_read_JPEG2000_file(). { return (a + (1 << b) - 1) >> b; }

std::ostream& GDCM_NAME_SPACE::operator<< (  std::ostream &  _os, const VRKey &  _val )  [inline]

Definition at line 115 of file gdcmVRKey.h. References GDCM_NAME_SPACE::VRKey::key. { _os << _val.key[0] << _val.key[1]; return _os; }

std::ostream& GDCM_NAME_SPACE::operator<< (  std::ostream &  _os, const TagKey &  _val )  [inline]

Definition at line 103 of file gdcmTagKey.h. References GDCM_NAME_SPACE::TagKey::tag. { _os.setf( std::ios::right); _os << std::hex << std::setw( 4 ) << std::setfill( '0' ) << _val.tag[0] << '|' << std::setw( 4 ) << std::setfill( '0' ) << _val.tag[1] << std::setfill( ' ' ) << std::dec; return _os; }

std::ostream & GDCM_NAME_SPACE::operator<< (  std::ostream &  os, const Exception &  e )

Exception::operator <<. Parameters: os  ostream to write to e  exception to raise Definition at line 129 of file gdcmException.cxx. References GDCM_NAME_SPACE::Exception::fatal(), GDCM_NAME_SPACE::Exception::getError(), and GDCM_NAME_SPACE::Exception::getName(). { try { os << "Exception " << e.getName() << " thrown: " << e.getError() << std::endl; } catch(...) { Exception::fatal("operator<<(std::ostream &, const Exception&)"); } return os; }

std::istream& GDCM_NAME_SPACE::operator>> (  std::istream &  _is, VRKey &  _val )  [inline]

Definition at line 121 of file gdcmVRKey.h. References GDCM_NAME_SPACE::VRKey::key. { _is >> _val.key[0] >> _val.key[1]; return _is; }

opj_image_t* GDCM_NAME_SPACE::rawtoimage (  char *  inputbuffer, opj_cparameters_t *  parameters, int  fragment_size, int  image_width, int  image_height, int  sample_pixel, int  bitsallocated, int  sign, int  quality )

Definition at line 230 of file gdcmJpeg2000.cxx. Referenced by gdcm_write_JPEG2000_file(). { (void)quality; (void)fragment_size; int w, h; int numcomps; OPJ_COLOR_SPACE color_space; opj_image_cmptparm_t cmptparm[3]; /* maximum of 3 components */ opj_image_t * image = NULL; assert( sample_pixel == 1 || sample_pixel == 3 ); if( sample_pixel == 1 ) { numcomps = 1; color_space = CLRSPC_GRAY; } else // sample_pixel == 3 { numcomps = 3; color_space = CLRSPC_SRGB; } int subsampling_dx = parameters->subsampling_dx; int subsampling_dy = parameters->subsampling_dy; // FIXME w = image_width; h = image_height; /* initialize image components */ memset(&cmptparm[0], 0, 3 * sizeof(opj_image_cmptparm_t)); //assert( bitsallocated == 8 ); for(int i = 0; i < numcomps; i++) { cmptparm[i].prec = bitsallocated; cmptparm[i].bpp = bitsallocated; cmptparm[i].sgnd = sign; cmptparm[i].dx = subsampling_dx; cmptparm[i].dy = subsampling_dy; cmptparm[i].w = w; cmptparm[i].h = h; } /* create the image */ image = opj_image_create(numcomps, &cmptparm[0], color_space); if(!image) { return NULL; } /* set image offset and reference grid */ image->x0 = parameters->image_offset_x0; image->y0 = parameters->image_offset_y0; image->x1 = parameters->image_offset_x0 + (w - 1) * subsampling_dx + 1; image->y1 = parameters->image_offset_y0 + (h - 1) * subsampling_dy + 1; /* set image data */ //assert( fragment_size == numcomps*w*h*(bitsallocated/8) ); if (bitsallocated <= 8) { if( sign ) { rawtoimage_fill<int8_t>((int8_t*)inputbuffer,w,h,numcomps,image); } else { rawtoimage_fill<uint8_t>((uint8_t*)inputbuffer,w,h,numcomps,image); } } else if (bitsallocated <= 16) { if( sign ) { rawtoimage_fill<int16_t>((int16_t*)inputbuffer,w,h,numcomps,image); } else { rawtoimage_fill<uint16_t>((uint16_t*)inputbuffer,w,h,numcomps,image); } } else if (bitsallocated <= 32) { if( sign ) { rawtoimage_fill<int32_t>((int32_t*)inputbuffer,w,h,numcomps,image); } else { rawtoimage_fill<uint32_t>((uint32_t*)inputbuffer,w,h,numcomps,image); } } else { abort(); } return image; }

template<typename T> void GDCM_NAME_SPACE::rawtoimage_fill (  T *  inputbuffer, int  w, int  h, int  numcomps, opj_image_t *  image )

