CREATIS Laboratory || INSA France-Lyon

Publications



THESIS


  1. Olivier Bernard. Segmentation in echocardiographic imaging using parametric level set model driven by the statistics of the radiofrequency signal. Ph.D. in computer science, Institut National des Sciences Appliquees, December 2006 [PDF] [Slides].


INTERNATIONAL JOURNALS


  1. Sandro Queiros, Daniel Barbosa, Brecht Heyde, Pedro Morais, Joao L. Vilaça, Denis Friboulet, Olivier Bernard, Jan D'hooge. Fast Automatic Myocardial Segmentation in 4D cine CMR datasets. In Medical Image Analysis, 2014, accepted.
  2. Thomas Dietenbeck, Daniel Barbosa, Martino Alessandrini, R. Jasaityte, V. Robesyn, Jan D’hooge , Denis Friboulet, Olivier Bernard. Whole myocardium tracking in 2D-echocardiography in multiple orientations using a motion constrained level-set. In Medical Image Analysis, 2014, accepted.
  3. Martino Alessandrini, Adrian Basarab, Loic Boussel, Xinxin Guo, André Serusclat, Denis Friboulet, Denis Kouamé, Olivier Bernard, Hervé Liebgott. A New Technique for the Estimation of Cardiac Motion in Echocardiography Based on Transverse Oscillations: a preliminary evaluation in silico and a feasibility demonstration in vivo. In IEEE Transactions on Medical Imaging, 2014, accepted.
  4. Daniel Barbosa, Brecht Heyde, Maja Cikes, Thomas Dietenbeck, Piet Claus, Denis Friboulet, Olivier Bernard, Jan D'hooge. Real-Time 3D Interactive Segmentation of Echocardiographic Data Through User-based Deformation of B-Spline Explicit Active Surfaces. In Computerized Medical Imaging and Graphics, volume 38, pp. 57-67, 2014.
  5. Martino Alessandrini, Olivier Bernard, Adrian Basarab, Hervé Liebgott. Multiscale optical flow computation from the monogenic signal. In IRBM, volume 34, pp. 33-37, 2013.
  6. Julien Richy, denis Friboulet, Adeline Bernard, Olivier Bernard, Hervé Liebgott. Blood Velocity Estimation Using Compressive Sensing. In IEEE Transactions on Medical Imaging, 2013, in press.
  7. M. De Craene et al. 3D Strain assessment in ultrasound (Straus): a synthetic comparison of five tracking methodologies. In IEEE Transactions on Medical Imaging, volume 32, no. 9, pp. 1632-1646, 2013.
  8. Daniel Barbosa, Thomas Dietenbeck, Brecht Heyde, Helene Houle, Denis Friboulet, Jan D'hooge, Olivier Bernard. Fast and Fully Automatic 3D Echocardiographic Segmentation Using B-Spline Explicit Active Surfaces: Feasibility Study and Validation in a Clinical Setting. In Ultrasound in Medicine and Biology, volume 39, no. 1, pp. 89-101, 2013.
  9. Martino Alessandrini, Adrian Basarab, Hervé Liebgott, Olivier Bernard. Myocardial Motion Estimation from Medical Images Using the Monogenic Signal. In IEEE Transactions on Image Processing, volume 22, no. 3, pp. 1084-1095, 2013. [Preprint-pdf] (c)
  10. Daniel Barbosa, Thomas Dietenbeck, Helene Houle, Denis Friboulet, Olivier Bernard, Jan D'hooge. Quantification of Left Ventricular Volume and Global Function using a Fast Automated Segmentation Tool: Validation in a Clinical Setting. In The International Journal of Cardiovascular Imaging, volume 29, no. 2, pp. 309-316, 2013.
  11. T. Glatard, C. Lartizien, B. Gibaud, R. Ferreira da Silva, G. Forestier, F. Cervenansky, M. Alessandrini, H. Benoit-Cattin, O. Bernard, S. Camarasu-Pop, et al. A Virtual Imaging Platform for multi-modality medical image simulation. In IEEE Transactions on Medical Imaging, volume32, no. 1, pp. 110-118, 2013.