Definition at line 216 of file gdcmJpeg2000.cxx. { T *p = inputbuffer; for (int i = 0; i < w * h; i++) { for(int compno = 0; compno < numcomps; compno++) { /* compno : 0 = GREY, (0, 1, 2) = (R, G, B) */ image->comps[compno].data[i] = *p; ++p; } } }

double GDCM_NAME_SPACE::square_dist (  vector3D const &  v1, vector3D const &  v2 )  [inline]

Definition at line 154 of file gdcmOrientation.cxx. References GDCM_NAME_SPACE::vector3D::x, GDCM_NAME_SPACE::vector3D::y, and GDCM_NAME_SPACE::vector3D::z. Referenced by GDCM_NAME_SPACE::Orientation::CalculLikelyhood2Vec(). { double res; res = (v1.x - v2.x)*(v1.x - v2.x) + (v1.y - v2.y)*(v1.y - v2.y) + (v1.z - v2.z)*(v1.z - v2.z); return res; }

void GDCM_NAME_SPACE::UpdateBasicOffsetTable (  std::ostream *  fp, JpegVector const &  v, size_t  pos )

Definition at line 190 of file gdcmPixelWriteConvert.cxx. { JpegVector::const_iterator i; fp->seekp( pos ); const JpegPair &first = v[0]; for(i=v.begin(); i!=v.end(); ++i) { const JpegPair &jp = *i; if(i == v.begin() ){ assert( jp.first - first.first == 0); } uint32_t offset = (uint32_t)(jp.first - first.first); GDCM_NAME_SPACE::binary_write(*fp, offset); //std::cerr << "Updating Table:" << jp.first - first.first << std::endl; } }

void GDCM_NAME_SPACE::UpdateJpegFragmentSize (  std::ostream *  fp, JpegVector const &  v )

Definition at line 205 of file gdcmPixelWriteConvert.cxx. References binary_write(). Referenced by CloseJpeg(). { JpegVector::const_iterator i; for(i= v.begin(); i!=v.end(); ++i) { const JpegPair &jp = *i; fp->seekp( jp.first ); uint32_t length = jp.second; GDCM_NAME_SPACE::binary_write(*fp, length); //std::cerr << "Updating:" << jp.first << "," << jp.second << std::endl; } }

void GDCM_NAME_SPACE::warning_callback (  const char *  msg, void *  )

sample warning callback expecting a FILE* client object Definition at line 71 of file gdcmJpeg2000.cxx. Referenced by gdcm_read_JPEG2000_file(). { std::cerr << "Warning in gdcmopenjpeg" << msg << std::endl; }

void GDCM_NAME_SPACE::WriteDICOMItems (  std::ostream *  fp, JpegVector &  v )

Definition at line 137 of file gdcmPixelWriteConvert.cxx. References binary_write(). Referenced by GDCM_NAME_SPACE::PixelWriteConvert::SetCompressJPEG2000UserData(), and GDCM_NAME_SPACE::PixelWriteConvert::SetCompressJPEGUserData(). { // Item tag: uint16_t group = 0xfffe; uint16_t elem = 0xe000; GDCM_NAME_SPACE::binary_write(*fp, group); GDCM_NAME_SPACE::binary_write(*fp, elem); // Item Length uint32_t dummy = 0x12345678; size_t offset = fp->tellp(); JpegPair jp; jp.first = offset; v.push_back(jp); GDCM_NAME_SPACE::binary_write(*fp, dummy); }

---

Variable Documentation

DICT_ENTRY GDCM_NAME_SPACE::datadir[] [static]

Definition at line 41 of file gdcmDefaultDicts.cxx. Referenced by FillDefaultDataDict().