  12. Jef Vandemeulebroucke, Olivier Bernard, Jan Kybic, Patrick Clarysse, David Sarrut. Automated Segmentation of a Motion Mask to Preserve Sliding Motion in Deformable Registration of Thoracic CT. In Medical Physics, volume 39, no. 2, pp. 1006-1015, 2012.
  13. Thomas Dietenbeck, Martino Alessandrini, Daniel Barbosa, Jan D'hooge, Denis Friboulet, Olivier Bernard. Detection of the whole myocardium in 2D-echocardiography for multiple orientations using a geometrically constrained level-set . In Medical Image Analysis, volume 16, no. 2, pp. 386-401, 2012.
  14. Daniel Barbosa, Thomas Dietenbeck, Joel Schaerer, Jan D'hooge, Denis Friboulet, Olivier Bernard. B-Spline Explicit Active Surfaces: An efficient framework for real-time 3D region-based segmentation. In IEEE Transactions on Image Processing, volume 21, no. 1, pp. 241-251, 2012. [Preprint-pdf] (c)
  15. Martino Alessandrini, Simona Maggio, Jonathan Porée, Luca De Marchi, Nicolò Speciale, Olivier Bernard, Olivier Basset. A Restoration Framework for Ultrasonic Tissue Characterization. In IEEE Transactions on Ultrasonics, Ferroelectrics and Frequency Control, volume 58, no. 11, pp. 2344-2360, 2011.
  16. Martino Alessandrini, Thomas Dietenbeck, Olivier Basset, Denis Friboulet, Olivier Bernard. Using a geometric formulation of annular-like shape priors for constraining variational level-sets. In Pattern Recognition Letters, volume 32, pp. 1240-1249, 2011.
  17. Basma Touil, Adrian Basarab, Philippe Delachartre, Olivier Bernard, Denis Friboulet. Analysis of motion tracking in echocardiographic image sequences: influence of system geometry and point-spread function. In Ultrasonics, volume 50, no. 3, pp. 373-386, 2010.
  18. Olivier Bernard, Denis Friboulet, Philippe Thevenaz, Michael Unser. Variational B-Spline Level-Set: A Linear Filtering Approach for Fast Deformable Model Evolution. In IEEE Transactions on Image Processing, volume 18, no. 6, pp. 1179-1191, 2009. [Preprint-pdf] (c)
  19. Olivier Bernard, Basma Touil, Jan D'hooge, Denis Friboulet. Statistical modeling of the radiofrequency signal for partially and fully developed speckle based on a Generalized Gaussian model with application to echocardiography. In IEEE Transactions on Ultrasonics, Ferroelectrics and Frequency Control, volume 54, no. 10, pp. 2189-2194, 2007.
  20. Arnaud Gelas, Olivier Bernard, Denis Friboulet, Rémy Prost. Compactly supported radial basis functions based collocation method for level-set evolution in image segmentation. In IEEE Transactions on Image Processing, volume 16, no. 07, pp. 1873-1887, 2007.
  21. Olivier Bernard, Basma Touil, Jan D'hooge, Denis Friboulet. Statistics of the radiofrequency signal based on k distribution with application to echocardiographic images. In IEEE Transactions on Ultrasonics, Ferroelectrics and Frequency Control, volume 53, no. 09, pp. 1689-1694, 2006.
  22. Igor Dydenko, Fady Jamal, Olivier Bernard, Isabelle Magnin, Denis Friboulet. A level set framework with a shape and motion prior for segmentation and region tracking in echocardiography. In Medical Image Analysis, volume 10, no. 2, pp. 162-177, 2006.


INTERNATIONAL CONFERENCE WITH PROCEEDINGS: INVITED PAPER


  1. Olivier Bernard. 3D Echocardiography: Recent Advances and Future Directions. In Thematic Conference on Computational Vision and Medical Image Processing (VIPIMAGE'13), Madeira Island, Portugal, 2013. [Slides]
  2. Adrian Basarab, Hervé Liebgott, Olivier Bernard, Denis Friboulet, and Denis Kouamé. Medical ultrasound image reconstruction using distributed compressive sampling. In IEEE International Symposium on Biomedical Imaging (ISBI’ 13), San Francisco, USA, 2013.
  3. Hervé Liebgott, Adrian Basarab, Denis Kouame, Olivier Bernard, Denis Friboulet. Compressive sensing in medical ultrasound. In IEEE International Ultrasonics Symposium, Dresden, Germany, 2012.
  4. Denis Friboulet, Olivier Bernard. Segmentation of medical ultrasound images. In IEEE International Ultrasonics Symposium, Florida, USA, 2011. [Slides]


INTERNATIONAL CONFERENCE WITH PROCEEDINGS


  1. Olivier Bernard, Miaomiao Zhang, François Varray, Jean-Philippe Thiran, Hervé Liebgott, Denis Friboulet. Ultrasound Fourier Slice Imaging: a novel approach for ultrafast imaging technique. In IEEE International Ultrasonics Symposium, Chicago, USA, 2014.
  2. Miaomiao Zhang, Hervé Liebgott, François Varray, Denis Friboulet, Olivier Bernard. Speckle Decorrelation of Motion in Ultrasound Fourier Images. In IEEE International Ultrasonics Symposium, Chicago, USA, 2014.
  3. M. Alessandrini, B. Heyde, S. Cygan, M. Sermesant, H. Delingette, O. Bernard, M. De Craene, J. D'hooge. Elastic registration vs. block matching for quantification of cardiac function with 3D ultrasound: initial results of a direct comparison in silico based on a new evaluation pipeline. In IEEE International Ultrasonics Symposium, Chicago, USA, 2014.
  4. Thomas Dietenbeck, Daniel Barbosa, Martino Alessandrini, Jan D'hooge, Denis Friboulet, Olivier Bernard. A level-set approach for tracking objects in image sequences using a level conservation constraint: application to cardiac sequences. In IEEE International Conference On Image Processing (ICIP’ 14), Paris, France, 2014.
  5. Oana Lorintiu, Hervé Liebgott, Martino Alessandrini, Olivier Bernard, Denis Friboulet. Compressive Sensing reconstruction of 3D ultrasound data using dictionary learning. In IEEE International Conference On Image Processing (ICIP’ 14), Paris, France, 2014.
  6. M. De Craene, M. Alessandrini, P. Allain, S. Marchesseau, I. Waechter-Stehle, J. Weese, E. Saloux, H.G. Morales, R. Cuingnet, H. Delingette, M. Sermesant, O. Bernard and J. D'hooge. Generation of ultra-realistic synthetic echocardiographic sequences. In IEEE International Symposium on Biomedical Imaging (ISBI’ 14), Beijing, China, 2014.
  7. Daniel Barbosa, Olivier Bernard, Brecht Heyde, Thomas Dietenbeck, Denis Friboulet and Jan D'hooge. Hybrid Energy Approach for Real-time B-spline Explicit Active Tracking of Surfaces (heartBEATS). In IEEE International Ultrasonics Symposium, Prague, Czech Republic, 2013.
  8. Daniel Barbosa, Olivier Bernard, Brecht Heyde, Thomas Dietenbeck, Denis Friboulet and Jan D'hooge. Towards Online Real-Time Strain Estimation: Feasibility Study and Initial Clinical Validation. In IEEE International Ultrasonics Symposium, Prague, Czech Republic, 2013.
  9. Martino Alessandrini, Adrian Basarab, Hervé Liebgott and Olivier Bernard. Cardiac motion assessement from echocardiographic image sequences by means of the structure multivector. In IEEE International Ultrasonics Symposium, Prague, Czech Republic, 2013.
  10. Oana Lorintiu, Hervé Liebgott, Olivier Bernard and Denis Friboulet. Compressive Sensing Ultrasound Imaging using Overcomplete Dictionaries. In IEEE International Ultrasonics Symposium, Prague, Czech Republic, 2013.
  11. Daniel Barbosa, Brecht Heyde, Thomas Dietenbeck, Denis Friboulet Jan D'hooge and Olivier Bernard. Fast left ventricle tracking in 3D echocardiographic data using anatomical affine optical flow. In Functional Imaging and Modeling of the Heart (FIMH’ 13), London, England, 2013
  12. Sandro Queirós, Daniel Barbosa, Breycht Heyde, Pedro Morais, Denis Friboulet, Piet Claus, Olivier Bernard and Jan D'hooge. Fast fully automatic segmentation of the myocardium in 2D cine MR images. In Functional Imaging and Modeling of the Heart (FIMH’ 13), London, England, 2013
  13. Thomas Dietenbeck, Martino Alessandrini, Daniel Barbosa, Jan D'hooge, Denis Friboulet, Olivier Bernard. Multiview myocardial tracking in echocardiographic 2D sequences using shape and motion constraiend level-set. In IEEE International Symposium on Biomedical Imaging (ISBI’ 13), San Francisco, USA, 2013.