ELEMENT GDCM_NAME_SPACE::dataElement[] [static]

Definition at line 2928 of file gdcmDefaultDicts.cxx. Referenced by FillDefaultDIRDict().

const std::string GDCM_NAME_SPACE::GDCM_BINLOADED = "GDCM::Binary data loaded"

Definition at line 40 of file gdcmGlobal.cxx. Referenced by GDCM_NAME_SPACE::DataEntry::Print().

GDCM_EXPORT const std::string GDCM_NAME_SPACE::GDCM_BINLOADED

Definition at line 40 of file gdcmGlobal.cxx. Referenced by GDCM_NAME_SPACE::DataEntry::Print().

const char GDCM_NAME_SPACE::GDCM_FILESEPARATOR = '/'

Definition at line 51 of file gdcmGlobal.cxx. Referenced by GDCM_NAME_SPACE::Util::GetName(), GDCM_NAME_SPACE::Util::GetPath(), GDCM_NAME_SPACE::Util::NormalizePath(), and GDCM_NAME_SPACE::DicomDir::SetElement().

GDCM_EXPORT const char GDCM_NAME_SPACE::GDCM_FILESEPARATOR

Definition at line 51 of file gdcmGlobal.cxx. Referenced by GDCM_NAME_SPACE::Util::GetName(), GDCM_NAME_SPACE::Util::GetPath(), GDCM_NAME_SPACE::Util::NormalizePath(), and GDCM_NAME_SPACE::DicomDir::SetElement().

const std::string GDCM_NAME_SPACE::GDCM_NOTASCII = "GDCM::NotAscii"

Definition at line 43 of file gdcmGlobal.cxx.

GDCM_EXPORT const std::string GDCM_NAME_SPACE::GDCM_NOTASCII

Definition at line 43 of file gdcmGlobal.cxx.

const std::string GDCM_NAME_SPACE::GDCM_NOTLOADED = "GDCM::NotLoaded"

Definition at line 41 of file gdcmGlobal.cxx. Referenced by GDCM_NAME_SPACE::DocEntrySet::GetEntryString(), and GDCM_NAME_SPACE::Document::GetTransferSyntaxName().

GDCM_EXPORT const std::string GDCM_NAME_SPACE::GDCM_NOTLOADED

Definition at line 41 of file gdcmGlobal.cxx. Referenced by GDCM_NAME_SPACE::DocEntrySet::GetEntryString(), and GDCM_NAME_SPACE::Document::GetTransferSyntaxName().

const std::string GDCM_NAME_SPACE::GDCM_PIXELDATA = "GDCM::Pixel Data to be loaded"

Definition at line 44 of file gdcmGlobal.cxx.

GDCM_EXPORT const std::string GDCM_NAME_SPACE::GDCM_PIXELDATA

Definition at line 44 of file gdcmGlobal.cxx.

const std::string GDCM_NAME_SPACE::GDCM_UNFOUND = "GDCM::Unfound"

Definition at line 39 of file gdcmGlobal.cxx. Referenced by GDCM_NAME_SPACE::File::AnonymizeFile(), GDCM_NAME_SPACE::PixelReadConvert::BuildLUTRGBA(), GDCM_NAME_SPACE::SerieHelper::CreateUniqueSeriesIdentifier(), GDCM_NAME_SPACE::SerieHelper::CreateUserDefinedFileIdentifier(), GDCM_NAME_SPACE::File::DoTheLoadingJob(), GDCM_NAME_SPACE::DocEntrySet::GetEntryString(), GDCM_NAME_SPACE::File::GetImageNumber(), GDCM_NAME_SPACE::File::GetImageOrientationPatient(), GDCM_NAME_SPACE::File::GetImagePositionPatient(), GDCM_NAME_SPACE::File::GetLUTNbits(), GDCM_NAME_SPACE::File::GetModality(), GDCM_NAME_SPACE::DictGroupName::GetName(), GDCM_NAME_SPACE::File::GetNumberOfScalarComponents(), GDCM_NAME_SPACE::Orientation::GetOrientation(), GDCM_NAME_SPACE::File::GetPixelType(), GDCM_NAME_SPACE::File::GetRescaleSlope(), GDCM_NAME_SPACE::File::GetRescaleSlopeIntercept(), GDCM_NAME_SPACE::File::GetSpacing(), GDCM_NAME_SPACE::Document::GetTransferSyntaxName(), GDCM_NAME_SPACE::TS::GetValue(), GDCM_NAME_SPACE::File::IsMonochrome(), GDCM_NAME_SPACE::File::IsMonochrome1(), GDCM_NAME_SPACE::File::IsPaletteColor(), GDCM_NAME_SPACE::File::IsReadable(), GDCM_NAME_SPACE::File::IsYBRFull(), GDCM_NAME_SPACE::DicomDir::SetElement(), and GDCM_NAME_SPACE::SerieHelper::SplitOnPosition().