  14. Adrian Basarab, Hervé Liebgott, Olivier Bernard, Denis Friboulet, Denis Kouamé. Medical ultrasound image reconstruction using distributed compressive sampling. In IEEE International Symposium on Biomedical Imaging (ISBI’ 13), San Francisco, USA, 2013.
  15. Martino Alessandrini, Hervé Liebgott, Daniel Barbosa and Olivier Bernard. Monogenic phase based optical flow computation for myocardial motion analysis in 3D echocardiography. In International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI-STENT'12), Nice, France, 2012.
  16. Leonardo Flórez-Valencia, Eduardo E. Dávila Serrano, Juan G. Riveros Reyes, Olivier Bernard, Jonas Latt, Orestis Malaspinas, Bastien Chopard, Guy Courbebaisse and Maciej Orkisz. Virtual deployment of pipeline flow diverters in cerebral vessels with aneurysms to understand thrombosis. In International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI-STENT'12), Nice, France, 2012.
  17. Martino Alessandrini, Hervé Liebgott, Adrian Basarab, Olivier Bernard. Monogenic phase based myocardial motion analysis from cardiac ultrasound with transverse oscillations. In IEEE International Ultrasonics Symposium, Dresden, Germany, 2012.
  18. Daniel Barbosa, Brecht Heyde, Olivier Bernard, Thomas Dietenbeck, Helene Houle, Denis Friboulet and Jan D'hooge. B-spline Explicit Active Tracking of Surfaces (BEATS): Application to real-time 3D segmentation and tracking of the left ventricle in 3D echocardiography. In IEEE International Ultrasonics Symposium, Dresden, Germany, 2012.
  19. Francesca Galluzzo1, Daniel Barbosa, Helene Houle, Nicolò Speciale, Denis Friboulet, Jan D'hooge and Olivier Bernard A GPU Level-Set Segmentation Framework for 3D Echocardiography. In IEEE International Ultrasonics Symposium, Dresden, Germany, 2012.
  20. Dorin Bibicu, Daniel Barbosa, Brecht Heyde, Denis Friboulet, Olivier Bernard, Luminita Moraru, Piet Claus, Jan D'hooge. An integrated solution for semi-automatic segmentation of volumetric ultrasound data based on B-spline explicit active surfaces. In IEEE International Ultrasonics Symposium, Dresden, Germany, 2012.
  21. Martino Alessandrini, Hervé Liebgott, Adrian Basarab, Patrick Clarysse, Olivier Bernard. Monogenic signal for cardiac motion analysis from tagged magnetic resonance image sequences. In Computers in Cardiology (CinC’ 12), Krakow, Poland, 2012.
  22. Francesca Galluzzo, Nicolò Speciale, Guy Courbebaisse, Olivier Bernard. A rigorous and efficient GPU implementation of level-set sparse field algorithm. In IEEE International Conference On Image Processing (ICIP’ 12), Orlando, USA, 2012.
  23. Martino Alessandrini, Hervé Liebgott, Denis Friboulet, Olivier Bernard. Highly realistic simulation of echocardiographic image sequences for ground-truth validation of motion estimation. In IEEE International Conference On Image Processing (ICIP’ 12), Orlando, USA, 2012.
  24. Daniel Barbosa, Thomas Dietenbeck, Denis Friboulet, Jan D'hooge, Olivier Bernard. Fast and fully automatic 3D echocardiographic segmentation using B-Spline Explicit Active Surfaces. In IEEE International Symposium on Biomedical Imaging (ISBI’ 12), Barcelona, Spain, 2012.
  25. Daniel Barbosa, Olivier Bernard, Thomas Dietenbeck, Denis Friboulet, H. Houle, Jan D'hooge. Fast 3D echocardiographic segmentation using B-Spline Explicit Active Surfaces: A validation study in a clinical setting. In IEEE International Ultrasonics Symposium, Florida, USA, 2011.