GDCM_EXPORT const std::string GDCM_NAME_SPACE::GDCM_UNFOUND

Definition at line 39 of file gdcmGlobal.cxx. Referenced by GDCM_NAME_SPACE::File::AnonymizeFile(), GDCM_NAME_SPACE::PixelReadConvert::BuildLUTRGBA(), GDCM_NAME_SPACE::SerieHelper::CreateUniqueSeriesIdentifier(), GDCM_NAME_SPACE::SerieHelper::CreateUserDefinedFileIdentifier(), GDCM_NAME_SPACE::File::DoTheLoadingJob(), GDCM_NAME_SPACE::DocEntrySet::GetEntryString(), GDCM_NAME_SPACE::File::GetImageNumber(), GDCM_NAME_SPACE::File::GetImageOrientationPatient(), GDCM_NAME_SPACE::File::GetImagePositionPatient(), GDCM_NAME_SPACE::File::GetLUTNbits(), GDCM_NAME_SPACE::File::GetModality(), GDCM_NAME_SPACE::DictGroupName::GetName(), GDCM_NAME_SPACE::File::GetNumberOfScalarComponents(), GDCM_NAME_SPACE::Orientation::GetOrientation(), GDCM_NAME_SPACE::File::GetPixelType(), GDCM_NAME_SPACE::File::GetRescaleSlope(), GDCM_NAME_SPACE::File::GetRescaleSlopeIntercept(), GDCM_NAME_SPACE::File::GetSpacing(), GDCM_NAME_SPACE::Document::GetTransferSyntaxName(), GDCM_NAME_SPACE::TS::GetValue(), GDCM_NAME_SPACE::File::IsMonochrome(), GDCM_NAME_SPACE::File::IsMonochrome1(), GDCM_NAME_SPACE::File::IsPaletteColor(), GDCM_NAME_SPACE::File::IsReadable(), GDCM_NAME_SPACE::File::IsYBRFull(), GDCM_NAME_SPACE::DicomDir::SetElement(), and GDCM_NAME_SPACE::SerieHelper::SplitOnPosition().

const std::string GDCM_NAME_SPACE::GDCM_UNKNOWN = "GDCM::Unknown"

Those global string that are returned by reference everywhere in gdcm code used to be in gdcmCommon.h but due to a 'bug' in gcc/MacOSX you cannot have static initialization in a multithreaded environment since there is a lazy construction everything got skrew up somehow Therefore the actual initialization is done in a cxx file (avoid duplicated symbol), and an extern is used in gdcmCommon.h. Definition at line 38 of file gdcmGlobal.cxx. Referenced by GDCM_NAME_SPACE::DocEntry::GetName(), GDCM_NAME_SPACE::Document::GetTransferSyntax(), GDCM_NAME_SPACE::DocEntry::GetVM(), GDCM_NAME_SPACE::Document::HandleOutOfGroup0002(), GDCM_NAME_SPACE::DictEntry::IsVMUnknown(), GDCM_NAME_SPACE::DocEntry::IsVMUnknown(), and GDCM_NAME_SPACE::Validator::SetInput().

GDCM_EXPORT const std::string GDCM_NAME_SPACE::GDCM_UNKNOWN

Those global string that are returned by reference everywhere in gdcm code used to be in gdcmCommon.h but due to a 'bug' in gcc/MacOSX you cannot have static initialization in a multithreaded environment since there is a lazy construction everything got skrew up somehow Therefore the actual initialization is done in a cxx file (avoid duplicated symbol), and an extern is used in gdcmCommon.h. Definition at line 38 of file gdcmGlobal.cxx. Referenced by GDCM_NAME_SPACE::DocEntry::GetName(), GDCM_NAME_SPACE::Document::GetTransferSyntax(), GDCM_NAME_SPACE::DocEntry::GetVM(), GDCM_NAME_SPACE::Document::HandleOutOfGroup0002(), GDCM_NAME_SPACE::DocEntry::IsVMUnknown(), GDCM_NAME_SPACE::DictEntry::IsVMUnknown(), and GDCM_NAME_SPACE::Validator::SetInput().

const std::string GDCM_NAME_SPACE::GDCM_UNREAD = "GDCM::UnRead"

Definition at line 42 of file gdcmGlobal.cxx. Referenced by GDCM_NAME_SPACE::DocEntrySet::GetEntryString().