  26. F. Douziech, Hervé Liebgott, Olivier Bernard, Adrian Basarab. Affine phase based motion estimation applied to echocardiography. In IEEE International Ultrasonics Symposium, Florida, USA, 2011.
  27. Daniel Barbosa, Thomas Dietenbeck, Denis Friboulet, Jan D'hooge, Olivier Bernard. Towards Real-Time 3D Region-Based Segmentation: B-Spline Explicit Active Surfaces. In IEEE International Conference On Image Processing (ICIP’ 11), Brussels, Belgium, 2011.
    Best paper award finalist
  28. Thomas Dietenbeck, Martino Alessandrini, Daniel Barbosa, Jan D'hooge, Denis Friboulet, Olivier Bernard. Multiview myocardial segmentation in echocardiographic images using a piecewise parametric shape prior. In IEEE International Symposium on Biomedical Imaging (ISBI’ 11), Chicago, Illinois, USA, 2011.
  29. Daniel Barbosa, Thomas Dietenbeck, Denis Friboulet, Jan D'hooge, Olivier Bernard. Real-time region-based segmentation of 3D inhomogeneous objects in medical images. In IEEE International Symposium on Biomedical Imaging (ISBI’ 11), Chicago, Illinois, USA, 2011.
  30. Simona Maggio, Martino Alessandrini, Nicolò Speciale, Olivier Bernard, Didier Vray, Olivier Basset, Michael Unser. Continuous domain ARMA modeling for ultrasound tissue characterization. In IEEE International Symposium on Biomedical Imaging (ISBI’ 11), Chicago, Illinois, USA, 2011.
  31. Martino Alessandrini, Simona Maggio, Jonathan Porée, De Marchi, Speciale, Emilie Franceschini, Olivier Bernard, Olivier Basset. An expectation maximization framework for an improved tissue characterization using ultrasounds. In SPIE Medical Imaging, Orlando, USA, 2011.
  32. Daniel Barbosa, Olivier Bernard, Oana Savu, Thomas Dietenbeck, Brecht Heyde1, Piet Claus, Denis Friboulet, Jan D'Hooge. Coupled B-spline Active Geometric Functions for Myocardial Segmentation: A localized region-based approach. In IEEE International Ultrasonics Symposium, San Diego, USA, 2010.
  33. Martino Alessandrini, Thomas Dietenbeck, Daniel Barbosa, Jan D'Hooge, Olivier Basset, Nicolo Speciale, Denis Friboulet, Olivier Bernard. Segmentation of the Full Myocardium in Echocardiography Using Constrained Level-Sets. In Computers in Cardiology (CinC’ 10), Belfast, Ireland, 2010.
  34. Thomas Dietenbeck, Martino Alessandrini, Denis Friboulet, Olivier Bernard. CREASEG: a free software for the evaluation of image segmentation algorithms based on level-set. In IEEE International Conference On Image Processing (ICIP’ 10), Hong Kong, China, 2010.
  35. Martino Alessandrini, Thomas Dietenbeck, Olivier Basset, Denis Friboulet, Olivier Bernard. Using a geometric formulation of annular-like shape priors for constraining variational level-sets. In IEEE International Conference On Image Processing (ICIP’ 10), Hong Kong, China, 2010.
  36. Jef Vandemeulebroucke, Olivier Bernard, Jan Kybic, Patrick Clarysse, David Sarrut. Automatic motion mask extraction for deformable registration of the lungs. In XVIth International Conference on the Use of Computers in Radiation Therapy (ICCR’ 10), Amsterdam, Netherlands, 2010.
  37. Martino Alessandrini, Denis Friboulet, Olivier Basset, Jan D'hooge, Olivier Bernard. Level-set segmentation of myocardium and epicardium in ultrasound images using localized Bhattacharyya distance. In IEEE International Ultrasonics Symposium, Roma, Italy, 2009.
  38. Olivier Bernard, Denis Friboulet. Fast medical image segmentation through local B-Spline level-set and multiresolution. In IEEE International Symposium on Biomedical Imaging (ISBI’ 09), Boston, Massachusetts, USA, 2009.