GDCM_EXPORT const std::string GDCM_NAME_SPACE::GDCM_UNREAD

Definition at line 42 of file gdcmGlobal.cxx. Referenced by GDCM_NAME_SPACE::DocEntrySet::GetEntryString().

const char GDCM_NAME_SPACE::GDCM_VRUNKNOWN[2] = {' ',' '}

Definition at line 46 of file gdcmGlobal.cxx. Referenced by GDCM_NAME_SPACE::FileHelper::CopyDataEntry(), GDCM_NAME_SPACE::Document::FindDocEntryVR(), GDCM_NAME_SPACE::DocEntrySet::InsertEntryString(), GDCM_NAME_SPACE::DicomEntry::IsVRUnknown(), GDCM_NAME_SPACE::DictEntry::IsVRUnknown(), GDCM_NAME_SPACE::DocEntry::IsVRUnknown(), GDCM_NAME_SPACE::DocEntry::Print(), and GDCM_NAME_SPACE::Document::ReadNextDocEntry().

GDCM_EXPORT const char GDCM_NAME_SPACE::GDCM_VRUNKNOWN[2]

Definition at line 46 of file gdcmGlobal.cxx. Referenced by GDCM_NAME_SPACE::FileHelper::CopyDataEntry(), GDCM_NAME_SPACE::Document::FindDocEntryVR(), GDCM_NAME_SPACE::DocEntrySet::InsertEntryString(), GDCM_NAME_SPACE::DocEntry::IsVRUnknown(), GDCM_NAME_SPACE::DictEntry::IsVRUnknown(), GDCM_NAME_SPACE::DicomEntry::IsVRUnknown(), GDCM_NAME_SPACE::DocEntry::Print(), and GDCM_NAME_SPACE::Document::ReadNextDocEntry().

Global GDCM_NAME_SPACE::Glob

Global container. Definition at line 67 of file gdcmGlobal.cxx.

const char* GDCM_NAME_SPACE::OrientationTypeStrings[] [static]

Initial value: { "Not Applicable", "Axial", "Coronal", "Sagital", "Heart Axial", "Heart Coronal", "Heart Sagital", "Axial invert", "Coronal invert", "Sagital invert", "Heart Axial invert", "Heart Coronal invert", "Heart Sagital invert", NULL } THERALYS' Algorithm to determine the most similar basic orientation (Axial, Coronal, Sagital) of the image. Note: Should be run on the first gdcm::File of a 'coherent' Serie Returns: orientation code # 0 : Not Applicable (neither 0020,0037 Image Orientation Patient # nor 0020,0032 Image Position found) # 1 : Axial # -1 : Axial invert # 2 : Coronal # -2 : Coronal invert # 3 : Sagital # -3 : Sagital invert # 4 : Heart Axial # -4 : Heart Axial invert # 5 : Heart Coronal # -5 : Heart Coronal invert # 6 : Heart Sagital # -6 : Heart Sagital invert Definition at line 55 of file gdcmOrientation.cxx. Referenced by GDCM_NAME_SPACE::Orientation::GetOrientationTypeString().

const char* GDCM_NAME_SPACE::SpecialStrings[] [static]

Transfer Syntaxes gdcm deals with (internal use only). Definition at line 43 of file gdcmTS.cxx. Referenced by GDCM_NAME_SPACE::TS::GetSpecialTransferSyntax(), GDCM_NAME_SPACE::TS::IsJPEG2000(), GDCM_NAME_SPACE::TS::IsJPEGLossless(), GDCM_NAME_SPACE::TS::IsJPEGLossy(), GDCM_NAME_SPACE::TS::IsJPEGLS(), GDCM_NAME_SPACE::TS::IsMPEG(), GDCM_NAME_SPACE::TS::IsRLELossless(), and GDCM_NAME_SPACE::TS::IsUltrasoundImageStorage_Retired().

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