  39. Basma Touil, Adrian Basarab, Olivier Bernard, Denis Friboulet. Influence of system geometry on motion tracking in echocardiographic image sequences. In IEEE International Symposium on Biomedical Imaging (ISBI’ 09), Boston, Massachusetts, USA, 2009.
  40. Olivier Bernard, Denis Friboulet, Philippe Thevenaz, Michael Unser. Variational B-spline level-set method for fast biomedical segmentation. In IEEE International Symposium on Biomedical Imaging (ISBI’ 08), Paris, France, 2008.
  41. Hervé Liebgott, Adrian Basarab, Stephan Marincas, Olivier Bernard, Denis Friboulet. Tangential oscillations for motion estimation in echocardiography. In IEEE International Ultrasonics Symposium, Beijing, China, 2008.
  42. Sorina Camarasu-Pop, Hugues Benoit-Cattin, Laurent Guigues, Patrick Clarysse, Olivier Bernard, Denis Friboulet. Towards a Virtual Radiological Platform Based on a Grid Infrastructure. In Medical imaging on grids: achievements and perspectives. In MICCAI (Grid Workshop), New York, USA, 2008.
  43. Basma Touil, Olivier Bernard, Denis Friboulet. Motion decorrelation in echocardiography: analysis from a realistic simulation. In IEEE International Symposium on Biomedical Imaging (ISBI’ 08), Paris, France, 2008.
  44. Laurent Saroul, Olivier Bernard, Didier Vray, Denis Friboulet. Prostate segmentation in echographic images: a variational approach using deformable super-ellipse and Rayleigh distribution. In IEEE International Symposium on Biomedical Imaging (ISBI’ 08), Paris, France, 2008.
  45. Hervé Liebgott, Olivier Bernard, Christian Cachard, Denis Friboulet. Field simulation parameters design for realistic statistical parameters of Radio-Frequency ultrasound images. In IEEE International Ultrasonic Symposium, New York, NY, USA, 2007.
  46. Olivier Bernard, Basma Touil, Arnaud Gelas, Rémy Prost, Denis Friboulet. A RBF-based multiphase level set method for segmentation in echocardiography using the statistics of the radiofrequency signal. In IEEE International Conference On Image Processing (ICIP’ 07), San Antonio, Texas, USA, volume 3, pp. 157-160, 2007.
  47. Arnaud Gelas, Joel Schaerer, Olivier Bernard, Denis Friboulet, Rémy Prost. Radial basis functions collocation methods for model based level-set segmentation. In IEEE International Conference On Image Processing (ICIP’ 07), San Antonio, Texas, USA, volume 2, pp. 237-240, 2007.
  48. Olivier Bernard, Basma Touil, Arnaud Gelas, Rémy Prost, Denis Friboulet. Segmentation of myocardial regions in echocardiography using the statistics of the radio-frequency signal. In Functional Imaging and Modeling of the Heart (FIMH’ 07), Salt Lake City, UT, USA, pages 433-442, 2007.
  49. Olivier Bernard, Jan D'hooge, Denis Friboulet. Statistical Modeling of the Radio-frequency Signal in Echocardiographic Images Using Modified K-Distribution and Generalized Gaussian Distribution. In IEEE International Ultrasonic Symposium, Vancouver, Canada, pp. 1710-1713, 2006.
  50. Olivier Bernard, Jan D'hooge, Denis Friboulet. Segmentation of echocardiographic images based on statistical modelling of the radio-frequency signal. In European Signal Processing Conference (EUSIPCO’ 06), Florence, Italy, pages Article ID cr2205, 4 pages, 2006.
  51. Olivier Bernard, Jan D'hooge, Denis Friboulet. Statistical modelling of the radio-frequency signal in echocardiographic images based on generalized Gaussian distribution. In IEEE International Symposium on Biomedical Imaging (ISBI’ 06), Arlington, Virginia, USA, pp. 153-156, 2006.
  52. Olivier Bernard, Jan D'hooge, Denis Friboulet. Segmentation d’images échocardiographiques par contours actifs implicites : exploitation de descripteurs statistiques de régions. In GRETSI, Louvain-la-Neuve, Belgium, pp. 359-362, 2005.

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